clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMSF028F13 | Sequence | 657 | 010802 (5) | ref|XP_009613748.1| | 1e-31 | PREDICTED: non-specific lipid-transfer protein 2-like [Nicotiana tomentosiformi | 618 | 010802 (5) | ref|XP_009613748.1| | 8e-32 | PREDICTED: non-specific lipid-transfer protein 2-like [Nicotiana tomentosiformi |
JMSF029F13 | Sequence | 278 | 000573 (73) | pdb|1ZEQ|X | 7e-42 | Chain X, 1.5 A Structure Of Apo-Cusf Residues 6-88 From Escherichia Coli | 601 | 010802 (5) | ref|XP_009613748.1| | 7e-32 | PREDICTED: non-specific lipid-transfer protein 2-like [Nicotiana tomentosiformi |
JMSF035E01 | Sequence | 676 | 010802 (5) | ref|XP_009613748.1| | 1e-31 | PREDICTED: non-specific lipid-transfer protein 2-like [Nicotiana tomentosiformi | 635 | 010802 (5) | ref|XP_009613748.1| | 1e-31 | PREDICTED: non-specific lipid-transfer protein 2-like [Nicotiana tomentosiformi |
This contig is upended
. : . : . : . : . : . :
rJMSF035E01+ GATCAAAGCAAACACA
rJMSF028F13+ GATCAAAGCAAACACA
rJMSF029F13+ GATCAAAGCAAACACA
JMSF028F13- GATCAAAGCAAACACA
JMSF035E01- GATCAAAGCAAACACA
____________________________________________________________
consensus GATCAAAGCAAACACA
. : . : . : . : . : . :
rJMSF035E01+ AACTCAAACAACACTCTAGCTTAGCTTGGCAATCCCCAATTAAGGCCAACCAAACAACAT
rJMSF028F13+ AACTCAAACAACACTCTAGCTTAGCTTGGCAATCCCCAATTAAGGCCAACCAAACAACAT
rJMSF029F13+ AACTCAAACAACACTCTAGCTTAGCTTGGCAATCCCCAATTAAGGCCAACCAAACAACAT
JMSF028F13- AACTCAAACAACACTCTAGCTTAGCTTGGCAATCCCCAATTAAGGCCAACCAAACAACAT
JMSF035E01- AACTCAAACAACACTCTAGCTTAGCTTGGCAATCCCCAATTAAGGCCAACCAAACAACAT
____________________________________________________________
consensus AACTCAAACAACACTCTAGCTTAGCTTGGCAATCCCCAATTAAGGCCAACCAAACAACAT
. : . : . : . : . : . :
rJMSF035E01+ TGCAATGAGGAGCATAGCAATCTGCGCGATATTACTGGTGTTGGTTCTCGGGGCATCAAA
rJMSF028F13+ TGCAATGAGGAGCATAGCAATCTGCGCGATATTACTGGTGTTGGTTCTCGGGGCATCAAA
rJMSF029F13+ TGCAATGAGGAGCATAGCAATCTGCGCGATATTACTGGTGTTGGTTCTCGGGGCATCAAA
JMSF028F13- TGCAATGAGGAGCATAGCAATCTGCGCGATATTACTGGTGTTGGTTCTCGGGGCATCAAA
JMSF035E01- TGCAATGAGGAGCATAGCAATCTGCGCGATATTACTGGTGTTGGTTCTCGGGGCATCAAA
____________________________________________________________
consensus TGCAATGAGGAGCATAGCAATCTGCGCGATATTACTGGTGTTGGTTCTCGGGGCATCAAA
. : . : . : . : . : . :
rJMSF035E01+ AGTTGAAGTGACTGAAGCGGTGACATGTAATCCCTTACAACTCAGTCCTTGTGCCACCGC
rJMSF028F13+ AGTTGAAGTGACTGAAGCGGTGACATGTAATCCCTTACAACTCAGTCCTTGTGCCACCGC
rJMSF029F13+ AGTTGAAGTGACTGAAGCGGTGACATGTAATCCCTTACAACTCAGTCCTTGTGCCACCGC
JMSF028F13- AGTTGAAGTGACTGAAGCGGTGACATGTAATCCCTTACAACTCAGTCCTTGTGCCACCGC
JMSF035E01- AGTTGAAGTGACTGAAGCGGTGACATGTAATCCCTTACAACTCAGTCCTTGTGCCACCGC
____________________________________________________________
consensus AGTTGAAGTGACTGAAGCGGTGACATGTAATCCCTTACAACTCAGTCCTTGTGCCACCGC
. : . : . : . : . : . :
rJMSF035E01+ GATAACATCTTCCAACACCTCTCCTAGCCCGGTGTGTTGCTCGAAGCTCAAAGAGCAAAG
rJMSF028F13+ GATAACATCTTCCAACACCTCTCCTAGCCCGGTGTGTTGCTCGAAGCTCAAAGAGCAAAG
rJMSF029F13+ GATAACATCTTCCAACACCTCTCCTAGCCCGGTGTGTTGCTCGAAGCTCAAAGAGCAAAG
JMSF028F13- GATAACATCTTCCAACACCTCTCCTAGCCCGGTGTGTTGCTCGAAGCTCAAAGAGCAAAG
JMSF035E01- GATAACATCTTCCAACACCTCTCCTAGCCCGGTGTGTTGCTCGAAGCTCAAAGAGCAAAG
____________________________________________________________
consensus GATAACATCTTCCAACACCTCTCCTAGCCCGGTGTGTTGCTCGAAGCTCAAAGAGCAAAG
. : . : . : . : . : . :
rJMSF035E01+ GCCTTGCCTATGCAAGTACATGAAGGATCCAAGGCTCCAAAGGTTCATTGCCTCTCCTAA
rJMSF028F13+ GCCTTGCCTATGCAAGTACATGAAGGATCCAAGGCTCCAAAGGTTCATTGCCTCTCCTAA
rJMSF029F13+ GCCTTGCCTATGCAAGTACATGAAGGATCCAAGGCTCCAAAGGTTCATTGCCTCTCCTAA
JMSF028F13- GCCTTGCCTATGCAAGTACATGAAGGATCCAAGGCTCCAAAGGTTCATTGCCTCTCCTAA
JMSF035E01- GCCTTGCCTATGCAAGTACATGAAGGATCCAAGGCTCCAAAGGTTCATTGCCTCTCCTAA
____________________________________________________________
consensus GCCTTGCCTATGCAAGTACATGAAGGATCCAAGGCTCCAAAGGTTCATTGCCTCTCCTAA
. : . : . : . : . : . :
rJMSF035E01+ TGCCAAGAAGGTTGCCAACACTTGTGGGTCTCCCTTTCCTCGTTGCTAAAGGCAAACATC
rJMSF028F13+ TGCCAAGAAGGTTGCCAACACTTGTGGGTCTCCCTTTCCTCGTTGCTAAAGGCAAACATC
rJMSF029F13+ TGCCAAGAAGGTNGCCAACACTTGTGGGTCTCCCTTTCCTCGTTGCTAAAGGCAAACATC
JMSF028F13- TGCCAAGAAGGTTGCCAACACTTGTGGGTCTCCCTTTCCTCGTTGCTAAAGGCAAACATC
JMSF035E01- TGCCAAGAAGGTTGCCAACACTTGTGGGTCTCCCTTTCCTCGTTGCTAAAGGCAAACATC
____________________________________________________________
consensus TGCCAAGAAGGTTGCCAACACTTGTGGGTCTCCCTTTCCTCGTTGCTAAAGGCAAACATC
. : . : . : . : . : . :
rJMSF035E01+ ACTTGACTTTGGTACTAAGTTGTCCCATCAAGTTGTATTAGTAATCCTTTCTATTACTAT
rJMSF028F13+ ACTTGACTTTGGTACTAAGTTGTCCCATCAAGTTGTATTAGTAATCCTTTCTATTACTAT
rJMSF029F13+ ACTTGACTTTGGTACTAAGTTGTCCCATCAAGTTGTATTAGTAATCCTTTCTATTACTAT
JMSF028F13- ACTTGACTTTGGTACTAAGTTGTCCCATCAAGTTGTATTAGTAATCCTTTCTATTACTAT
JMSF035E01- ACTTGACTTTGGTACTAAGTTGTCCCATCAAGTTGTATTAGTAATCCTTTCTATTACTAT
____________________________________________________________
consensus ACTTGACTTTGGTACTAAGTTGTCCCATCAAGTTGTATTAGTAATCCTTTCTATTACTAT
. : . : . : . : . : . :
rJMSF035E01+ CTTATTTTGTCTCTTAATTATATATACAACTACTCCTACATATATATACTACCTATCATC
rJMSF028F13+ CTTATTTTGTCTCTTAATTATATATACAACTACTCCTACATATATATACTACCTATCATC
rJMSF029F13+ CNTATTTTGTCTCTTAATTATATATACAACTACTCCTACATATATATACTACCTATCATC
JMSF028F13- CTTATTTTGTCTCTTAATTATATATACAACTACTCCTACATATATATACTACCTATCATC
JMSF035E01- CTTATTTTGTCTCTTAATTATATATACAACTACTCCTACATATATATACTACCTATCATC
____________________________________________________________
consensus CTTATTTTGTCTCTTAATTATATATACAACTACTCCTACATATATATACTACCTATCATC
. : . : . : . : . : . :
rJMSF035E01+ CAAGTTAAAAGTGGTGTATTTTGTTAACTAGTAAAAGAGAGTTGGTATCATATATGGGAC
rJMSF028F13+ CAAGTTAAAAGTGGTGTATTTTGTTAACTAGTAAAAGAGAGTTGGTATCATATATGGGAC
rJMSF029F13+ CAAGTTAAAAGTGGTGTATTTTGTTAACTAGTAAAAGAGAGTTGGTATCATATATGGGAC
JMSF028F13- CAAGTTAAAAGTGGTGTATTTTGTTAACTAGTAAAAGAGAGTTGGTATCATATATGGGAC
JMSF035E01- CAAGTTAAAAGTGGTGTATTTTGTTAACTAGTAAAAGAGAGTTGGTATCATATATGGGAC
____________________________________________________________
consensus CAAGTTAAAAGTGGTGTATTTTGTTAACTAGTAAAAGAGAGTTGGTATCATATATGGGAC
. : . : . : . : . : . :
rJMSF035E01+ AATTGTTAGCTACTCTTAATATGTGTTCTATGTTGTTGTACTATGATGATATTAAATGGC
rJMSF028F13+ AATTGTTAGCTACTCTTAATATGTGTTCTATGTTGTTGTACTATGATGATAT
rJMSF029F13+ AATTGTTAGCTACTCTTAATATGTGTTCTATGTTGTTGTACTATG
JMSF028F13- AATTGTTAGCTACTCTTAATATGTGTTCTATGTTGTTGTACTATGATGATATTAAATGGC
JMSF035E01- AATTGTTAGCTACTCTTAATATGTGTTCTATGTTGTTGTACTATGATGATATTAAATGGC
____________________________________________________________
consensus AATTGTTAGCTACTCTTAATATGTGTTCTATGTTGTTGTACTATGATGATATTAAATGGC
. : . : . : . : . : . :
rJMSF035E01+ TTTTTTTGTAATGGAGACC
JMSF028F13- TTTTTTTGTAATGGAGACCTTGTATTATGGTTATACAA
JMSF035E01- TTTTTTTGTAATGGAGACCTTGTATTATGGTTATACAATGTTACGTGTTTGGTTGTATTG
____________________________________________________________
consensus TTTTTTTGTAATGGAGACCTTGTATTATGGTTATACAATGTTACGTGTTTGGTTGTATTG