Contig 010799:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF008G05Sequence368010799 (4)ref|XP_007050704.1|7e-05Mitochondrial transcription termination factor family protein isoform 1 [Theobr777007036 (2)ref|XP_009628723.1|329PREDICTED: uncharacterized protein LOC104119034 [Nicotiana tomentosiformis]
JMSF034D07Sequence702010799 (4)ref|XP_007050704.1|5e-57Mitochondrial transcription termination factor family protein isoform 1 [Theobr
JMSF034O07Sequence657010799 (4)ref|XP_007050704.1|8e-37Mitochondrial transcription termination factor family protein isoform 1 [Theobr565007036 (2)ref|XP_009628723.1|233PREDICTED: uncharacterized protein LOC104119034 [Nicotiana tomentosiformis]
JMSF041B03Sequence693010799 (4)ref|XP_007050704.1|8e-58Mitochondrial transcription termination factor family protein isoform 1 [Theobr612014068 (2)ref|WP_032158755.1|1e-113transposase, partial [Escherichia coli]

Alignment

This contig is upended


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JMSF041B03+                                                        ACTGCAGCCCAAAAC
JMSF034D07+                                                       CACTGCAGCCCAAAAC
                      ____________________________________________________________
consensus                                                         CACTGCAGCCCAAAAC
 
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JMSF041B03+           CAGGGGGTAATTATTGATGTCTTCAATTGTAAATCCCAGTTGGTGAAGGAAATCCACACG
JMSF034D07+           CAGGGGGTAATTATTGATGTCTTCAATTGTAAATCCCAGTTGGTGAAGGAAATCCACACG
                      ____________________________________________________________
consensus             CAGGGGGTAATTATTGATGTCTTCAATTGTAAATCCCAGTTGGTGAAGGAAATCCACACG
 
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JMSF041B03+           CTCTCGCATAACTTCAGCAGAGACAGGAAGCTCTAATCCATCAAGCTCATCAGGTATAAT
JMSF034D07+           CTCTCGCATAACTTCAGCAGAGACAGGAAGCTCTAATCCATCAAGCTCATCAGGTATAAT
JMSF034O07+              TCGCATAACTTCAGCAGAGACAGGAAGCTCTAATCCATCAAGCTCATCAGGTATAAT
                      ____________________________________________________________
consensus             CTCTCGCATAACTTCAGCAGAGACAGGAAGCTCTAATCCATCAAGCTCATCAGGTATAAT
 
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JMSF041B03+           ACCAATGCCTCTCAAGAATTCATAAACACGTGCACGGTTTGCTGCCCTTTCATTCTTCAT
JMSF034D07+           ACCAATGCCTCTCAAGAATTCATAAACACGTGCACGGTTTGCTGCACTTTCATTCTTCAT
JMSF034O07+           ACCAATGCCTCTCAAGAATTCATAAACACGTGCACGGTNTGCTGCCCTTTCATTCTTCAT
                      ____________________________________________________________
consensus             ACCAATGCCTCTCAAGAATTCATAAACACGTGCACGGTTTGCTGCCCTTTCATTCTTCAT
 
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JMSF041B03+           TTCTAACAAACTAGGATGAGTATACAAGGATGCAGCACTTTTCTGTCTTTGACTACCATT
JMSF034D07+           TTCTAACAAACTAGGATGAGTATACAAGGATGCAGCACTTTTCTGTCTTTGACTACCATT
JMSF034O07+           TTCTAACAAACTAGGATGAGTATACAAGGATGCAGCACTTTTCTGTCTTTGACTACCATT
                      ____________________________________________________________
consensus             TTCTAACAAACTAGGATGAGTATACAAGGATGCAGCACTTTTCTGTCTTTGACTACCATT
 
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JMSF041B03+           AACAGTTCCAGACTTGGACGATTTAAAATCTACAGCTCGGGATGAAAGTGTTCTACCCGC
JMSF034D07+           AACAGTTCCAGACTTGGACGATTTAAAATCTACAGCTCGGGATGAAAGTGTTCTACCCGC
JMSF034O07+           AACAGTTCCAGACTTGGACGATTTAAAATCTACAGCTCGGGATGAAAGTGTTCTACCCGC
                      ____________________________________________________________
consensus             AACAGTTCCAGACTTGGACGATTTAAAATCTACAGCTCGGGATGAAAGTGTTCTACCCGC
 
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JMSF041B03+           AGCAGAGCAGCGTAGCCTCATTATTGAGCTGTTCTTCTCATAGTGATGTAATATACATAA
JMSF034D07+           AGCAGAGCAGCGTAGCCTCATTATTGAGCTGTTCTTCTCATAGTGATGTAATATACATAA
JMSF008G05+                                   TGAGCTGTTCTTCTCATAGTGATGTAATATACATAA
JMSF034O07+           AGCAGAGCAGCGTAGCCTCATTATTGAGCTGTTCTTCTCATAGTGATGTAATATACATAA
                      ____________________________________________________________
consensus             AGCAGAGCAGCGTAGCCTCATTATTGAGCTGTTCTTCTCATAGTGATGTAATATACATAA
 
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JMSF041B03+           ATTCGAAGCTGAAATAAGTTGAGGTCTGGAGAATGCAAGGGCAGATAACTCACAATGTAC
JMSF034D07+           ATTCGAAGCTGAAATAAGTTGAGGTCTGGAGAATGCAAGGGCAGATAACTCACAATGTAC
JMSF008G05+           ATTCGAAGCTGAAATAAGTTGAGGTCTGGAGAATGCAAGGGCAGATAACTCACAATGTAC
JMSF034O07+           ATTCGAAGCTGAAATAAGTTGAGGTCTGGAGAATGCAAGGGCAGATAACTCACAATGTAC
                      ____________________________________________________________
consensus             ATTCGAAGCTGAAATAAGTTGAGGTCTGGAGAATGCAAGGGCAGATAACTCACAATGTAC
 
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JMSF041B03+           AAGCAAAAAGTTTGGTTTTGTAACGGCACTGTAGCATATGACATTCATATTTCCTGAGTC
JMSF034D07+           AAGCAAAAAGTTTGGTTTTGTAACGGCACTGTAGCATATGACATTCATATTTCCTGAGTC
JMSF008G05+           AAGCAAAAAGTTTGGTTTTGTAACGGCACTGTAGCATATGACATTCATATTTCCTGAGTC
JMSF034O07+           AAGCAAAAAGTTTGGTTTTGTAACGGCACTGTAGCATATGACATTCATATTTCCTGAGTC
                      ____________________________________________________________
consensus             AAGCAAAAAGTTTGGTTTTGTAACGGCACTGTAGCATATGACATTCATATTTCCTGAGTC
 
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JMSF041B03+           TGAATTGGCAAAACCCTCTTTGGTCAGGCGACTGGAAATCTGGAATGGCGGAGGCGTGAC
JMSF034D07+           TGAATTGGCAAAACCCTCTTTGGTCAGGCGACTGGAAATCTGGAATGGCGGAGGCGTGAC
JMSF008G05+           TGAATTGGCAAAACCCTCTTTGGTCAGGCGACTGGAAATCTGGAATGGCGGAGGCGTGAC
JMSF034O07+           TGAATTGGCAAAACCCTCTTTGGTCAGGCGACTGGAAATCTGGAATGGCGGAGGCGTGAC
                      ____________________________________________________________
consensus             TGAATTGGCAAAACCCTCTTTGGTCAGGCGACTGGAAATCTGGAATGGCGGAGGCGTGAC
 
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JMSF041B03+           AGCGACTCAGCGAGGGCAGAGCCGTGGCGGAGGGCGGATGCGTGGCACAGGCCGGAGGGC
JMSF034D07+           AGCGACTCAGCGAGGGCAGAGCCGTGGCGGAGGGCGGATGCGTGGCACAGGCCGGAGGGC
JMSF008G05+           AGCGACTCAGCGAGGGCAGAGCCGTGGCGGAGGGCGGATGCGTGGCACAGGCCGGAGGGC
JMSF034O07+           AGCGACTCAGCGAGGGCAGAGCCGTGGCGGAGGGCGGATGCGTGGCACAGGCCGGAGGGC
                      ____________________________________________________________
consensus             AGCGACTCAGCGAGGGCAGAGCCGTGGCGGAGGGCGGATGCGTGGCACAGGCCGGAGGGC
 
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JMSF041B03+           GGAGGGCGAGGGCAAGTGGTGAGCCGTCGATTTGTCGAGGGGGTAGGGTTCGATGAAGTC
JMSF034D07+           GGAGGGCGAGGGCAAGTGGTGAGCCGTCGATTTGTCGAGGGGGTAGGGTTCGATGAAGTC
JMSF008G05+           GGAGGGCGAGGGCAAGTGGTGAGCCGTCGATTTGTCGAGGGGGTAGGGTTCGATGAAGTC
JMSF034O07+           GGAGGGCGAGGGCAAGTGGTGAGCCGTCGATTTGTCGAGGGGGTAGGNTTCGATGAAGTC
                      ____________________________________________________________
consensus             GGAGGGCGAGGGCAAGTGGTGAGCCGTCGATTTGTCGAGGGGGTAGGGTTCGATGAAGTC
 
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JMSF041B03+           TGATGAGTGAAGGCTGT                                           
JMSF034D07+           TGATGAGTGAAGGCTGTGAAGAAC                                    
JMSF008G05+           TGATGAGTGAAGGCTGTGAAGAAC                                    
JMSF034O07+           TGATGAGTGAAGGCTGTGAAGAACTGAAGACTGTCGAAATGGGAATTACGCTAGCATCCC
                      ____________________________________________________________
consensus             TGATGAGTGAAGGCTGTGAAGAACTGAAGACTGTCGAAATGGGAATTACGCTAGCATCCC