Contig 010797:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF010M01Sequence523010797 (4)gb|KJB29756.1|2e-63hypothetical protein B456_005G117600 [Gossypium raimondii]744010797 (4)gb|KJB29756.1|2e-82hypothetical protein B456_005G117600 [Gossypium raimondii]
JMSF034K24Sequence700010797 (4)gb|KJB29756.1|2e-82hypothetical protein B456_005G117600 [Gossypium raimondii]671010797 (4)gb|KJB29756.1|2e-82hypothetical protein B456_005G117600 [Gossypium raimondii]

Alignment

This contig is upended


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rJMFF010M01-                 GTTGTGCATTAGGTAAATTTCATTAAGCTAAATAGGAGTTAGTCACTAATAAC
                      ____________________________________________________________
consensus                    GTTGTGCATTAGGTAAATTTCATTAAGCTAAATAGGAGTTAGTCACTAATAAC
 
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rJMSF034K24-            GGTAAAACAAGAAATTAGGGTTAGCAATGCAGTTACAAGACCAAGAATCTTGATTTAT
rJMFF010M01-          AAGGTAAAACAAGAAATTAGGGTTAGCAATGCAGTTACAAGACCAAGAATCTTGATTTAT
JMSF034K24+                               GGTTAGCAATGCAGTTACAAGACCAAGAATCTTGATTTAT
                      ____________________________________________________________
consensus             AAGGTAAAACAAGAAATTAGGGTTAGCAATGCAGTTACAAGACCAAGAATCTTGATTTAT
 
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rJMSF034K24-          GCACTTTTACACAAGGATTGTTGCTTGGGAAGGCACACGCCCCGATGCCCGTCCAGCTAC
rJMFF010M01-          GCACTTTTACACAAGGATTGTTGCTTGGGAAGGCACACGCCCCGATGCCCGTCCAGCTAC
JMSF034K24+           GCACTTTTACACAAGGATTGTTGCTTGGGAAGGCACACGCCCCGATGCCCGTCCAGCTAC
                      ____________________________________________________________
consensus             GCACTTTTACACAAGGATTGTTGCTTGGGAAGGCACACGCCCCGATGCCCGTCCAGCTAC
 
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rJMSF034K24-          GACATTTCTTCGTGATAGAGGTGAAGACCTAGCCCGAGGCGAGCACAAGCACGACGGAAA
rJMFF010M01-          GACATTTCTTCGTGATAGAGGTGAAGACCTAGCCCGAGGCGAGCACAAGCACGACGGAAA
JMSF034K24+           GACATTTCTTCGTGATAGAGGTGAAGACCTAGCCCGAGGCGAGCACAAGCACGACGGAAA
                      ____________________________________________________________
consensus             GACATTTCTTCGTGATAGAGGTGAAGACCTAGCCCGAGGCGAGCACAAGCACGACGGAAA
 
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rJMSF034K24-          GCCATTGCCTCTGCCTTCTGCACAGCATCACCAAAGCCCGGCTCGTCTACTGAAACAGTG
rJMFF010M01-          GCCATTGCCTCTGCCTTCTGCACAGCATCACCAAAGCCCGGCTCGTCTACTGAAACAGTG
JMFF010M01+                           TCTGCACAGCATCACCAAAGCCCGGCTCGTCTACTGAAACAGTG
JMSF034K24+           GCCATTGCCTCTGCCTTCTGCACAGCATCACCAAAGCCCGGCTCGTCTACTGAAACAGTG
                      ____________________________________________________________
consensus             GCCATTGCCTCTGCCTTCTGCACAGCATCACCAAAGCCCGGCTCGTCTACTGAAACAGTG
 
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rJMSF034K24-          CCCGTTGATTCCCGGTATATCTCAGCATCAGTTCCATAAAGCGTCACTCTGTAGACAACT
rJMFF010M01-          CCCGTTGATTCCCGGTATATCTCAGCATCAGTTCCATAAAGCGTCACTCTGTAGACAACT
JMFF010M01+           CCCGTTGATTCCCGGTATATCTCAGCATCAGTTCCATAAAGCGTCACTCTGTAGACAACT
JMSF034K24+           CCCGTTGATTCCCGGTATATCTCAGCATCAGTTCCATAAAGCGTCACTCTGTAGACAACT
                      ____________________________________________________________
consensus             CCCGTTGATTCCCGGTATATCTCAGCATCAGTTCCATAAAGCGTCACTCTGTAGACAACT
 
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rJMSF034K24-          GATACCGACTTTCCATCAGCGGAGTATGTGATGCTTCTGACCTCGCCAGACCATTCCGGA
rJMFF010M01-          GATACCGACTTTCCATCAGCGGAGTATGTGATGCTTCTGACCTCGCCAGACCATTCCGGA
JMFF010M01+           GATACCGACTTTCCATCAGCGGAGTATGTGATGCTTCTGACCTCGCCAGACCATTCCGGA
JMSF034K24+           GATACCGACTTTCCATCAGCGGAGTATGTGATGCTTCTGACCTCGCCAGACCATTCCGGA
                      ____________________________________________________________
consensus             GATACCGACTTTCCATCAGCGGAGTATGTGATGCTTCTGACCTCGCCAGACCATTCCGGA
 
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rJMSF034K24-          GCATGTAAGTTCATGATCCTATTCACGATATGCCAGGGGATGTATTTGATGGGGAAACCG
rJMFF010M01-          GCATGTAAGTTCATGATCCTATTCACGATATGCCAGGGGATGTATTTGATGGGGAAACCG
JMFF010M01+           GCATGTAAGTTCATGATCCTATTCACGATATGCCAGGGGATGTATTTGATGGGGAAACCG
JMSF034K24+           GCATGTAAGTTCATGATCCTATTCACGATATGCCAGGGGATGTATTTGATGGGGAAACCG
                      ____________________________________________________________
consensus             GCATGTAAGTTCATGATCCTATTCACGATATGCCAGGGGATGTATTTGATGGGGAAACCG
 
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rJMSF034K24-          TCAGCTTCAGTACGAACTCTGATGAGGGAGTCGGGCACTTTCTTGTTGAGATCCTTCAGT
rJMFF010M01-          TCAGCTTCAGTACGAACTCTGATGAGGGAGTCGGGCACTTTCTTGTTGAGATCCTTCAGT
JMFF010M01+           TCAGCTTCAGTACGAACTCTGATGAGGGAGTCGGGCACTTTCTTGTTGAGATCCTTCAGT
JMSF034K24+           TCAGCTTCAGTACGAACTCTGATGAGGGAGTCGGGCACTTTCTTGTTGAGATCCTTCAGT
                      ____________________________________________________________
consensus             TCAGCTTCAGTACGAACTCTGATGAGGGAGTCGGGCACTTTCTTGTTGAGATCCTTCAGT
 
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rJMSF034K24-          ATTTCGGAAAGCGGGCGGCTGATTCCGGCGGTCGGAACGGAATCCTCTTCACCGTCCGCG
rJMFF010M01-          ATTTCGGAAAGCGGGCGGCTGATTCCGGCGGTCGGAACGGAATCCTCTTCACCGTCCGCG
JMFF010M01+           ATTTCGGAAAGCGGGCGGCTGATTCCGGCGGTCGGAACGGAATCCTCTTCACCGTCCGCG
JMSF034K24+           ATTTCGGAAAGCGGGCGGCTGATTCCGGCGGTCGGAACGGAATCCTCTTCACCGTCCGCG
                      ____________________________________________________________
consensus             ATTTCGGAAAGCGGGCGGCTGATTCCGGCGGTCGGAACGGAATCCTCTTCACCGTCCGCG
 
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rJMSF034K24-          GCATCGTCCTTTTCCCTCCGAGCGCTGCTGCCGCTACCGGCGGAGTAAAACGAGGAAGAA
rJMFF010M01-          GCATCGTCCTTTTCCCTCCGAGCGCTGCTGCCGCTACCGGCGGAGTAAAACGAGGAAGAA
JMFF010M01+           GCATCGTCCTTTTCCCTCCGAGCGCTGCTGCCGCTACCGGCGGAGTAAAACGAGGAAGAA
JMSF034K24+           GCATCGTCCTTTTCCCTCCGAGCGCTGCTGCCGCTACCGGCGGAGTAAAACGAGGAAGAA
                      ____________________________________________________________
consensus             GCATCGTCCTTTTCCCTCCGAGCGCTGCTGCCGCTACCGGCGGAGTAAAACGAGGAAGAA
 
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rJMSF034K24-          GAGGGTTTTGCGGAGAAGCCCCGCTGAAAAAGGGCGACCCTTTTTACCAGAGTATTACAT
rJMFF010M01-          GAGGGTTTTGCGGAGAAGCCCCGCTGAAAAAGGGCGACCCTTTTTACCAGAGTATTACAT
JMFF010M01+           GAGGGTTTTGCGGAGAAGCCCCGCTGAAAAAGGGCGACCCTTTTTACCAGAGTATTACAT
JMSF034K24+           GAGGGTTTTGCGGAGAAGCCCCGCTGAAAAAGGGCGACCCTTTTTACCAGAGTATTACAT
                      ____________________________________________________________
consensus             GAGGGTTTTGCGGAGAAGCCCCGCTGAAAAAGGGCGACCCTTTTTACCAGAGTATTACAT
 
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rJMSF034K24-          GTGGACCGAAATG                                               
rJMFF010M01-          GTGGACCGAAATGAAGAAGACGCCATTATCT                             
JMFF010M01+           GTGGACCGAAATGAAGAAGACGCCATTATCTCCGGTTCTTTGACGTCCGACGAGTCCCC 
JMSF034K24+           GTGGACCGAAATGAAGAAGACGCCATTATCTCCGGTTCTTTGACGTCCGACGAGCCCCCC
                      ____________________________________________________________
consensus             GTGGACCGAAATGAAGAAGACGCCATTATCTCCGGTTCTTTGACGTCCGACGAGTCCCCC