Contig 010796:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF014A02Sequence451010796 (3)ref|XP_009760981.1|1e-52PREDICTED: probable prolyl 4-hydroxylase 4 [Nicotiana sylvestris]779022486ref|XP_004241065.1|1e-104PREDICTED: probable prolyl 4-hydroxylase 4 [Solanum lycopersicum]
JMSF034J08Sequence699010796 (3)ref|XP_009604218.1|3e-125PREDICTED: probable prolyl 4-hydroxylase 4 [Nicotiana tomentosiformis] dbj|BAG86724010796 (3)ref|XP_004241065.1|4e-98PREDICTED: probable prolyl 4-hydroxylase 4 [Solanum lycopersicum]

Alignment

This contig is upended


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rJMSF034J08-                                                                 TGCAC
                      ____________________________________________________________
consensus                                                                    TGCAC
 
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rJMSF034J08-          AAAGGGATTAAACAAGATGAAAAAACAAACAGGGTAAATTACCCTTTCTGTGAAGCACAT
                      ____________________________________________________________
consensus             AAAGGGATTAAACAAGATGAAAAAACAAACAGGGTAAATTACCCTTTCTGTGAAGCACAT
 
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rJMSF034J08-          AAATAAGACGAACATTCTTGTATTTGGTAATGAATCAATAAAGATGGGATAGAGCGAAGG
                      ____________________________________________________________
consensus             AAATAAGACGAACATTCTTGTATTTGGTAATGAATCAATAAAGATGGGATAGAGCGAAGG
 
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rJMSF034J08-          ACAAAATCTAATTAAATGAAGAACGTGGAATTTGTGTTGAAAGCATCAAATTTCGATCCA
                      ____________________________________________________________
consensus             ACAAAATCTAATTAAATGAAGAACGTGGAATTTGTGTTGAAAGCATCAAATTTCGATCCA
 
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rJMSF034J08-          GAGGTTAACATTGTCTGCAAGCCTTTTTGCAGTAACCTGGAACGTCTGGAGTTCCCACCA
                      ____________________________________________________________
consensus             GAGGTTAACATTGTCTGCAAGCCTTTTTGCAGTAACCTGGAACGTCTGGAGTTCCCACCA
 
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rJMSF034J08-          TATACTCGGGATTCTTGGTGCATTCTCCGAGAGCAGCCCACCTCTCACAGTTATCGTGTT
                      ____________________________________________________________
consensus             TATACTCGGGATTCTTGGTGCATTCTCCGAGAGCAGCCCACCTCTCACAGTTATCGTGTT
 
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rJMSF034J08-          TGTCAGTGCAGCTCCCGATGGATATGATCCTGTCAAATGAATCCACATGAATCCACTTTG
                      ____________________________________________________________
consensus             TGTCAGTGCAGCTCCCGATGGATATGATCCTGTCAAATGAATCCACATGAATCCACTTTG
 
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rJMSF034J08-          TTGCTGACCACTTCTCGCCCTCGATCACAGGACAGCCACGATGGAGGCTATCGGTATCGG
                      ____________________________________________________________
consensus             TTGCTGACCACTTCTCGCCCTCGATCACAGGACAGCCACGATGGAGGCTATCGGTATCGG
 
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rJMSF034J08-          GAGTGGCATCTGGATGGAGATTGAAGAAAAGAAGCGCATCTCCTCTATGAGGCTTCACTG
                      ____________________________________________________________
consensus             GAGTGGCATCTGGATGGAGATTGAAGAAAAGAAGCGCATCTCCTCTATGAGGCTTCACTG
 
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rJMSF034J08-          CAATGCCTTTTTTGGCACACTCGGATAGATCATCATCTGAAACCACTGACCTAAGATGAG
                      ____________________________________________________________
consensus             CAATGCCTTTTTTGGCACACTCGGATAGATCATCATCTGAAACCACTGACCTAAGATGAG
 
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rJMSF034J08-          ATGATTCCTCTGCTTTAGGGAACACAGTTTCACCACCCTTTCCAACATCACTAAGATACA
JMSF034J08+                            GGGAACACAGTTTCACCACCCTTTCCAACATCACTAAGATACA
                      ____________________________________________________________
consensus             ATGATTCCTCTGCTTTAGGGAACACAGTTTCACCACCCTTTCCAACATCACTAAGATACA
 
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rJMSF034J08-          TGAGTACAGTCGCTATGCGGTGTCCACCACGAACAATATTAACCTTGTCCAAGAAATAAT
JMSF034J08+           TGAGTACAGTCGCTATGCGGTGTCCACCACGAACAATATTAACCTTGTCCAAGAAATAAT
                      ____________________________________________________________
consensus             TGAGTACAGTCGCTATGCGGTGTCCACCACGAACAATATTAACCTTGTCCAAGAAATAAT
 
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rJMSF034J08-          CATAGTGTGGTTCATATTTCTGCCCTTCCTCATAGTGTAGTACTTG              
JMSF034J08+           CATAGTGTGGTTCATATTTCTGCCCTTCCTCATAGTGTAGTACTTGAATGGATTCTCCAT
                      ____________________________________________________________
consensus             CATAGTGTGGTTCATATTTCTGCCCTTCCTCATAGTGTAGTACTTGAATGGATTCTCCAT
 
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JMSF014A02+                      AGAAAAGTCCAAGTGGCAATCTTCTCCTCTATCCCAGAAACAATTGGAT
JMSF034J08+           TATCTTTGGGCAGAAAAGTCCAAGTTGCAATCTTTTCTTCGATCCCAGAAACAATTGGAT
                      ____________________________________________________________
consensus             TATCTTTGGGCAGAAAAGTCCAAGTTGCAATCTTTTCTTCTATCCCAGAAACAATTGGAT
 
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JMSF014A02+           CCTTAGCTTTACGAATGAACATTCCAGAGCTAGTCCTAACTTCACTGAGTTTACTCTTTC
JMSF034J08+           CCTTATCTTTAGGAATGAACATTCCGGAGCTAGTTCTAACTTCACTTAGCTTACCCTTCC
                      ____________________________________________________________
consensus             CCTTATCTTTAGGAATGAACATTCCGGAGCTAGTTCTAACTTCACTTAGTTTACTCTTTC
 
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JMSF014A02+           CCGACTCATTATCTGCAACATACGATCTTTTCAGCTCCGATTTTGCGAGAGATATCATAT
JMSF034J08+           CCGACTCACTATCCGCCACCACTGATCTCTTCAGCTCTGATTTCGCAAGAGAAATCAAAT
                      ____________________________________________________________
consensus             CCGACTCATTATCTGCCACCTCTGATCTTTTCAGCTCTGATTTTGCGAGAGATATCATAT
 
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JMSF014A02+           GATTGCATTCTTCATCCGTAAGGAAACCTTCATACACAAAAGCTCTCGGTTTCCATGAAA
JMSF034J08+           GGTTGCATTCTTCCTCGGTAAGGAAACCTTCATACACAAAAGCTCTGGGTTTCCAAGAAA
                      ____________________________________________________________
consensus             GGTTGCATTCTTCCTCGGTAAGGAAACCTTCATACACAAAAGCTCTGGGTTTCCATGAAA
 
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JMSF014A02+           TTTGCTTGACTTTAGACGGATT                                      
JMSF034J08+           TTTGCTTGACCTTAGATGGATTAATGACTGGTGAGCCTGAAGATTCATGCACGATCGACG
                      ____________________________________________________________
consensus             TTTGCTTGACTTTAGATGGATTAATGACTGGTGAGCCTGAAGATTCATGCACGATCGACG
 
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JMSF034J08+           CGATCACGGAGAAGAGGAAGAAGAGAAGACGAACGAAATCCATGATCTCCCCTGTGGATC
                      ____________________________________________________________
consensus             CGATCACGGAGAAGAGGAAGAAGAGAAGACGAACGAAATCCATGATCTCCCCTGTGGATC