Contig 010792:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF029N17Sequence536010792 (6)ref|XP_009591425.1|1e-90PREDICTED: AP-4 complex subunit mu [Nicotiana tomentosiformis]742001131 (5)ref|XP_009591425.1|7e-102PREDICTED: AP-4 complex subunit mu [Nicotiana tomentosiformis]
JMSF019C23Sequence239010792 (6)ref|XP_011074223.1|2e-21PREDICTED: AP-4 complex subunit mu [Sesamum indicum]788001131 (5)ref|XP_009591425.1|5e-115PREDICTED: AP-4 complex subunit mu [Nicotiana tomentosiformis]
JMSF020L02Sequence677010792 (6)ref|XP_009591425.1|3e-123PREDICTED: AP-4 complex subunit mu [Nicotiana tomentosiformis]765001131 (5)ref|XP_009591425.1|2e-116PREDICTED: AP-4 complex subunit mu [Nicotiana tomentosiformis]
JMSF032L01Sequence666010792 (6)ref|XP_009591425.1|2e-126PREDICTED: AP-4 complex subunit mu [Nicotiana tomentosiformis]703018263ref|XP_006338069.1|7e-103PREDICTED: AP-4 complex subunit mu-like isoform X2 [Solanum tuberosum]
JMSF034D16Sequence699010792 (6)ref|XP_009591425.1|1e-128PREDICTED: AP-4 complex subunit mu [Nicotiana tomentosiformis]741001131 (5)ref|XP_009591425.1|6e-110PREDICTED: AP-4 complex subunit mu [Nicotiana tomentosiformis]
JMSF049H07Sequence694010792 (6)ref|XP_009591425.1|2e-127PREDICTED: AP-4 complex subunit mu [Nicotiana tomentosiformis]734001131 (5)ref|XP_009591425.1|1e-108PREDICTED: AP-4 complex subunit mu [Nicotiana tomentosiformis]

Alignment

This contig is upended


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JMSF032L01+                                                    GAATAGTGCCATCAATTTC
                      ____________________________________________________________
consensus                                                      GAATAGTGCCATCAATTTC
 
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JMSF032L01+           AGAAGTCAATATATATCCACTTGAGCTGAATGTAATGCTTATTTTCTCAATTACATCCAC
JMSF049H07+                                    CTGAATGTAAGGCTTATTTTCTCAATGATATCCAC
JMSF020L02+                                                     TTTCTCAATGATATCCAC
JMSF034D16+                                    CTGAATGTAAGGCTTATTTTCTCAATGATATCCAC
                      ____________________________________________________________
consensus             AGAAGTCAATATATATCCACTTGAGCTGAATGTAAGGCTTATTTTCTCAATGATATCCAC
 
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JMSF032L01+           AAATATTTCCTCCCTCTTTCTACCACCTGGCTCATTCGCTACAACAGACTTAGTAATAGC
JMSF049H07+           AAAAATTTCCTCCCTCTTTCTACCAGCTGGTTCATTTGCTACAACAGACTTTGTAATAGC
JMSF020L02+           AAAAATTTCCTCCCTCTTTCTACCAGCTGGTTCATTTGCTACAACAGACTTTGTAATAGC
JMSF034D16+           AAAAATTTCCTCCCTCTTTCTACCAGCTGGTTCATTTGCTACAACAGACTTTGTAATAGC
                      ____________________________________________________________
consensus             AAAAATTTCCTCCCTCTTTCTACCAGCTGGTTCATTTGCTACAACAGACTTTGTAATAGC
 
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JMSF032L01+           TGTCCCTGGCATTCTTTTCGTCCCTTGCATAAATATAGCAGAAGGACTGATTGGTGATAA
JMFF029N17+                                                                 TGGCAA
JMSF049H07+           CGTCCCAGGCATTCTTTTTGTCCCTTGCATAAATATAGCAGCTGGGCCGATTGGTGGCAA
JMSF020L02+           CGTCCCAGGCATTCTTTTTGTCCCTTGCATAAATATAGCAGCTGGGCCGATTGGTGGCAA
JMSF034D16+           CGTCCCAGGCATTCTTTTTGTCCCTTGCATAAATATAGCAGCTGGGCCGATTGGTGGCAA
                      ____________________________________________________________
consensus             CGTCCCAGGCATTCTTTTTGTCCCTTGCATAAATATAGCAGCTGGGCCGATTGGTGGCAA
 
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JMSF032L01+           ATGTCCAGCATCAATAACAATTGGCTCATTAAATATATAGGATTTCAAGACCTCAGTGGA
JMFF029N17+           ACGCCCACCATCAACTACAATTGGCTCATTAAATATGTAGGATTTCAAGACTTCAGTGGA
JMSF049H07+           ACGCCCACCATCAACTACAATTGGCTCATTAAATATGTAGGATTTCAAGACTTCAGTGGA
JMSF020L02+           ACGCCCACCATCAACTACAATTGGCTCATTAAATATGTAGGATTTCAAGACTTCAGTGGA
JMSF034D16+           ACGCCCACCATCAACTACAATTGGCTCATTAAATATGTAGGATTTCAAGACTTCAGTGGA
                      ____________________________________________________________
consensus             ACGCCCACCATCAACTACAATTGGCTCATTAAATATGTAGGATTTCAAGACTTCAGTGGA
 
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JMSF032L01+           TGTTGTTTGAACATAACCAAAATCAATGACTTCATCAAGAAGCTCATACACCAGCACAAA
JMFF029N17+           TGTCGTTTGGACATAACCAAAANCAATCACTTCATCAAGTAGCTCATACACAAGTACAAA
JMSF049H07+           TGTCGTTTGGACATAACCAAAATCAATCACTTCATCAAGTAGCTCATACACAAGTACAAA
JMSF020L02+           TGTCGTTTGGACATAACCAAAATCAATCACTTCATCAAGTAGCTCATACACAAGTACAAA
JMSF034D16+           TGTCGTTTGGACATAACCAAAATCAATCACTTCATCAAGTAGCTCATACACAAGTACAAA
                      ____________________________________________________________
consensus             TGTCGTTTGGACATAACCAAAATCAATCACTTCATCAAGTAGCTCATACACAAGTACAAA
 
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JMSF032L01+           ATTTTTTCGCAGGGAGTCTTCATTGAGAATGCCAAGGTAATCTTTGGTGACACGTGCAAT
JMFF029N17+           ATTTTTTCTCAAGGAATCTTCATTCAGAATGCCAAGGTAATCTTTTGTAACACGTGCAAT
JMSF049H07+           ATTTTTTCTCAAGGAATCTTCATTCAGAATGCCAAGGTAATCTTTTGTAACACGTGCAAT
JMSF020L02+           ATTTTTTCTCAAGGAATCTTCATTCAGAATGCCAAGGTAATCTTTTGTAACACGTGCAAT
JMSF034D16+           ATTTTTTCTCAAGGAATCTTCATTCAGAATGCCAAGGTAATCTTTTGTAACACGTGCAAT
                      ____________________________________________________________
consensus             ATTTTTTCTCAAGGAATCTTCATTCAGAATGCCAAGGTAATCTTTTGTAACACGTGCAAT
 
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JMSF032L01+           CCTTTGCAGAAGCTCCAACACTAGAGAAGGTGATAAATTGGTCCTTGTAGTTGCAACAAA
JMFF029N17+           CCTCTGTAGAAGCTCCAGCACAAGAGAAGGTGACACATTGGTCCTAGTAGTTGCAGCAAA
JMSF049H07+           CCTCTGTAGAAGCTCCAGCACAAGAGAAGGTGACACATTGGTCCTAGTAGTTGCAGCAAA
JMSF020L02+           CCTCTGTAGAAGCTCCAGCACAAGAGAAGGTGACACATTGGTCCTAGTAGTTGCAGCAAA
JMSF034D16+           CCTCTGTAGAAGCTCCAGCACAAGAGAAGGTGACACATTGGTCCTAGTAGTTGCAGCAAA
                      ____________________________________________________________
consensus             CCTCTGTAGAAGCTCCAGCACAAGAGAAGGTGACACATTGGTCCTAGTAGTTGCAGCAAA
 
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JMSF032L01+           AAGGAGGCCAACAAC                                             
JMFF029N17+           AAGCAGACCAACAACCTTCACATGGAAGTAGTTTACACCATCCACATTAAATACAGGTGG
JMSF049H07+           AAGCAGACCAACAACCTTCACATGGAAGTAGTTTACACCATCCACATTAAATACAGGTGG
JMSF020L02+           AAGCAGACCAACAACCTTCACATGGAAGTAGTTTACACCATCCACATTAAATACAGGTGG
JMSF034D16+           AAGCAGACCAACAACCTTCACATGGAAGTAGTTTACACCATCCACATTAAATACAGGTGG
                      ____________________________________________________________
consensus             AAGCAGACCAACAACCTTCACATGGAAGTAGTTTACACCATCCACATTAAATACAGGTGG
 
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JMFF029N17+           TGCTTCCTCTTCACCATCTTCTTTCCAAAACTTTACTTTGCGGAAGAAAATCTCTGCACT
JMSF049H07+           TGCTTCCTCTTCACCATCTTCTTTCCAAAACTTTACTTTGCGGAAGAAAATCTCTGCACT
JMSF019C23+           TGCTTCCTCTTCACCATCTTCTTTCCAAAACTTTACTTTGCGGAAGAAAATCTCTGCACT
JMSF020L02+           TGCTTCCTCTTCACCATCTTCTTTCCAAAACTTTACTTTGCGGAAGAAAATCTCTGCACT
JMSF034D16+           TGCTTCCTCTTCACCATCTTCTTTCCAAAACTTTACTTTGCGGAAGAAAATCTCTGCACT
                      ____________________________________________________________
consensus             TGCTTCCTCTTCACCATCTTCTTTCCAAAACTTTACTTTGCGGAAGAAAATCTCTGCACT
 
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JMFF029N17+           TCCTTTTTGTACATCTCCTCTATAGTCGCGGAAGACAATGCTGTCGCCCCTCTGCGAGAG
JMSF049H07+           TCCTTTTTGTACATCTCCTCTATAGTCGCGGAAGACAATGCTGTCGCCCCTCTGCGAGAG
JMSF019C23+           TCCTTTTTGTACATCTCCTCNATAGTCGCGGAAGACAATGCTGTCGCCCCTCTGCGAGAG
JMSF020L02+           TCCTTTTTGTACATCTCCTCNATAGTCGCGGAAGACAATGCTGTCGCCCCTCTGCGAGAG
JMSF034D16+           TCCTTTTTGTACATCTCCTCTATAGTCGCGGAAGACAATGCTGTCGCCCCTCTGCGAGAG
                      ____________________________________________________________
consensus             TCCTTTTTGTACATCTCCTCTATAGTCGCGGAAGACAATGCTGTCGCCCCTCTGCGAGAG
 
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JMFF029N17+           CACGAAGAACTGCGAGATCATCCCTCACTGCTACTGTTAAATCTTCAGATCGTGAGATCT
JMSF049H07+           CACGAAGAACTGCGAGATCATCCCTCACTGCTACTGTTAAATCTTCAGATCGTGAGCTCT
JMSF019C23+           CACGAAGAACTGCGAGATCATCCCTCACTGCTACTGTTAAATCTTCAGATCGTGAGCTCT
JMSF020L02+           CACGAAGAACTGCGAGATCATCCCTCACTGCTACTGTTAAATCTTCAGATCGTGAGCTCT
JMSF034D16+           CACGAAGAACTGCGAGATCATCCCTCACTGCTACTGTTAAATCTTCAGATCGTGAGCTCT
                      ____________________________________________________________
consensus             CACGAAGAACTGCGAGATCATCCCTCACTGCTACTGTTAAATCTTCAGATCGTGAGCTCT
 
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JMFF029N17+           CTGTGATCTTGGCTAGGGGCTACTGCGTCTTTGATTCGATCGAGGACGTT          
JMSF049H07+           CTGTGATCTTGGCTAGGGGCTACTGCGTCTTTGATTCGATCGAGGTCGTTACAGCTCCC 
JMSF019C23+           CTGTGATCTTGGCTAGGGGCTACTGCGTCTTTGATTCGATCGAGGTCGTTACAGCTCCC 
JMSF020L02+           CTGTGATCTTGGCTAGGGGCTACTGCGTCTTTGATTCGATCGAGGTCGTTACAGCTCCC 
JMSF034D16+           CTGTGATCTTGGCTAGGGGCTACTGCGTCTTTGATTCGATCGAGGTCGTTACAGCTCCCC
                      ____________________________________________________________
consensus             CTGTGATCTTGGCTAGGGGCTACTGCGTCTTTGATTCGATCGAGGTCGTTACAGCTCCCC