| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF042H09 | Sequence | 627 | 010789 (8) | sp|Q41359.1|PR1_SAMNI | 3e-60 | RecName: Full=Pathogenesis-related protein PR-1 type; Flags: Precursor [Sambucu | 393 | 010789 (8) | ref|XP_002459696.1| | 2e-19 | hypothetical protein SORBIDRAFT_02g008970 [Sorghum bicolor] gb|EER96217.1| hypot |
| JMFN006L16 | Sequence | 620 | 010789 (8) | ref|XP_008652242.1| | 8e-43 | PREDICTED: pathogenesis-related protein 1-like [Zea mays] tpg|DAA60242.1| TPA: h | |||||
| JMFN012P07 | Sequence | 627 | 010789 (8) | sp|Q41359.1|PR1_SAMNI | 3e-60 | RecName: Full=Pathogenesis-related protein PR-1 type; Flags: Precursor [Sambucu | |||||
| JMFN029B20 | Sequence | 604 | 010789 (8) | sp|Q41359.1|PR1_SAMNI | 3e-60 | RecName: Full=Pathogenesis-related protein PR-1 type; Flags: Precursor [Sambucu | |||||
| JMFN038K05 | Sequence | 619 | 010789 (8) | sp|Q41359.1|PR1_SAMNI | 4e-50 | RecName: Full=Pathogenesis-related protein PR-1 type; Flags: Precursor [Sambucu | |||||
| JMSF034B03 | Sequence | 709 | 010789 (8) | sp|Q41359.1|PR1_SAMNI | 8e-60 | RecName: Full=Pathogenesis-related protein PR-1 type; Flags: Precursor [Sambucu | 729 | 010789 (8) | sp|Q41359.1|PR1_SAMNI | 1e-59 | RecName: Full=Pathogenesis-related protein PR-1 type; Flags: Precursor [Sambucu |
This contig is upended
. : . : . : . : . : . :
JMFN006L16- GAGAACTAGTC
____________________________________________________________
consensus GAGAACTAGTC
. : . : . : . : . : . :
JMFN006L16- TCGAGXXXXXXXXXXXXXXXXXXXXXAAACTAAAGAGAAGAAAATTATATATATTATGTT
rJMFF042H09- AAAATTATATATATTATGTT
JMFN038K05+ AAAATTATATATATTATGTT
____________________________________________________________
consensus TCGAGNNNNNNNNNNNNNNNNNNNNNAAACTAAAGAGAAGAAAATTATATATATTATGTT
. : . : . : . : . : . :
JMFN006L16- GATAACAAGATCAGAACATACACTTTTGAAGTCTACATACACT-GCTAGCAGCCTCTAGG
rJMFF042H09- GATAACAAGATCAAAACATACACTTTTGAAGTCTACATACCCT-GCTAGCAGCCTCTAGG
JMFN038K05+ GATAACAAGATCAGAACATACACTTTTGAAGTCTACATACACT-GCTAGCAGCCTCTAGG
rJMSF034B03- TACACTTTTGAAGTCTACATACACTGGCTAGCAGCCTCTAGG
____________________________________________________________
consensus GATAACAAGATCAGAACATACACTTTTGAAGTCTACATACACT-GCTAGCAGCCTCTAGG
. : . : . : . : . : . :
JMFN006L16- CCTTGTTTTCTCCATAGTACATGGTGTTTAATTATATATTGCTCAAGCATGCATGCATGC
rJMFF042H09- CCTTGTTTTCTCCATAGAACATGGGGTTTAATTATATATTGCTCAAGCATGCATGCATGC
JMFN038K05+ CCTTGTTTTCTCCATAGTACATGGTGTTTAATTATATATTGCTCAAGCATGCATGCATGC
JMFN012P07+ TGC
rJMSF034B03- CCTTGTTTTCTCCATAGTACATGGTGTTTAATTATATATTGCTCAAGCATGCATGCATGC
JMSF034B03+ CCATAGTACATGGTGTTTAATTATATATTGCTCAAGCATGCATGCATGC
____________________________________________________________
consensus CCTTGTTTTCTCCATAGTACATGGTGTTTAATTATATATTGCTCAAGCATGCATGCATGC
. : . : . : . : . : . :
JMFN006L16- ATGGCTGCTTATTTAATTTCATGAAAGCCGTACGTACGTCCGGTAGACCGGTACGACTTG
rJMFF042H09- ATGGCTGCTTATTTAATTTCATGAAAGCCGTACGTACGTCCGGTAAACCGGTACAACTTG
JMFN038K05+ ATGGCTGCTTATTTAATTTCATGAAAGCCGTACGTACGTCCGGTAGACCGGTACGACTTG
JMFN029B20+ ATGAAAGCCGTACGTACGTCCGGTAGACCGGTACGACTTG
JMFN012P07+ ATGGCTGCTTATTTAATTTCATGAAAGCCGTACGTACGTCCGGTAGACCGGTACGACTTG
rJMSF034B03- ATGGCTGCTTATTTAATTTCATGAAAGCCGTACGTACGTCCGGTAGACCGGTACGACTTG
JMFF042H09+ GTACGTACGTCCGGTAGACCGGTACGACTTG
JMSF034B03+ ATGGCTGCTTATTTAATTTCATGAAAGCCGTACGTACGTCCGGTAGACCGGTACGACTTG
____________________________________________________________
consensus ATGGCTGCTTATTTAATTTCATGAAAGCCGTACGTACGTCCGGTAGACCGGTACGACTTG
. : . : . : . : . : . :
JMFN006L16- TTTATTAGGGTTTACATGACTGTAAGTTGATCAGTATGGTCTCTGTCCGACATAATTGCC
rJMFF042H09- TTTATTAGGGTTTACATGACTGTAAGTTGATCAGTATGGTCTCTGTCCGACATAATTGCC
JMFN038K05+ TTTATTAGGGTTTACATGACTGTAAGTTGATCAGTATGGTCTCTGTCCGACATAATTGCC
JMFN029B20+ TTTATTAGGGTTTACATGACTGTAAGTTGATCAGTATGGTCTCTGTCCGACATAATTGCC
JMFN012P07+ TTTATTAGGGTTTACATGACTGTAAGTTGATCAGTATGGTCTCTGTCCGACATAATTGCC
rJMSF034B03- TTTATTAGGGTTTACATGACTGTAAGTTGATCAGTATGGTCTCTGTCCGACATAATTGCC
JMFF042H09+ -TTATTAGGGTTTACATGACTGTAAGTTGATCAGTATGGTCTCTGTCCGACATAATTGCC
JMSF034B03+ TTTATTAGGGTTTACATGACTGTAAGTTGATCAGTATGGTCTCTGTCCGACATAATTGCC
____________________________________________________________
consensus TTTATTAGGGTTTACATGACTGTAAGTTGATCAGTATGGTCTCTGTCCGACATAATTGCC
. : . : . : . : . : . :
JMFN006L16- GGGAGGAGAATAGTTGCAGATAACAAAGTATCCTAAATTGTTTCTGCACTGAATCCTAGC
rJMFF042H09- GGGAGGAAAATAGTTGCAGATAACAAAGTATCCTAAATTGTTTCTGCACTGAATCCTAGC
JMFN038K05+ GGGAGGAGAATAGTTGCAGATAACAAAGTATCCTAAATTGTTTCTGCACTGAATCCTAGC
JMFN029B20+ GGGAGGAGAATAGTTGCAGATAACAAAGTATCCTAAATTGTTTCTGCACTGAATCCTAGC
JMFN012P07+ GGGAGGAGAATAGTTGCAGATAACAAAGTATCCTAAATTGTTTCTGCACTGAATCCTAGC
rJMSF034B03- GGGAGGAGAATAGTTGCAGATAACAAAGTATCCTAAATTGTTTCTGCACTGAATCCTAGC
JMFF042H09+ GGGAGGAGAATAGTTGCAGATAACAAAGTATCCTAAATTGTTTCTGCACTGAATCCTAGC
JMSF034B03+ GGGAGGAGAATAGTTGCAGATAACAAAGTATCCTAAATTGTTTCTGCACTGAATCCTAGC
____________________________________________________________
consensus GGGAGGAGAATAGTTGCAGATAACAAAGTATCCTAAATTGTTTCTGCACTGAATCCTAGC
. : . : . : . : . : . :
JMFN006L16- ACACCCCACCTTTGTCGAGCTCCTCCAAACCACCTGCGTGTAGTGCCCACACGACTCCCC
rJMFF042H09- ACACCCCACCTTTGTCGAGCTCCTCCAAACCACCTGCGTGTAGTGCCCACACGACTCCCC
JMFN038K05+ ACACCCCACCTTTGTCGAGCTCCTCCAAACCACCTGCGTGTAGTGCCCACACGACTCCCC
JMFN029B20+ ACACCCCACCTTTGTCGAGCTCCTCCAAACCACCTGCGTGTAGTGCCCACACGACTCCCC
JMFN012P07+ ACACCCCACCTTTGTCGAGCTCCTCCAAACCACCTGCGTGTAGTGCCCACACGACTCCCC
rJMSF034B03- ACACCCCACCTTTGTCGAGCTCCTCCAAACCACCTGCGTGTAGTGCCCACACGACTCCCC
JMFF042H09+ ACACCCCACCTTTGTCGAGCTCCTCCAAACCACCTGCGTGTAGTGCCCACACGACTCCCC
JMSF034B03+ ACACCCCACCTTTGTCGAGCTCCTCCAAACCACCTGCGTGTAGTGCCCACACGACTCCCC
____________________________________________________________
consensus ACACCCCACCTTTGTCGAGCTCCTCCAAACCACCTGCGTGTAGTGCCCACACGACTCCCC
. : . : . : . : . : . :
JMFN006L16- CGGCGGCGCGTTGCAAGAATTGGTGGCGTAGTTGTACCACTTCTTCTCATCAACCCACAA
rJMFF042H09- CGGCGGCGCGT
JMFN038K05+ CGGCGGCGCGTTGCAAGAATTGGTGGCGTAGTTGTACCACTTCTTCTCATCAACCCACAA
JMFN029B20+ CGGCGGCGCGTTGCAAGAATTGGTGGCGTAGTTGTACCACTTCTTCTCATCAACCCACAA
JMFN012P07+ CGGCGGCGCGTTGCAAGAATTGGTGGCGTAGTTGTACCACTTCTTCTCATCAACCCACAA
rJMSF034B03- CGGCGGCGCGTTGCAAGAATTGGTGGCGTAGTTGTACCACTTCTTCTCATCAACCCACAA
JMFF042H09+ CGGCGGCGCGTTGCAAGAATTGGTGGCGTAGTTGTACCACTTCTTCTCATCAACCCACAA
JMSF034B03+ CGGCGGCGCGTTGCAAGAATTGGTGGCGTAGTTGTACCACTTCTTCTCATCAACCCACAA
____________________________________________________________
consensus CGGCGGCGCGTTGCAAGAATTGGTGGCGTAGTTGTACCACTTCTTCTCATCAACCCACAA
. : . : . : . : . : . :
JMFN006L16- CTCCACCGCCCTCCTCCCCGTCATGAAGGCCCCGCTTCCCCATGCTAGGTTTTCTCCGTA
JMFN038K05+ CTCCACCGCCCTCCTCCCCGTCATGAAGGCCCCACTTCCCCATGCTAGGTTTTCTCCGTA
JMFN029B20+ CTCCACCGCCCTCCTCCCCGTCATGAAGGCCCCGCTTCCCCATGCTAGGTTTTCTCCGTA
JMFN012P07+ CTCCACCGCCCTCCTCCCCGTCATGAAGGCCCCGCTTCCCCATGCTAGGTTTTCTCCGTA
rJMSF034B03- CTCCACCGCCCTCCTCCCCGTCATGAAGGCCCCGCTTCCCCATGCTAGGTTTTCTCCGTA
JMFF042H09+ CTCCACCGCCCTCCTCCCCGTCATGAAGGCCCCGCTTCCCCATGCTAGGTTTTCTCCGTA
JMSF034B03+ CTCCACCGCCCTCCTCCCCGTCATGAAGGCCCCGCTTCCCCATGCTAGGTTTTCTCCGTA
____________________________________________________________
consensus CTCCACCGCCCTCCTCCCCGTCATGAAGGCCCCGCTTCCCCATGCTAGGTTTTCTCCGTA
. : . : . : . : . : . :
JMFN006L16- CCGCCGGTCACCAGAGTGGATGAGTTTGCAATCCCCGGCCCGCTTGTTAGCGTAGCTTTG
JMFN038K05+ CCGCCGGTCACCAGAGTGGATGAGTTTGCAATCCCCGGCCCGCTTGTTAGCGTAGCTTTG
JMFN029B20+ CCGCCGGTCACCAGAGTGGATGAGTTTGCAATCCCCGGCCCGCTTGTTAGCGTAGCTTTG
JMFN012P07+ CCGCCGGTCACCAGAGTGGATGAGTTTGCAATCCCCGGCCCGCTTGTTAGCGTAGCTTTG
rJMSF034B03- CCGCCGGTCACCAGAGTGGATGAGTTTGCAATCCCCGGCCCGCTTGTTAGCGTAGCTTTG
JMFF042H09+ CCGCCGGTCACCAGAGTGGATGAGTTTGCAATCCCCGGCCCGCTTGTTAGCGTAGCTTTG
JMSF034B03+ CCGCCGGTCACCAGAGTGGATGAGTTTGCAATCCCCGGCCCGCTTGTTAGCGTAGCTTTG
____________________________________________________________
consensus CCGCCGGTCACCAGAGTGGATGAGTTTGCAATCCCCGGCCCGCTTGTTAGCGTAGCTTTG
. : . : . : . : . : . :
JMFN006L16- GGCAACCGCC
JMFN038K05+ GGCAACCGCCGCCACGTTGTTGTCCCATGTCATCGGCCCGACGCCGACGGCTTGGC
JMFN029B20+ GGCAACCGCCGCCACGTTGTTGTCCCATGTCATCGGCCCGACGCCGACGGCTTGGCGAGC
JMFN012P07+ GGCAACCGCCGCCACGTTGTTGTCCCATGTCATCGGCCCGACGCCGACGGCTTGGCGAGC
rJMSF034B03- GGCAACCGCCGCCACGTTGTTGTCCCATGTCATCGGCCCGACGCCGACGGCTTGGCGAGC
JMFF042H09+ GGCAACCGCCGCCACGTTGTTGTCCCATGTCATCGGCCCGACGCCGACGGCTTGGCGAGC
JMSF034B03+ GGCAACCGCCGCCACGTTGTTGTCCCATGTCATCGGCCCGACGCCGACGGCTTGGCGAGC
____________________________________________________________
consensus GGCAACCGCCGCCACGTTGTTGTCCCATGTCATCGGCCCGACGCCGACGGCTTGGCGAGC
. : . : . : . : . : . :
JMFN029B20+ GGCGTTGTGAACGGCGAGGTAATCTTGAGGTGAGTTCTGGGCATTACAACAAGGAGTTAT
JMFN012P07+ GGCGTTGTGAACGGCGAGGTAATCTTGAGGTGAGTTCTGGGCATTACAACAAGGAGTTAT
rJMSF034B03- GGCGTTGTGAACGGCGAGGTAATCTTGAGGTGAGTTCTGGGCATTACAACAAGGAGTTAT
JMFF042H09+ GGCGTTGTGAACGGCGAGGTAATCTTGAGGTGAGTTCTGGGCATTACAACAAGGAGTTAT
JMSF034B03+ GGCGTTGTGAACGGCGAGGTAATCTTGAGGTGAGTTCTGGGCATTACAACAAGGAGTTAT
____________________________________________________________
consensus GGCGTTGTGAACGGCGAGGTAATCTTGAGGTGAGTTCTGGGCATTACAACAAGGAGTTAT
. : . : . : . : . : . :
JMFN029B20+ CACAACCACAAATATGCATATTATGCATGCAAACCAAAACGATGACACTTTTGAAACCAC
JMFN012P07+ CACAACCACAAATATGCATATTATGCATGCAAACCAAAACGATGACACTTTTGAAACCAC
rJMSF034B03- CACAACCACAAATATGCATATTATGCATGCAAACCAAAACGATGACACTTTTGAAACCAC
JMFF042H09+ CACAACCACAAATATGCATATTATGCATGCAAACCAAAACGATGACACTTTTGAAACCAC
JMSF034B03+ CACAACCACAAATATGCATATTATGCATGCAAACCAAAACGATGACACTTTTGAAACCAC
____________________________________________________________
consensus CACAACCACAAATATGCATATTATGCATGCAAACCAAAACGATGACACTTTTGAAACCAC
. : . : . : . : . : . :
JMFN029B20+ CATTTTTTATTTTTTTTTGGCTTC
JMFN012P07+ CATTTTTTATTTTTTTTTGGCTTC
rJMSF034B03- CATTTTTTATTTTTTTTTGGCTTC
JMFF042H09+ CATTTTTTATTTTTTTTTGGCTTCTCAATACCGGAAAAGATTGATGAATACAAAGT
JMSF034B03+ CATTTTTTATTTTTTTTTGGCTTCTCAATACCGGAAAAGATTGATGAATACAAAGTGTTC
____________________________________________________________
consensus CATTTTTTATTTTTTTTTGGCTTCTCAATACCGGAAAAGATTGATGAATACAAAGTGTTC