Contig 010785:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF024F20Sequence667010785 (4)ref|XP_009598786.1|5e-56PREDICTED: ubiquitin domain-containing protein 1-like [Nicotiana tomentosiformi652010785 (4)ref|XP_009598786.1|4e-56PREDICTED: ubiquitin domain-containing protein 1-like [Nicotiana tomentosiformi
JMSF033H14Sequence645010785 (4)ref|XP_009598786.1|3e-56PREDICTED: ubiquitin domain-containing protein 1-like [Nicotiana tomentosiformi602010785 (4)ref|XP_009598786.1|2e-56PREDICTED: ubiquitin domain-containing protein 1-like [Nicotiana tomentosiformi

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF033H14+ GATCAGCACGCAGAAATCCTTCCCAAGAAATTCATTCCCCACTCC
JMSF033H14- ATCAGCACGCAGAAATCCTTCCCAAGAAATTCATTCCCCACTCC
                      ____________________________________________________________
consensus GATCAGCACGCAGAAATCCTTCCCAAGAAATTCATTCCCCACTCC
 
. : . : . : . : . : . :
rJMSF033H14+ CCCAATTCCTTCTCTCTGCCTCTTTCGTAAATTATTTCCTGATTTTGCTAGTTAATCAAT
JMSF033H14- CCCAATTCCTTCTCTCTGCCTCTTTCGTAAATTATTTCCTGATTTTGCTAGTTAATCAAT
                      ____________________________________________________________
consensus CCCAATTCCTTCTCTCTGCCTCTTTCGTAAATTATTTCCTGATTTTGCTAGTTAATCAAT
 
. : . : . : . : . : . :
rJMSF033H14+ TCTCCGGGGAACTCCATACCATGGGCTGCGCCGAATCCTCGCGTTCCAAAGGAGATGACA
JMSF024F20- TCGCGTTCCAAAGGAGATGACA
rJMSF024F20+ TCGCGTTCCAAAGGAGATGACA
JMSF033H14- TCTCCGGGGAACTCCATACCATGGGCTGCGCCGAATCCTCGCGTTCCAAAGGAGATGACA
                      ____________________________________________________________
consensus TCTCCGGGGAACTCCATACCATGGGCTGCGCCGAATCCTCGCGTTCCAAAGGAGATGACA
 
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rJMSF033H14+ CTGTTAAGAAGATAAGAAAGCCAAAACCTTGGAAGCATTCAGAACCGATAACAAGGGATC
JMSF024F20- CTGTTAAGAAGATAAGAAAGCCAAAACCTTGGAAGCATTCAGAACCGATAACAAGGGATC
rJMSF024F20+ CTGTTAAGAAGATAAGAAAGCCAAAACCTTGGAAGCATTCAGAACCGATAACAAGGGATC
JMSF033H14- CTGTTAAGAAGATAAGAAAGCCAAAACCTTGGAAGCATTCAGAACCGATAACAAGGGATC
                      ____________________________________________________________
consensus CTGTTAAGAAGATAAGAAAGCCAAAACCTTGGAAGCATTCAGAACCGATAACAAGGGATC
 
. : . : . : . : . : . :
rJMSF033H14+ AACTAGTACAGATGCGTAACGAATTTTGGGACACTGCTCCACACTATGGTGGTCAAAAAG
JMSF024F20- AACTAGTACAGATGCGTAACGAATTTTGGGACACTGCTCCACACTATGGTGGTCAAAAAG
rJMSF024F20+ AACTAGTACAGATGCGTAACGAATTTTGGGACACTGCTCCACACTATGGTGGTCAAAAAG
JMSF033H14- AACTAGTACAGATGCGTAACGAATTTTGGGACACTGCTCCACACTATGGTGGTCAAAAAG
                      ____________________________________________________________
consensus AACTAGTACAGATGCGTAACGAATTTTGGGACACTGCTCCACACTATGGTGGTCAAAAAG
 
. : . : . : . : . : . :
rJMSF033H14+ AGATCTGGGATGCACTCTGTGCTGCAGCCGAGGCTGATTTAGCCCTCGCCCAAGCTATTG
JMSF024F20- AGATCTGGGATGCACTCTGTGCTGCAGCCGAGGCTGATTTAGCCCTCGCCCAAGCTATTG
rJMSF024F20+ AGATCTGGGATGCACTCTGTGCTGCAGCCGAGGCTGATTTAGCCCTCGCCCAAGCTATTG
JMSF033H14- AGATCTGGGATGCACTCTGTGCTGCAGCCGAGGCTGATTTAGCCCTCGCCCAAGCTATTG
                      ____________________________________________________________
consensus AGATCTGGGATGCACTCTGTGCTGCAGCCGAGGCTGATTTAGCCCTCGCCCAAGCTATTG
 
. : . : . : . : . : . :
rJMSF033H14+ TAGATGGCGCTGGTATTATTGTTCAAGCCCCCGATCTAACAGTCTGCTACGACGAGAGAG
JMSF024F20- TAGATGGCGCTGGTATTATTGTTCAAGCCCCCGATCTAACAGTCTGCTACGACGAGAGAG
rJMSF024F20+ TAGATGGCGCTGGTATTATTGTTCAAGCCCCCGATCTAACAGTCTGCTACGACGAGAGAG
JMSF033H14- TAGATGGCGCTGGTATTATTGTTCAAGCCCCCGATCTAACAGTCTGCTACGACGAGAGAG
                      ____________________________________________________________
consensus TAGATGGCGCTGGTATTATTGTTCAAGCCCCCGATCTAACAGTCTGCTACGACGAGAGAG
 
. : . : . : . : . : . :
rJMSF033H14+ GTGCCAAGTACGAGTTGCCAAAGTACGTTCTGAGTGAACCAACGAATTTGATTCGCGATG
JMSF024F20- GTGCCAAGTACGAGTTGCCAAGGTACGTTCTGAGTGAACCAACGAATTTGATTCGCGATG
rJMSF024F20+ GTGCCAAGTACGAGTTGCCAAGGTACGTTCTGAGTGAACCAACGAATTTGATTCGCGATG
JMSF033H14- GTGCCAAGTACGAGTTGCCAAAGTACGTTCTGAGTGAACCAACGAATTTGATTCGCGATG
                      ____________________________________________________________
consensus GTGCCAAGTACGAGTTGCCAAGGTACGTTCTGAGTGAACCAACGAATTTGATTCGCGATG
 
. : . : . : . : . : . :
rJMSF033H14+ GCTAAAGCAGTGGGACTGGGAAGACCATTGATGCTTCACTTGGAATGAAGATCTTGTAAA
JMSF024F20- GCTAAAGCAGTGGGACTGGGAAGACCATTGATGCTTCACTTGGAATGAAGATCTTGTAAA
rJMSF024F20+ GCTAAAGCAGTGGGACTGGGAAGACCATTGATGCTTCACTTGGAATGAAGATCTTGTAAA
JMSF033H14- GCTAAAGCAGTGGGACTGGGAAGACCATTGATGCTTCACTTGGAATGAAGATCTTGTAAA
                      ____________________________________________________________
consensus GCTAAAGCAGTGGGACTGGGAAGACCATTGATGCTTCACTTGGAATGAAGATCTTGTAAA
 
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rJMSF033H14+ TTGGTTTCATTTCATTTCCCCTTTTCAATTCATTTTGCTTTCTGGGCAGCATTCACCCAT
JMSF024F20- TTGGTTTCATTTCATTTCCCCTTTTCAATTCATTTTGCTTTCTGGGCAGCATTCACCCAT
rJMSF024F20+ TTGGTTTCATTTCATTTCCCCTTTTCAATTCATTTTGCTTTCTGGGCAGCATTCACCCAT
JMSF033H14- TTGGTTTCATTTCATTTCCCCTTTTCAATTCATTTTGCTTTCTGGGCAGCATTCACCCAT
                      ____________________________________________________________
consensus TTGGTTTCATTTCATTTCCCCTTTTCAATTCATTTTGCTTTCTGGGCAGCATTCACCCAT
 
. : . : . : . : . : . :
rJMSF033H14+ TAGTTGTTATGAAGAAA
JMSF024F20- TAGTTGTTATGAAGAAACTGGTGTTATCTGGAAA
rJMSF024F20+ TAGTTGTTATGAAGAAA
JMSF033H14- TAGTTGTTATGAAGAAACTGGTGTTATCTGGAAAATGGAAATGGTACTACTAGAGTAAAA
                      ____________________________________________________________
consensus TAGTTGTTATGAAGAAACTGGTGTTATCTGGAAAATGGAAATGGTACTACTAGAGTAAAA