Contig 010785:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF024F20Sequence667010785 (4)ref|XP_009598786.1|5e-56PREDICTED: ubiquitin domain-containing protein 1-like [Nicotiana tomentosiformi652010785 (4)ref|XP_009598786.1|4e-56PREDICTED: ubiquitin domain-containing protein 1-like [Nicotiana tomentosiformi
JMSF033H14Sequence645010785 (4)ref|XP_009598786.1|3e-56PREDICTED: ubiquitin domain-containing protein 1-like [Nicotiana tomentosiformi602010785 (4)ref|XP_009598786.1|2e-56PREDICTED: ubiquitin domain-containing protein 1-like [Nicotiana tomentosiformi

Alignment

This contig is upended


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rJMSF033H14+                         GATCAGCACGCAGAAATCCTTCCCAAGAAATTCATTCCCCACTCC
JMSF033H14-                           ATCAGCACGCAGAAATCCTTCCCAAGAAATTCATTCCCCACTCC
                      ____________________________________________________________
consensus                            GATCAGCACGCAGAAATCCTTCCCAAGAAATTCATTCCCCACTCC
 
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rJMSF033H14+          CCCAATTCCTTCTCTCTGCCTCTTTCGTAAATTATTTCCTGATTTTGCTAGTTAATCAAT
JMSF033H14-           CCCAATTCCTTCTCTCTGCCTCTTTCGTAAATTATTTCCTGATTTTGCTAGTTAATCAAT
                      ____________________________________________________________
consensus             CCCAATTCCTTCTCTCTGCCTCTTTCGTAAATTATTTCCTGATTTTGCTAGTTAATCAAT
 
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rJMSF033H14+          TCTCCGGGGAACTCCATACCATGGGCTGCGCCGAATCCTCGCGTTCCAAAGGAGATGACA
JMSF024F20-                                                 TCGCGTTCCAAAGGAGATGACA
rJMSF024F20+                                                TCGCGTTCCAAAGGAGATGACA
JMSF033H14-           TCTCCGGGGAACTCCATACCATGGGCTGCGCCGAATCCTCGCGTTCCAAAGGAGATGACA
                      ____________________________________________________________
consensus             TCTCCGGGGAACTCCATACCATGGGCTGCGCCGAATCCTCGCGTTCCAAAGGAGATGACA
 
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rJMSF033H14+          CTGTTAAGAAGATAAGAAAGCCAAAACCTTGGAAGCATTCAGAACCGATAACAAGGGATC
JMSF024F20-           CTGTTAAGAAGATAAGAAAGCCAAAACCTTGGAAGCATTCAGAACCGATAACAAGGGATC
rJMSF024F20+          CTGTTAAGAAGATAAGAAAGCCAAAACCTTGGAAGCATTCAGAACCGATAACAAGGGATC
JMSF033H14-           CTGTTAAGAAGATAAGAAAGCCAAAACCTTGGAAGCATTCAGAACCGATAACAAGGGATC
                      ____________________________________________________________
consensus             CTGTTAAGAAGATAAGAAAGCCAAAACCTTGGAAGCATTCAGAACCGATAACAAGGGATC
 
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rJMSF033H14+          AACTAGTACAGATGCGTAACGAATTTTGGGACACTGCTCCACACTATGGTGGTCAAAAAG
JMSF024F20-           AACTAGTACAGATGCGTAACGAATTTTGGGACACTGCTCCACACTATGGTGGTCAAAAAG
rJMSF024F20+          AACTAGTACAGATGCGTAACGAATTTTGGGACACTGCTCCACACTATGGTGGTCAAAAAG
JMSF033H14-           AACTAGTACAGATGCGTAACGAATTTTGGGACACTGCTCCACACTATGGTGGTCAAAAAG
                      ____________________________________________________________
consensus             AACTAGTACAGATGCGTAACGAATTTTGGGACACTGCTCCACACTATGGTGGTCAAAAAG
 
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rJMSF033H14+          AGATCTGGGATGCACTCTGTGCTGCAGCCGAGGCTGATTTAGCCCTCGCCCAAGCTATTG
JMSF024F20-           AGATCTGGGATGCACTCTGTGCTGCAGCCGAGGCTGATTTAGCCCTCGCCCAAGCTATTG
rJMSF024F20+          AGATCTGGGATGCACTCTGTGCTGCAGCCGAGGCTGATTTAGCCCTCGCCCAAGCTATTG
JMSF033H14-           AGATCTGGGATGCACTCTGTGCTGCAGCCGAGGCTGATTTAGCCCTCGCCCAAGCTATTG
                      ____________________________________________________________
consensus             AGATCTGGGATGCACTCTGTGCTGCAGCCGAGGCTGATTTAGCCCTCGCCCAAGCTATTG
 
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rJMSF033H14+          TAGATGGCGCTGGTATTATTGTTCAAGCCCCCGATCTAACAGTCTGCTACGACGAGAGAG
JMSF024F20-           TAGATGGCGCTGGTATTATTGTTCAAGCCCCCGATCTAACAGTCTGCTACGACGAGAGAG
rJMSF024F20+          TAGATGGCGCTGGTATTATTGTTCAAGCCCCCGATCTAACAGTCTGCTACGACGAGAGAG
JMSF033H14-           TAGATGGCGCTGGTATTATTGTTCAAGCCCCCGATCTAACAGTCTGCTACGACGAGAGAG
                      ____________________________________________________________
consensus             TAGATGGCGCTGGTATTATTGTTCAAGCCCCCGATCTAACAGTCTGCTACGACGAGAGAG
 
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rJMSF033H14+          GTGCCAAGTACGAGTTGCCAAAGTACGTTCTGAGTGAACCAACGAATTTGATTCGCGATG
JMSF024F20-           GTGCCAAGTACGAGTTGCCAAGGTACGTTCTGAGTGAACCAACGAATTTGATTCGCGATG
rJMSF024F20+          GTGCCAAGTACGAGTTGCCAAGGTACGTTCTGAGTGAACCAACGAATTTGATTCGCGATG
JMSF033H14-           GTGCCAAGTACGAGTTGCCAAAGTACGTTCTGAGTGAACCAACGAATTTGATTCGCGATG
                      ____________________________________________________________
consensus             GTGCCAAGTACGAGTTGCCAAGGTACGTTCTGAGTGAACCAACGAATTTGATTCGCGATG
 
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rJMSF033H14+          GCTAAAGCAGTGGGACTGGGAAGACCATTGATGCTTCACTTGGAATGAAGATCTTGTAAA
JMSF024F20-           GCTAAAGCAGTGGGACTGGGAAGACCATTGATGCTTCACTTGGAATGAAGATCTTGTAAA
rJMSF024F20+          GCTAAAGCAGTGGGACTGGGAAGACCATTGATGCTTCACTTGGAATGAAGATCTTGTAAA
JMSF033H14-           GCTAAAGCAGTGGGACTGGGAAGACCATTGATGCTTCACTTGGAATGAAGATCTTGTAAA
                      ____________________________________________________________
consensus             GCTAAAGCAGTGGGACTGGGAAGACCATTGATGCTTCACTTGGAATGAAGATCTTGTAAA
 
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rJMSF033H14+          TTGGTTTCATTTCATTTCCCCTTTTCAATTCATTTTGCTTTCTGGGCAGCATTCACCCAT
JMSF024F20-           TTGGTTTCATTTCATTTCCCCTTTTCAATTCATTTTGCTTTCTGGGCAGCATTCACCCAT
rJMSF024F20+          TTGGTTTCATTTCATTTCCCCTTTTCAATTCATTTTGCTTTCTGGGCAGCATTCACCCAT
JMSF033H14-           TTGGTTTCATTTCATTTCCCCTTTTCAATTCATTTTGCTTTCTGGGCAGCATTCACCCAT
                      ____________________________________________________________
consensus             TTGGTTTCATTTCATTTCCCCTTTTCAATTCATTTTGCTTTCTGGGCAGCATTCACCCAT
 
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rJMSF033H14+          TAGTTGTTATGAAGAAA                                           
JMSF024F20-           TAGTTGTTATGAAGAAACTGGTGTTATCTGGAAA                          
rJMSF024F20+          TAGTTGTTATGAAGAAA                                           
JMSF033H14-           TAGTTGTTATGAAGAAACTGGTGTTATCTGGAAAATGGAAATGGTACTACTAGAGTAAAA
                      ____________________________________________________________
consensus             TAGTTGTTATGAAGAAACTGGTGTTATCTGGAAAATGGAAATGGTACTACTAGAGTAAAA