Contig 010757:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF004O03Sequence300010757 (4)ref|XP_011077551.1|108PREDICTED: PHD finger protein ALFIN-LIKE 1-like [Sesamum indicum] ref|XP_0110775289011345 (2)
JMSF030C08Sequence713010757 (4)gb|KGN50659.1|3e-27hypothetical protein Csa_5G204410 [Cucumis sativus]771011345 (2)ref|XP_010264625.1|259PREDICTED: PHD finger protein ALFIN-LIKE 1-like [Nelumbo nucifera]
JMSF048M13Sequence651010757 (4)ref|XP_011095017.1|321PREDICTED: PHD finger protein ALFIN-LIKE 1-like [Sesamum indicum]710010757 (4)ref|XP_010264625.1|265PREDICTED: PHD finger protein ALFIN-LIKE 1-like [Nelumbo nucifera]

Alignment

This contig is upended


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rJMSF048M13- AAAGCATCTCTA
                      ____________________________________________________________
consensus AAAGCATCTCTA
 
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rJMSF048M13- CAACAATGAAAAAACCCTATAAATTGTTCTATGGTTCTGATTTTCAACATGGATGCATCA
                      ____________________________________________________________
consensus CAACAATGAAAAAACCCTATAAATTGTTCTATGGTTCTGATTTTCAACATGGATGCATCA
 
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rJMSF048M13- CAACAACAGATCCATTACAAAGGTAATATCATATTGGCTATACTATTATGTCAGCATCGA
                      ____________________________________________________________
consensus CAACAACAGATCCATTACAAAGGTAATATCATATTGGCTATACTATTATGTCAGCATCGA
 
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rJMSF048M13- AAGCAACACAATTGATTGTTGGCCTCTGGTTTCTCGATCTCTACGGTCTGCCCCGCTTCA
JMSF048M13+ TCTGCCCCGCTTCA
                      ____________________________________________________________
consensus AAGCAACACAATTGATTGTTGGCCTCTGGTTTCTCGATCTCTACGGTCTGCCCCGCTTCA
 
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rJMSF048M13- AGCTGCAAGATGGACACTTGTACTGCTTTATGTTCTCGGCTTTAGCAGGCGTTATCTTCA
JMSF048M13+ AGCTGCAAGATGGACACTTGTACTGCTTTATGTTCTCGGCTTTAGCAGGCGTTATCTTCA
                      ____________________________________________________________
consensus AGCTGCAAGATGGACACTTGTACTGCTTTATGTTCTCGGCTTTAGCAGGCGTTATCTTCA
 
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rJMSF048M13- CACACTTCCCGTGAAACCACCTCTCGCAGATGTCACAGCCAATCCAGAACTCATCGGCAT
JMSF048M13+ CACACTTCCCGTGAAACCACCTCTCGCAGATGTCACAGCCAATCCAGAACTCATCGGCAT
                      ____________________________________________________________
consensus CACACTTCCCGTGAAACCACCTCTCGCAGATGTCACAGCCAATCCAGAACTCATCGGCAT
 
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rJMSF048M13- TGTAGTTTCCTCCACAGCTGCCGCACAGTGTTTCACCATGCTCTTCTTCATCTTCTTCAT
JMSF048M13+ TGTAGTTTCCTCCACAGCTGCCGCACAGTGTTTCACCATGCTCTTCTTCATCTTCTTCAT
                      ____________________________________________________________
consensus TGTAGTTTCCTCCACAGCTGCCGCACAGTGTTTCACCATGCTCTTCTTCATCTTCTTCAT
 
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rJMSF048M13- AACTTTCATCAGCTAGCTTTGGGGCGCTTTTCACCTGACCATCACTGGTTCTCTTTGTAC
JMSF048M13+ AACTTTCATCAGCTAGCTTTGGGGCGCTTTTCACCTGACCATCACTGGTTCTCTTTGTAC
                      ____________________________________________________________
consensus AACTTTCATCAGCTAGCTTTGGGGCGCTTTTCACCTGACCATCACTGGTTCTCTTTGTAC
 
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rJMSF048M13- TGCCCCGTGATCTGCTCCCACTATCTGCACTGGGCTTGTCTTTCACGGGCTTCCTTTCTG
JMSF048M13+ TGCCCCGTGATCTGCTCCCACTATCTGCACTGGGCTTGTCTTTCACGGGCTTCCTTTCTG
                      ____________________________________________________________
consensus TGCCCCGTGATCTGCTCCCACTATCTGCACTGGGCTTGTCTTTCACGGGCTTCCTTTCTG
 
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rJMSF048M13- TCACAACTTCAAAGACAGTGGGAAGATCGTTTATTAAGCTAAAAAGACGCTTCCTTTCAT
JMSF048M13+ TCACAACTTCAAAGACAGTGGGAAGATCGTTTATTAAGCTAAAAAGACGCTTCCTTTCAT
                      ____________________________________________________________
consensus TCACAACTTCAAAGACAGTGGGAAGATCGTTTATTAAGCTAAAAAGACGCTTCCTTTCAT
 
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rJMSF048M13- TCCGGTTGATCTGTGCTCCAAAGTAGAACGCCACAGATAGCAACCAACAATCACTATGCA
JMSF048M13+ TCCGGTTGATCTGTGCTCCAAAGTAGAACGCCACAGATAGCAACCAACAATCACTATGCA
JMSF030C08+ GCTCCAAAGTAGAATGCCACAGATAGCAACCAACAATCACTGTGGA
                      ____________________________________________________________
consensus TCCGGTTGATCTGTGCTCCAAAGTAGAACGCCACAGATAGCAACCAACAATCACTATGCA
 
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rJMSF048M13- CAGCAACTAGTGAAAGCCAATCTCTACGGTTCATACCATCCCTTGCAAAATTTATCCCAA
JMSF048M13+ CAGCAACTAGTGAAAGCCAATCTCTACGGTTCATACCATCCCTTGCAAAATTTATCCCAA
JMSF030C08+ TAGCANCAAGTGAAAGCCAATCTCTGCGGTTCATACCATCTCTGGCAAAGTTTATCCCAA
                      ____________________________________________________________
consensus CAGCAACTAGTGAAAGCCAATCTCTACGGTTCATACCATCCCTTGCAAAATTTATCCCAA
 
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rJMSF048M13- GGGCAGGCTCTGGAAGCTCAGGAGGGACTTCCTC
JMSF048M13+ GGGCAGGCTCTGGAAGCTCAGGAGGGACTTCCTCAGCAGGAAGATTGACTTCCCAGGTTT
JMSF030C08+ GAACAGGCTCTGGAAGCTCCGGTGGAACTTCCTCTGCCGGAATGTTCACTTCCCAGGTTT
                      ____________________________________________________________
consensus GGGCAGGCTCTGGAAGCTCAGGAGGGACTTCCTCTGCCGGAATGTTGACTTCCCAGGTTT
 
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JMSF048M13+ CATTTGCATGTCCATATAGGCACAAATTCTCCTTCTCT
JMSF030C08+ CATTTTGATGTCCGTATAAGCACAAATTCTCCTTCTCTATAACACATCATTATATAACAA
                      ____________________________________________________________
consensus CATTTTGATGTCCGTATAGGCACAAATTCTCCTTCTCTATAACACATCATTATATAACAA
 
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JMSF030C08+ ATGCACAAAAGCATCTAAAACTGCCATTACCCATAAACTACACAGATCAGAGATTACTAG
                      ____________________________________________________________
consensus ATGCACAAAAGCATCTAAAACTGCCATTACCCATAAACTACACAGATCAGAGATTACTAG
 
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JMSF030C08+ ATTAGCTTAGCAGAAACAAAGCTCTATAACAATGCAACACAAATAACAGAATTACAAATA
                      ____________________________________________________________
consensus ATTAGCTTAGCAGAAACAAAGCTCTATAACAATGCAACACAAATAACAGAATTACAAATA
 
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JMSF030C08+ ATGATCGATATATACTTCATCAAATTTCAGCTGGAAATTAAATTCAACAATTCTATCCTG
                      ____________________________________________________________
consensus ATGATCGATATATACTTCATCAAATTTCAGCTGGAAATTAAATTCAACAATTCTATCCTG
 
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JMSF030C08+ ATTAGCTAGCTTTACAACCTAATTTAAGATGATTTAATTTTGAAAAGCAGTAAAGAAACG
                      ____________________________________________________________
consensus ATTAGCTAGCTTTACAACCTAATTTAAGATGATTTAATTTTGAAAAGCAGTAAAGAAACG
 
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JMSF004O03+ CTGGATCGCACAGACCGTAGAACTCATCCACATCGTAG
JMSF030C08+ GTGAATTCGAATTAAAATGTACCTGGATCGCACAGACCGTAGAACTCATCCACATCGTAG
                      ____________________________________________________________
consensus GTGAATTCGAATTAAAATGTACCTGGATCGCACAGACCGTAGAACTCATCCACATCGTAG
 
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JMSF004O03+ GTTAAGGCCCGGAGAATCCCGGAGCGACGGGCGCTGAAATCCTTGAAGATCTCCTCAACG
JMSF030C08+ GTTAAGGCCCGGAGAATCCCGGAGCGACGGGCGCTGAAATCCTTGAAGATCTCCTCAACG
                      ____________________________________________________________
consensus GTTAAGGCCCGGAGAATCCCGGAGCGACGGGCGCTGAAATCCTTGAAGATCTCCTCAACG
 
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JMSF004O03+ GTTCGACCCATTT
JMSF030C08+ GTTCGACCCATTTACAGAAGAAATGAATTGAATGAATTGCTTAAAGTCCGTATAATTCGA
                      ____________________________________________________________
consensus GTTCGACCCATTTACAGAAGAAATGAATTGAATGAATTGCTTAAAGTCCGTATAATTCGA
 
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JMSF030C08+ ATGGGTGATCTGAGAGACACTCGATCCCAGTATACGTGTGGTGCATGAAATAGAAAGACC
                      ____________________________________________________________
consensus ATGGGTGATCTGAGAGACACTCGATCCCAGTATACGTGTGGTGCATGAAATAGAAAGACC