| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFS138E10 | Sequence | 634 | 010752 (5) | ref|XP_009772309.1| | 3e-61 | PREDICTED: glutamate receptor 3.6-like, partial [Nicotiana sylvestris] | |||||
| JMSF013P22 | Sequence | 322 | 010752 (5) | 697 | 005644 (4) | ref|XP_010316485.1| | 6e-91 | PREDICTED: glutamate receptor 3.6 isoform X3 [Solanum lycopersicum] | |||
| JMSF029N09 | Sequence | 414 | 010752 (5) | ref|XP_009772309.1| | 3e-07 | PREDICTED: glutamate receptor 3.6-like, partial [Nicotiana sylvestris] | 715 | 005644 (4) | ref|XP_009796243.1| | 2e-96 | PREDICTED: LOW QUALITY PROTEIN: glutamate receptor 3.3-like, partial [Nicotiana |
| JMSF032G09 | Sequence | 664 | 010752 (5) | ref|XP_009772309.1| | 1e-75 | PREDICTED: glutamate receptor 3.6-like, partial [Nicotiana sylvestris] | 744 | 005644 (4) | ref|XP_009796243.1| | 6e-98 | PREDICTED: LOW QUALITY PROTEIN: glutamate receptor 3.3-like, partial [Nicotiana |
| JMSF046F11 | Sequence | 199 | 010752 (5) | 176 | 005644 (4) | ||||||
This contig is upended
. : . : . : . : . : . :
JMSF032G09+ ATGGCAACCACTTCCCTCCACTNGTAGTAGTCCACGATCGACGC
____________________________________________________________
consensus ATGGCAACCACTTCCCTCCACTNGTAGTAGTCCACGATCGACGC
. : . : . : . : . : . :
JMSF032G09+ CACTGCAGCCATNTGAAACAAATCGTTCGGGGAGGTCCTAACGAAGAACGGATACTGAAG
JMFS138E10+ AGGTCCTAACGAAGAACGGATACTGAAG
____________________________________________________________
consensus CACTGCAGCCATNTGAAACAAATCGTTCGGGGAGGTCCTAACGAAGAACGGATACTGAAG
. : . : . : . : . : . :
JMSF032G09+ AGACGAAAGCGTTGGATCAGTCGCAGCAAAAGACAACAAAGGGACTTGTAGCTCGTTTGC
JMFS138E10+ AGACGAAAGCGTTGGATCAGTCGCAGCAAAAGACAACAAAGGGACTTGTAGCTCGTTTGC
____________________________________________________________
consensus AGACGAAAGCGTTGGATCAGTCGCAGCAAAAGACAACAAAGGGACTTGTAGCTCGTTTGC
. : . : . : . : . : . :
JMSF032G09+ AAGGTGGGAAATCACGTGAGCTATGACTGAAGCTTGGGGACCGATTATAGCCACCGTGTC
JMFS138E10+ AAGGTGGGAAATCACGTGAGCTATGACTGAAGCTTGGGGACCGATTATAGCCACCGTGTC
____________________________________________________________
consensus AAGGTGGGAAATCACGTGAGCTATGACTGAAGCTTGGGGACCGATTATAGCCACCGTGTC
. : . : . : . : . : . :
JMSF032G09+ GGTCTCCATGAACCGCATAGCTTCAACAATGCCGAGAAATCCACTAGAATTGCTGTCGAG
JMFS138E10+ GGTCTCCATGAACCGCATAGCTTCAACAATGCCGAGAAATCCACTAGAATTGCTGTCGAG
____________________________________________________________
consensus GGTCTCCATGAACCGCATAGCTTCAACAATGCCGAGAAATCCACTAGAATTGCTGTCGAG
. : . : . : . : . : . :
JMSF032G09+ CATCGTGACATTCAACTTGGTTCCTCCAAGAACATCTGGATTGGAGTTCACATCATCCAC
JMFS138E10+ CATCGTGACATTCAACTTGGTTCCCCCAAGAACATCTGGATTGGAGTTCACATCATCCAC
____________________________________________________________
consensus CATCGTGACATTCAACTTGGTTCCTCCAAGAACATCTGGATTGGAGTTCACATCATCCAC
. : . : . : . : . : . :
JMSF032G09+ TGCAGCTTCCACAGCAGCTTTCGCAACTTTGCCAATTGGCGAAATAAAAGTCAGTATACA
JMFS138E10+ TGCAGCTTCCACAGCAGCTTTCGCAACTTTGCCAATTGGCGAAATAAAAGTCAGTATACA
JMSF029N09+ CTTCNACAGCAGCTTTNGCAANTTNGCCAATNGGNGAAATAAAAGTCAGTATACA
____________________________________________________________
consensus TGCAGCTTCCACAGCAGCTTTCGCAACTTTGCCAATTGGCGAAATAAAAGTCAGTATACA
. : . : . : . : . : . :
JMSF032G09+ CCCAATATTCACCACATCAGGCCTGGTAGAAAGGGTTGAATTAACCCCTTCACAAACATA
JMFS138E10+ CCCAATATTCACCACATCAGGCCTGGTAGAAAGGGTTGAATTAACCCCTTCACAAACATA
JMSF013P22+ TGGTAGAAAGGGTTGAATTAACCCCTTCACAAACATA
JMSF029N09+ CCCAATATTCACCACATCAGGCGTGGTAGAAAGGGTTGAATTAACCCCTTCACAAACATA
____________________________________________________________
consensus CCCAATATTCACCACATCAGGCCTGGTAGAAAGGGTTGAATTAACCCCTTCACAAACATA
. : . : . : . : . : . :
JMSF032G09+ CCCACTGTAAAAAGTTAAAAACATCACCA-CCCAAAACCCCTTCATCTTCAATTCAATCA
JMSF046F11+ CTGTAAAAAGTTAAAAACATCNCCA-CCCAAAACCCCTTCATCTTCAATTCAATCA
JMFS138E10+ CCCACTGTAAAAAGTTAAAAACATCACCA-CCCAAAACCCCTTCATCTTCAATTCAATCA
JMSF013P22+ CCCACTGTAAAAAGTTAAAAACATCACCA-CCCAAAACCCCTTCATCTTCAATTCAATCA
JMSF029N09+ CCCACTGTAAAAAGTTAAAAACATCACCACCCCAAAACCCCTTCATCTTCAATTCAATCA
____________________________________________________________
consensus CCCACTGTAAAAAGTTAAAAACATCACCA-CCCAAAACCCCTTCATCTTCAATTCAATCA
. : . : . : . : . : . :
JMSF032G09+ CCAAACCCCCAGATTTCACCCTGAAAGCAAGCTTTCATTTAATGAA-CAGTGGAAGTGGT
JMSF046F11+ CCAAACCCCCAGATTTCACCTTGAAAGCAAGCTTTCANTTAATGAAGCAGTGGAAGTGGT
JMFS138E10+ CCAAACCCCCAGATTTCACCCTGAAAGCAAGCTTTCATTTAATGAA-CAGTGGAAGTGGT
JMSF013P22+ CCAAACCCCCAGATTTCACCCTGAAAGCAAGCTTTCATTTAATGAA-CAGTGGAAGTGGT
JMSF029N09+ CCAAACCCCCAGATTTCACCCTGAAAGCAAGCTTTCATTTAATGAA-CAGTGGAAGTGGT
____________________________________________________________
consensus CCAAACCCCCAGATTTCACCCTGAAAGCAAGCTTTCATTTAATGAA-CAGTGGAAGTGGT
. : . : . : . : . : . :
JMSF032G09+ AAACGTCCTCCATATTTCCTTCTCGTCTTTTTCTGCCCTTCAGTCTTTCTTGGAAATCCA
JMSF046F11+ AAACGTCCTCCATATTTCCTTNTCGTCTTTTTCTGCCNTTCAGTCTTTCTNGGAAATNCA
JMFS138E10+ AAACGTCCTCCATATTTCCTTCTCGTCTTTTTCTGCCCTTCAGTCTTTCTTGGAAATCCA
JMSF013P22+ AAACGTCCTCCATATTTCCTTCTCGTCTTTTTCTGCCCTTCAGTCTTTCTTGGAAATCCA
JMSF029N09+ AAACGTCCTCCATATTTCCTTCTCGTCTTTTTCTGCCCTTCAGTCTTTCTTGGAAATCCA
____________________________________________________________
consensus AAACGTCCTCCATATTTCCTTCTCGTCTTTTTCTGCCCTTCAGTCTTTCTTGGAAATCCA
. : . : . : . : . : . :
JMSF032G09+ CTAGATTCATGTATGGCTCAT
JMSF046F11+ CTAGATTCATGNATGGCTCATAT
JMFS138E10+ CTAGATTCATGTATGGCTCATATAGATTGGATTTGGATATACATACATATATATAGCTTG
JMSF013P22+ CTAGATTCATGTATGGCTCATATAGATTGGATTTGGATATACATACATATATATAGCTTG
JMSF029N09+ CTAGATTCATGTATGGCTCATATAGATTGGATTTGGATATACATACATATATATAGCTTG
____________________________________________________________
consensus CTAGATTCATGTATGGCTCATATAGATTGGATTTGGATATACATACATATATATAGCTTG
. : . : . : . : . : . :
JMFS138E10+ GAACTTGT
JMSF013P22+ GAACTTGTAAGAGAAGGTATGATACACAAAACTTTTAACAACTC
JMSF029N09+ GAACTTGTAAGAGAAGGTATGATACACAAAACTTTTAACAACTCTGGTAAACATTCCTCC
____________________________________________________________
consensus GAACTTGTAAGAGAAGGTATGATACACAAAACTTTTAACAACTCTGGTAAACATTCCTCC