Contig 010741:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF027N22Sequence547010741 (2)ref|XP_009623760.1|7e-05PREDICTED: putative mediator of RNA polymerase II transcription subunit 24 [Nic701002880 (2)gb|EYU18731.1|3e-77hypothetical protein MIMGU_mgv1a005173mg [Erythranthe guttata]
JMSF038I09Sequence653010741 (2)emb|CDP14115.1|5e-35unnamed protein product [Coffea canephora]885002880 (2)ref|XP_009799720.1|293PREDICTED: uncharacterized protein LOC104245758 [Nicotiana sylvestris]

Alignment

This contig is upended


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JMSF038I09+                                              TCCACAACCGCCCTGTCGAAAGCGG
                      ____________________________________________________________
consensus                                                TCCACAACCGCCCTGTCGAAAGCGG
 
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JMSF038I09+           CCGACTTCGCCGGAAAAACGAGCAAAAGATCCGATTTTGAACTCAGCCCGGACCGGAACA
                      ____________________________________________________________
consensus             CCGACTTCGCCGGAAAAACGAGCAAAAGATCCGATTTTGAACTCAGCCCGGACCGGAACA
 
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JMSF038I09+           AAAGCCGCAAGAACAGCTTCAGTTCATGCACAGTGAGTGACTCAACTGCATGAGCTACAA
                      ____________________________________________________________
consensus             AAAGCCGCAAGAACAGCTTCAGTTCATGCACAGTGAGTGACTCAACTGCATGAGCTACAA
 
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JMSF038I09+           CAAGGTCGTTCATCGCCCTGGTTCCTCTCCGGTACAGAGTGCCCATTCCCTGCAATGCGT
JMSF027N22+                                                                AATGCGT
                      ____________________________________________________________
consensus             CAAGGTCGTTCATCGCCCTGGTTCCTCTCCGGTACAGAGTGCCCATTCCCTGCAATGCGT
 
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JMSF038I09+           GCTGGAAAGCCAAATTTTTCCATAAATCCTCGCCGGAGTTGTGCTTCGGCCAGAAAGACT
JMSF027N22+           GCTGGAAAGCCAAATTTTTCCATAAATCCTCGCCGGAGNTGTGCTTCGGCCAGAAAGACT
                      ____________________________________________________________
consensus             GCTGGAAAGCCAAATTTTTCCATAAATCCTCGCCGGAGTTGTGCTTCGGCCAGAAAGACT
 
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JMSF038I09+           TTCTGGACTTTTGCGGCAATGCAGTGGAAGAAGAAGAAGAAGCAGAGAGTTGCCTTCTGG
JMSF027N22+           TTCTGGACTTTTGCGGCAATGCAGTGGAAGAAGAAGAAGAAGCAGAGAGTTGCCTTCTGG
                      ____________________________________________________________
consensus             TTCTGGACTTTTGCGGCAATGCAGTGGAAGAAGAAGAAGAAGCAGAGAGTTGCCTTCTGG
 
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JMSF038I09+           GGTGGAAGTGGGAAGAAGCGGCGGTGGGTTCGAAGGTGGAAAGAGTAAAGAGGAGGAGAG
JMSF027N22+           GGTGGAAGTGGGAAGAAGCGGCGGTGGGTTCGAAGGTGGAAAGAGTAAAGAGGAGGAGAG
                      ____________________________________________________________
consensus             GGTGGAAGTGGGAAGAAGCGGCGGTGGGTTCGAAGGTGGAAAGAGTAAAGAGGAGGAGAG
 
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JMSF038I09+           TGACGAAGATGAGAAGGGCGCAGATTGAAATGGTGGATTGGGCGGTGGAGAGGAGGTGGG
JMSF027N22+           TGACGAAGATGAGAAGGGCGCAGATTGAAATGGTGGATTGGGCGGTGGAGAGGAGGTGGG
                      ____________________________________________________________
consensus             TGACGAAGATGAGAAGGGCGCAGATTGAAATGGTGGATTGGGCGGTGGAGAGGAGGTGGG
 
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JMSF038I09+           TGGAATTGGAGCGACGGAGCAGAGCATTAACGGCTCTCTTCCTCATAATGGGCGCGCCGC
JMSF027N22+           TGGAATTGGAGCGACGGAGCAGAGCANTAACGGCTCTCTTCCTCATAATGGGCGCGCCGC
                      ____________________________________________________________
consensus             TGGAATTGGAGCGACGGAGCAGAGCATTAACGGCTCTCTTCCTCATAATGGGCGCGCCGC
 
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JMSF038I09+           CGCCGCCGGGACTAGTAGCGGCGGCGGCGGTTTCATCTTCCGGGAAGAAAACAAATAGGA
JMSF027N22+           CGCCGCCGGGACTAGTAGCGGCGGCGGCGGTTTCATCTTCCGGGAAGAAAACAAATAGGA
                      ____________________________________________________________
consensus             CGCCGCCGGGACTAGTAGCGGCGGCGGCGGTTTCATCTTCCGGGAAGAAAACAAATAGGA
 
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JMSF038I09+           ATCCCATTCCCCCCCTGCC-TTGCTACCTTCACTACTACTAGTGCTGCTGCTATTCATCT
JMSF027N22+           ATCCCATTCCCCCCCNGCCTTTACTACCTTCACTANTACTAGTGCNGCTGCTATTCATCT
                      ____________________________________________________________
consensus             ATCCCATTCCCCCCCTGCCTTTGCTACCTTCACTACTACTAGTGCTGCTGCTATTCATCT
 
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JMSF038I09+           TCACAGAATCACAGATCACTTTTCCCTC                                
JMSF027N22+           TCACAGAATCACAGATCACTTTTCCCTCTCTCTCTCTCTCTCCAGCTAGCTTTACATATA
                      ____________________________________________________________
consensus             TCACAGAATCACAGATCACTTTTCCCTCTCTCTCTCTCTCTCCAGCTAGCTTTACATATA
 
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JMSF027N22+           TAAATGACTCTCTCTCTCTCTCTCTCTTCTCTCTCTCTCTCTCTCTTGATTATGTAGTCC
                      ____________________________________________________________
consensus             TAAATGACTCTCTCTCTCTCTCTCTCTTCTCTCTCTCTCTCTCTCTTGATTATGTAGTCC