Contig 010738:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS137F10Sequence622010738 (3)ref|XP_009617235.1|1e-54PREDICTED: pentatricopeptide repeat-containing protein At1g10910, chloroplastic
JMSF005P15Sequence204010738 (3)355007137 (5)ref|XP_009381175.1|2e-21PREDICTED: transmembrane 9 superfamily member 4-like [Musa acuminata subsp. mal
JMSF027J10Sequence679010738 (3)ref|XP_009617235.1|2e-64PREDICTED: pentatricopeptide repeat-containing protein At1g10910, chloroplastic748021480ref|XP_002299667.2|1e-22hypothetical protein POPTR_0001s21880g [Populus trichocarpa] gb|EEE84472.2| hypo

Alignment

This contig is upended


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JMSF027J10+                                                    GCAAGAAGCGTAGTATATG
                      ____________________________________________________________
consensus                                                      GCAAGAAGCGTAGTATATG
 
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JMFS137F10+                                     TGCTTCATTTGAGTAAACAGATTGAAACTACTCT
JMSF027J10+           TTACAACATCTGGTACTAAACCCTCCTGCTTCATTTGAGTAAACAGATTGAAACTACTCT
                      ____________________________________________________________
consensus             TTACAACATCTGGTACTAAACCCTCCTGCTTCATTTGAGTAAACAGATTGAAACTACTCT
 
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JMFS137F10+           TTGGTTTGCCATTTTTTATCAGACAACCAAGAATAGAGTTGCAAACCGAGACATTATTCC
JMSF027J10+           TTGGTTTGCCATTTTTTATCAGACAACCAAGAATAGAGTTGCAAACCGAGACATTATTCC
                      ____________________________________________________________
consensus             TTGGTTTGCCATTTTTTATCAGACAACCAAGAATAGAGTTGCAAACCGAGACATTATTCC
 
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JMFS137F10+           TTGTTTCCTTATCTTTAATACTTTTGTAAATTTCTAGTGCCTCAATATAGCTTAGGCTAT
JMSF027J10+           TTGTTTCCTTATCTTTAATACTTTTGTAAATTTCTAGTGCCTCAATATAGCTTAGGCTAT
                      ____________________________________________________________
consensus             TTGTTTCCTTATCTTTAATACTTTTGTAAATTTCTAGTGCCTCAATATAGCTTAGGCTAT
 
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JMFS137F10+           TCCCCATGAATTTTACGTAGCCACTGTAAGAGGCAACATTAGTCCTCCTGTTCTGCTGCA
JMSF027J10+           TCCCCATGAATTTTACGTAGCCACTGTAAGAGGCAACATTAGTCCTCCTGTTCTGCTGCA
                      ____________________________________________________________
consensus             TCCCCATGAATTTTACGTAGCCACTGTAAGAGGCAACATTAGTCCTCCTGTTCTGCTGCA
 
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JMFS137F10+           TCCATTTGAAAACCTGAGATAACTCCTGCTTTCGATTTAGCTTCCCAAAATGGCGCAAAA
JMSF027J10+           TCCATTTGAAAACCTGAGATAACTCCTGCTTTCGATTTAGCTTCCCAAAATGGCGCAAAA
                      ____________________________________________________________
consensus             TCCATTTGAAAACCTGAGATAACTCCTGCTTTCGATTTAGCTTCCCAAAATGGCGCAAAA
 
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JMFS137F10+           CCACATTGATATCCGAAGCTTTCAATATCTCTCCATACCTTGAAAGAGCAGAGCTCAGGT
JMSF027J10+           CCACATTGATATCCGAAGCTTTCAATATCTCTCCATACCTTGAAAGAGCAGAGCTCAGGT
                      ____________________________________________________________
consensus             CCACATTGATATCCGAAGCTTTCAATATCTCTCCATACCTTGAAAGAGCAGAGCTCAGGT
 
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JMFS137F10+           CAGATGATCCTTGAATTTCAATAATTGCAGATCTTTTTGCACTCGGAGAAGCGGAGAGGC
JMSF027J10+           CAGATGATCCTTGAATTTCAATAATTGCAGATCTTTTTGCACTCGGAGAAGCGGAGAGGC
                      ____________________________________________________________
consensus             CAGATGATCCTTGAATTTCAATAATTGCAGATCTTTTTGCACTCGGAGAAGCGGAGAGGC
 
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JMFS137F10+           GATTTGCGGAATCTCTCGAGACGTTCTTCGGCCCATTTTGAAGGTCAATTCGCTTTGGCG
JMSF005P15+                                               TTTGAAGGTCAATTCGCTTTGGCG
JMSF027J10+           GATTTGCGGAATCTCTCGAGACGTTCTTCGGCCCATTTTGAAGGTCAATTCGCTTTGGCG
                      ____________________________________________________________
consensus             GATTTGCGGAATCTCTCGAGACGTTCTTCGGCCCATTTTGAAGGTCAATTCGCTTTGGCG
 
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JMFS137F10+           TGGGAGTGACAGAGGAAGTGATTGTTGAGGAGGTGCGTGCAGCTGCGAGTTTAGGCCTGC
JMSF005P15+           TGGGAGTGACAGAGGAAGTGATTGTTGAGGAGGTGCGTGCAGCTGCGAGTTTAGGCCTGC
JMSF027J10+           TGGGAGTGACAGAGGAAGTGATTGTTGAGGAGGTGCGTGCAGCTGCGAGTTTAGGCCTGC
                      ____________________________________________________________
consensus             TGGGAGTGACAGAGGAAGTGATTGTTGAGGAGGTGCGTGCAGCTGCGAGTTTAGGCCTGC
 
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JMFS137F10+           TGGATAGAAATGGGAGCGGGTGGGGGAGGATAGTGTGGAAACCGTTTCCGAAAAAGGAGG
JMSF005P15+           TGGATAGAAATGGGAGCGGGTGGGGGAGGATAGTGTGGAAACCGTTTCCGAAAAAGGAGG
JMSF027J10+           TGGATAGAAATGGGAGCGGGTGGGGGAGGATAGTGTGGAAACCGTTTCCGAAAAAGGAGG
                      ____________________________________________________________
consensus             TGGATAGAAATGGGAGCGGGTGGGGGAGGATAGTGTGGAAACCGTTTCCGAAAAAGGAGG
 
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JMFS137F10+           AAACCTCCATAGCTTTGGCGCCTTGAAGCTCGAAGGCGTCCGCCGTCC            
JMSF005P15+           AAACCTCCATAGCTTTGGCGCCTTGAAGCTCGAAGGCGTCCGCCGTCCGGGAGCTATCGC
JMSF027J10+           AAACCTCCATAGCTTTGGCGCCTTGAAGCTCGAAGGCGTCCGCCGTCCGGGAGCTATCGC
                      ____________________________________________________________
consensus             AAACCTCCATAGCTTTGGCGCCTTGAAGCTCGAAGGCGTCCGCCGTCCGGGAGCTATCGC