| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF028N17 | Sequence | 567 | 010733 (4) | emb|CDP18866.1| | 4e-84 | unnamed protein product [Coffea canephora] | |||||
| JMFF050J11 | Sequence | 630 | 010733 (4) | emb|CDP18866.1| | 4e-93 | unnamed protein product [Coffea canephora] | 546 | 001242 (6) | ref|NP_001234868.1| | 6e-51 | WD-40 repeat protein [Solanum lycopersicum] gb|AAK52092.1| WD-40 repeat protein |
| JMSF026H21 | Sequence | 654 | 010733 (4) | emb|CDP18866.1| | 1e-102 | unnamed protein product [Coffea canephora] | 758 | 001242 (6) | ref|XP_010255536.1| | 2e-117 | PREDICTED: suppressor of mec-8 and unc-52 protein homolog 1 [Nelumbo nucifera] |
| JMSF030K19 | Sequence | 645 | 010733 (4) | emb|CDP18866.1| | 3e-117 | unnamed protein product [Coffea canephora] | 721 | 001242 (6) | ref|XP_010255536.1| | 2e-112 | PREDICTED: suppressor of mec-8 and unc-52 protein homolog 1 [Nelumbo nucifera] |
This contig is upended
. : . : . : . : . : . :
JMSF030K19+ GGAAGTAATCCTTGATGCTGCTGCCACTTCAAAGCTTGACCGATCAAAGCCATTA
____________________________________________________________
consensus GGAAGTAATCCTTGATGCTGCTGCCACTTCAAAGCTTGACCGATCAAAGCCATTA
. : . : . : . : . : . :
JMSF030K19+ GTCGTGAAGGAGGGACAACAGAAACCTCTGTAGCAAGAGCTTGGCCTATTTGTGCACGCC
JMFF050J11+ GTAGCAAGAGCTTGGCCTATTNGTGCACGCC
JMSF026H21+ AAGGAGGGACAACAGAAACCTCTGTAGCAAGAGCTTGGCCTATTTGTGCACGCC
____________________________________________________________
consensus GTCGTGAAGGAGGGACAACAGAAACCTCTGTAGCAAGAGCTTGGCCTATTTGTGCACGCC
. : . : . : . : . : . :
JMSF030K19+ TTTTCTCTTTTGTTGAATCTTGATAAGCCTCATGCGGGTCAAAGTAAGTCCGAACTAATA
JMFF028N17+ CTCATGCGGGTCAAAGTAAGTCCGAACTAATA
JMFF050J11+ TTTCTTCTTTTGTGAATTCTGNATAAGCCTCATGCGGGTCAAAGTAAGTCCGAACTAATA
JMSF026H21+ TTTTCTCTTTTGTTGAATCTTGATAAGCCTCATGCGGGTCAAAGTAAGTCCGAACTAATA
____________________________________________________________
consensus TTTTCTCTTTTGTTGAATCTTGATAAGCCTCATGCGGGTCAAAGTAAGTCCGAACTAATA
. : . : . : . : . : . :
JMSF030K19+ GATGCTCAAGTCGTAGATATCTCTCTGGTTGTTCCTGCTTCATGACACCCATCACTTGTG
JMFF028N17+ GATGCTCAAGTCGTAGATATCTCTCTGGTTGTTCCTGCTTCATGACACCCATCACTTGTG
JMFF050J11+ GATGCTCAAGTCGTAGATATCTCTCTGGTTGTTCCTGCTTCATGACACCCATCACTTGTG
JMSF026H21+ GATGCTCAAGTCGTAGATATCTCTCTGGTTGTTCCTGCTTCATGACACCCATCACTTGTG
____________________________________________________________
consensus GATGCTCAAGTCGTAGATATCTCTCTGGTTGTTCCTGCTTCATGACACCCATCACTTGTG
. : . : . : . : . : . :
JMSF030K19+ TTTGCCTCAAAATAGCACGTGCAGTATCTATCTCCCGGAGTTCTATCATTTCTAAAACAA
JMFF028N17+ TTTGCCTCAAAATAGCACGTGCAGTATCTATCTCCCGGAGTTCTATCATTTCTAAAACAA
JMFF050J11+ TTTGCCTCAAAATAGCACGTGCAGTATCTATCTCCCGGAGTTCTATCATTTCTAAAACAA
JMSF026H21+ TTTGCCTCAAAATAGCACGTGCAGTATCTATCTCCCGGAGTTCTATCATTTCTAAAACAA
____________________________________________________________
consensus TTTGCCTCAAAATAGCACGTGCAGTATCTATCTCCCGGAGTTCTATCATTTCTAAAACAA
. : . : . : . : . : . :
JMSF030K19+ TCTGCTCATACAAATCCTCGAGTATTTTTCTAGGAAGCTTGAGCTGTGAGACCTGAGGTA
JMFF028N17+ TCTGCTCATACAAATCCTCGAGTATTTTTCTAGGAAGCTTGAGCTGTGAGACCTGAGGTA
JMFF050J11+ TCTGCTCATACAAATCCTCGAGTATTTTTCTAGGAAGCTTGAGCTGTGAGACCTGAGGTA
JMSF026H21+ TCTGCTCATACAAATCCTCGAGTATTTTTCTAGGAAGCTTGAGCTGTGAGACCTGAGGTA
____________________________________________________________
consensus TCTGCTCATACAAATCCTCGAGTATTTTTCTAGGAAGCTTGAGCTGTGAGACCTGAGGTA
. : . : . : . : . : . :
JMSF030K19+ ATACTGCATCCCATCGCCCACCATTAATATCAGCAACAAAAGTTTCAAGGCTACCCACTG
JMFF028N17+ ATACTGCATCCCATCGCCCACCATTAATATCAGCAACAAAAGTTTCAAGGCTATCCACTG
JMFF050J11+ ATACTGCATCCCATCGCCCACCATTAATATCAGCAACAAAAGTTTCAAGGCTATCCACTG
JMSF026H21+ ATACTGCATCCCATCGCCCACCATTAATATCAGCAACAAAAGTTTCAAGGCTATCCACTG
____________________________________________________________
consensus ATACTGCATCCCATCGCCCACCATTAATATCAGCAACAAAAGTTTCAAGGCTATCCACTG
. : . : . : . : . : . :
JMSF030K19+ TGTTGAGAGAAACCTGGCACTCATTTTGTAATGTTTGGAAAGTTTGATGCAAAGAATTTT
JMFF028N17+ TGTTGAGAGAAACCTGGCACTCATTTTGTAATGTTTGGAAAGTTTGATGCAAAGAATTTT
JMFF050J11+ TGTTGAGAGAAACCTGGCACTCATTTTGTAATGTTTGGAAAGTTTGATGCAAAGAATTTT
JMSF026H21+ TGTTGAGAGAAACCTGGCACTCATTTTGTAATGTTTGGAAAGTTTGATGCAAAGAATTTT
____________________________________________________________
consensus TGTTGAGAGAAACCTGGCACTCATTTTGTAATGTTTGGAAAGTTTGATGCAAAGAATTTT
. : . : . : . : . : . :
JMSF030K19+ CTTTGCAGAATTGAAGAACTATCTTAATTACATCTCGAGCTTCTATTTCAAGGGTGGACG
JMFF028N17+ CTTTGCAGAATTGAAGAACTATCTTAATTACATCTCGAGCTTCTATTTCAAGGGTGGACG
JMFF050J11+ CTTTGCAGAATTGAAGAACTATCTTAATTACATCTCGAGCTTCTATTTCAAGGGTGGACG
JMSF026H21+ CTTTGCAGAATTGAAGAACTATCTTAATTACATCTCGAGCTTCTATTTCAAGGGTGGACG
____________________________________________________________
consensus CTTTGCAGAATTGAAGAACTATCTTAATTACATCTCGAGCTTCTATTTCAAGGGTGGACG
. : . : . : . : . : . :
JMSF030K19+ ACATAGTTGAGTGATGGAGAATCGACTTTAACACTAAAACCCTAAATTGCTCTCGTCTTC
JMFF028N17+ ACATAGTTGAGTGATGGAGAATCGACTTTAACACTAAAACCCTAAATTGCTCTCGTCTTC
JMFF050J11+ ACATAGTTGAGTGATGGAGAATCGACTTTAACACTAAAACCCTAAATTGCTCTCGTCTTC
JMSF026H21+ ACATAGTTGAGTGATGGAGAATCGACTTTAACACTAAAACCCTAAATTGCTCTCGTCTTC
____________________________________________________________
consensus ACATAGTTGAGTGATGGAGAATCGACTTTAACACTAAAACCCTAAATTGCTCTCGTCTTC
. : . : . : . : . : . :
JMSF030K19+ TTCAACGAAACAGATTTTAACTGAGTAAGAGTAATCAATTCTTCGATA
JMFF028N17+ TTCAACGAAACAGATTTTAACTGAGTAAGAGTAATCAATTCTTCGATACGGGTTTGGCAT
JMFF050J11+ TTCAACGAAACAGATTTTAACTGAGTAAGAGTAATCAATTCTTCGATACGGGTTTGGCAT
JMSF026H21+ TTCAACGAAACAGATTTTAACTGAGTAAGAGTAATCAATTCTTCGATACGGGTTTGGCAT
____________________________________________________________
consensus TTCAACGAAACAGATTTTAACTGAGTAAGAGTAATCAATTCTTCGATACGGGTTTGGCAT
. : . : . : . : . : . :
JMFF028N17+ TCGGTTCGGGTTAGTATTCTAGCTGGGGCGCACCAAGTACCAACATCAGATTCCC
JMFF050J11+ TCGGTTCGGGTTAGTATTCTAGCTGGGGCGCACCAAGTACCAACATCAGATTCCC
JMSF026H21+ TCGGTTCGGGTTAGTATTCTAGCTGGGGCGCACCAAGTACCAACATCAGATTCCCGTTTC
____________________________________________________________
consensus TCGGTTCGGGTTAGTATTCTAGCTGGGGCGCACCAAGTACCAACATCAGATTCCCGTTTC