Contig 010731:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF021M15Sequence167010731 (3)557000428 (32)gb|AAF66824.1|AF190656_14e-66poly(A)-binding protein [Nicotiana tabacum]
JMSF017K12Sequence171010731 (3)690000428 (32)gb|AAF66824.1|AF190656_18e-66poly(A)-binding protein [Nicotiana tabacum]
JMSF026G11Sequence171010731 (3)742000428 (32)gb|AAF66824.1|AF190656_19e-69poly(A)-binding protein [Nicotiana tabacum]

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF021M15+                    TTTTTTTTTTGGGTTTTTTTGATANGNTTTTTTAAACCTTNAAAAAAAAAA
JMSF017K12+                        TTTTTTGGGTTTTTTTGNTNTGNTTTTTNAAACCNTNAAAAAAAAAA
JMSF026G11+                        TTTTTTGGGTTTTTTTGNTNTGNTTTTTTAAACCNTNAAAAAAAAAA
                      ____________________________________________________________
consensus                      TTTTTTTTTTGGGTTTTTTTGATATGNTTTTTTAAACCTTNAAAAAAAAAA
 
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JMFF021M15+           AAATAAAGAGAGGAGAGGGAAGTGTGGATAGGGAAGGATAGTCGGGAATCCGACAAGCGG
JMSF017K12+           AAATAAAGAGAGGAGAGGGAAGTGTGGATAGGGAAGGATAGTCGGGAATCCGACAAGCGG
JMSF026G11+           AAATAAAGAGAGGAGAGGGAAGTGTGGATAGGGAAGGATAGTCGGGAATCCGACAAGCGG
                      ____________________________________________________________
consensus             AAATAAAGAGAGGAGAGGGAAGTGTGGATAGGGAAGGATAGTCGGGAATCCGACAAGCGG
 
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JMFF021M15+           ACGAAGAGATCGCCGCCGGTGACTGAAATAGCAGACAGAGAGGAAGAGATGGAGAG    
JMSF017K12+           ACGAAGAGATCGCCGCCGGTGACTGAAATAGCAGACAGAGAGGAAGAGATGGAGAGGGCC
JMSF026G11+           ACGAAGAGATCGCCGCCGGTGACTGAAATAGCAGACAGAGAGGAAGAGATGGAGAGGGCC
                      ____________________________________________________________
consensus             ACGAAGAGATCGCCGCCGGTGACTGAAATAGCAGACAGAGAGGAAGAGATGGAGAGGGCC