Contig 010729:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS003B08Sequence577010729 (3)ref|XP_006361552.1|4e-69PREDICTED: U-box domain-containing protein 45-like [Solanum tuberosum]
JMSF019I09Sequence578010729 (3)ref|XP_009761877.1|2e-53PREDICTED: U-box domain-containing protein 45-like [Nicotiana sylvestris] ref|X736016083ref|XP_009761877.1|2e-97PREDICTED: U-box domain-containing protein 45-like [Nicotiana sylvestris] ref|X
JMSF026C03Sequence633010729 (3)ref|XP_006361552.1|1e-63PREDICTED: U-box domain-containing protein 45-like [Solanum tuberosum]767020404ref|XP_009761877.1|2e-86PREDICTED: U-box domain-containing protein 45-like [Nicotiana sylvestris] ref|X

Alignment

This contig is upended


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JMFS003B08+                                                                  ATCCC
                      ____________________________________________________________
consensus                                                                    ATCCC
 
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JMFS003B08+           CTGAAGTTCACTTAGAATTGAAGAAATCTGACAACCAATGGTTTGTGGAACTATATCTTC
JMSF026C03+                                      CTGACANCCAATGGTTTGTGGAACTATATCTTC
                      ____________________________________________________________
consensus             CTGAAGTTCACTTAGAATTGAAGAAATCTGACAACCAATGGTTTGTGGAACTATATCTTC
 
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JMFS003B08+           AACCCGATTTAGACCATCTTGAAGAGCACATCTTGATCTCTCAAATTTAAGTACAATAGA
JMSF019I09+                               GAAGAGCACATCTTGATCTCTCAAATTTAAGTACAATAGA
JMSF026C03+           AACCCGATTTAGACCATCTTGAAGAGCACATCTTGATCTCTCAAATTTAAGTACAATAGA
                      ____________________________________________________________
consensus             AACCCGATTTAGACCATCTTGAAGAGCACATCTTGATCTCTCAAATTTAAGTACAATAGA
 
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JMFS003B08+           GTCTCCAGTTATTGCCAGGTATAGTTTACTGCATTCAGCACAGTGCTGAAGAATATTCTT
JMSF019I09+           GTCTCCAGTTATTGCCAGGTATAGTTTACTGCATTCAGCACAGTGCTGAAGAATATTCTT
JMSF026C03+           GTCTCCAGTTATTGCCAGGTATAGTTTACTGCATTCAGCACAGTGCTGAAGAATATTCTT
                      ____________________________________________________________
consensus             GTCTCCAGTTATTGCCAGGTATAGTTTACTGCATTCAGCACAGTGCTGAAGAATATTCTT
 
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JMFS003B08+           TGTCTTCTCAAGGGCTATATGCAGAGCACACAATGCCTGAATACCTGTAGTGCTTCTTGG
JMSF019I09+           TGTCTTCTCAAGGGCTATATGCAGAGCACACAATGCCTGAATACCTGTAGTGCTTCTTGG
JMSF026C03+           TGTCTTCTCAAGGGCTATATGCAGAGCACACAATGCCTGAATACCTGTAGTGCTTCTTGG
                      ____________________________________________________________
consensus             TGTCTTCTCAAGGGCTATATGCAGAGCACACAATGCCTGAATACCTGTAGTGCTTCTTGG
 
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JMFS003B08+           TCGAGCCGCTTCCAGTTCAGGAAAAATTCCCAACACTTTTGCATAGATGGCAGATAGACT
JMSF019I09+           TCGAGCCGCTTCCAGTTCAGGAAAAATTCCCAACACTTTTGCATAGATGGCAGATAGACT
JMSF026C03+           TCGAGCCGCTTCCAGTTCAGGAAAAATTCCCAACACTTTTGCATAGATGGCAGATAGACT
                      ____________________________________________________________
consensus             TCGAGCCGCTTCCAGTTCAGGAAAAATTCCCAACACTTTTGCATAGATGGCAGATAGACT
 
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JMFS003B08+           CTTGCACATTCCTCCATGTAGCTTAGGTTCACCAATTGAGCATAAATTTTCTTCAACCTC
JMSF019I09+           CTTGCACATTCCTCCATGTAGCTTAGGTTCACCAATTGAGCATAAATTTTCTTCAACCTC
JMSF026C03+           CTTGCACATTCCTCCATGTAGCTTAGGTTCACCAATTGAGCATAAATTTTCTTCAACCTC
                      ____________________________________________________________
consensus             CTTGCACATTCCTCCATGTAGCTTAGGTTCACCAATTGAGCATAAATTTTCTTCAACCTC
 
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JMFS003B08+           AGAATTATCCATTATTTCACATTTAACACAGAAAAGAACAATCCTGCCGCTTATTATCGA
JMSF019I09+           AGAATTATCCATTATTTCACATTTAACACAGAAAAGAACAATCCTGCCGCTTATTATCGA
JMSF026C03+           AGAATTATCCATTATTTCACATTTAACACAGAAAAGAACAATCCTGCCGCTTATTATCGA
                      ____________________________________________________________
consensus             AGAATTATCCATTATTTCACATTTAACACAGAAAAGAACAATCCTGCCGCTTATTATCGA
 
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JMFS003B08+           AATAAACAGAACAGCATCAAAGCAGGCTTCATCAACGAAGCACTAAGACAGTAATGTGTG
JMSF019I09+           AATAAACAGAACAGCATCAAAGGAGGCTTCATCAACGAAGCACTAAGACAGTAATGTGTG
JMSF026C03+           AATAAACAGAACAGCATCAAAGGAGGCTTCATCAACGAAGCACTAAGACAGTAATGTGTG
                      ____________________________________________________________
consensus             AATAAACAGAACAGCATCAAAGGAGGCTTCATCAACGAAGCACTAAGACAGTAATGTGTG
 
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JMFS003B08+           GTCGCAGTAGATAATATTCGAATATATATACATGTATTGCTAATATAGATATACGACGGA
JMSF019I09+           GTCGCAGTAGATAATATTCGAATATATATACATGTATTGCTAATATAGATATACGACGGA
JMSF026C03+           GTCGCAGTAGATAATATTCGAATATATATACATGTATTGCTAATATAGATATACGACGGA
                      ____________________________________________________________
consensus             GTCGCAGTAGATAATATTCGAATATATATACATGTATTGCTAATATAGATATACGACGGA
 
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JMFS003B08+           GCTCAGTATTCAGATCAAGAGATTTTTAGAGA                            
JMSF019I09+           GCTCAGTATTCAGATCAAGAGATTTTTAGAGAGAGAAAACTGGGACGCAGGAGAGAGAGA
JMSF026C03+           GCTCAGTATTCAGATCAAGAGATTTTTAGAGAGAGAAAACTGGGACGCAGGAGAGAGAGA
                      ____________________________________________________________
consensus             GCTCAGTATTCAGATCAAGAGATTTTTAGAGAGAGAAAACTGGGACGCAGGAGAGAGAGA
 
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JMSF019I09+           GAGAGAGAGAAGAAGAGTGCTTTTTCAGGGTTATTAAAGAAGAGAGGATGAAGGAAT   
JMSF026C03+           GAGAGAGAGAAGAAGAGTGCTTTTTCAGGGTTATTAAAGAAGAGAGGATGAAGGAATAGC
                      ____________________________________________________________
consensus             GAGAGAGAGAAGAAGAGTGCTTTTTCAGGGTTATTAAAGAAGAGAGGATGAAGGAATAGC