Contig 010726:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF021M16Sequence635010726 (2)ref|XP_009103940.1|3e-18PREDICTED: chlorophyll a-b binding protein 6, chloroplastic isoform X2 [Brassic805012423 (27)ref|XP_004239673.1|1e-117PREDICTED: chlorophyll a-b binding protein 6A, chloroplastic [Solanum lycopersi
JMSF025L22Sequence690010726 (2)ref|XP_009103940.1|4e-15PREDICTED: chlorophyll a-b binding protein 6, chloroplastic isoform X2 [Brassic757002750 (3)ref|XP_008453995.1|1e-82PREDICTED: chlorophyll a-b binding protein 6A, chloroplastic isoform X1 [Cucumi

Alignment

This contig is upended


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JMSF021M16+               CTGGTATTATGATCCCAGGCACAGCAAGCATAGCCCATCTGCAGTGGATGAGCTCA
JMSF025L22+                                  CACAGCAAGCATAGCCCATCTGCAGTGGATGAGCTCA
                      ____________________________________________________________
consensus                 CTGGTATTATGATCCCAGGCACAGCAAGCATAGCCCATCTGCAGTGGATGAGCTCA
 
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JMSF021M16+           GATTCCTTGTATCTCTCAAGGTTTTCTGGCACTTCTCCTAGCCCAAGTGGGTCGAACCCG
JMSF025L22+           GATTCCTTGTATCTCTCAAGGTTTTCTGGCACTTCTCCTAGCCCAAGTGGGTCGAACCCG
                      ____________________________________________________________
consensus             GATTCCTTGTATCTCTCAAGGTTTTCTGGCACTTCTCCTAGCCCAAGTGGGTCGAACCCG
 
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JMSF021M16+           AAGTCTCTGCAAGTGCACACACAAATATAAACCTTTTTGTACGTATCACATAAGTTTTTT
JMSF025L22+           AAGTCTCTGCAAGTGCACACACAAATATAAACCTTTTTGTACGTATCACATAAGTTTTTT
                      ____________________________________________________________
consensus             AAGTCTCTGCAAGTGCACACACAAATATAAACCTTTTTGTACGTATCACATAAGTTTTTT
 
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JMSF021M16+           ATTTTTATTTTTGGTGTAAACCACAGTACCACACTGTGGTCTCGGTCTTTCTATGTCCGT
JMSF025L22+           ATTTTTATTTTTGGTGTAAACCACAGTACCACACTGTGGTCTCGGTCTTTCTATGTCCGT
                      ____________________________________________________________
consensus             ATTTTTATTTTTGGTGTAAACCACAGTACCACACTGTGGTCTCGGTCTTTCTATGTCCGT
 
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JMSF021M16+           TTAACGGTCCAGGTCAGGGAATAGTTACTTCTAGGAATCAAATCCGAGTTATCCAGAAAT
JMSF025L22+           TTAACGGTCCAGGTCAGGGAATAGTTACTTCTAGGAATCAAATCCGAGTTATCCAGAAAT
                      ____________________________________________________________
consensus             TTAACGGTCCAGGTCAGGGAATAGTTACTTCTAGGAATCAAATCCGAGTTATCCAGAAAT
 
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JMSF021M16+           TTTCCCCACAAAGAGCTCAACAAACCACATAATTAACTTCATCAATCTCATTTTATTGTA
JMSF025L22+           TTTCCCCACAAAGAGCTCAACAAACCACATAATTAACTTCATCAATCTCATTTTATTGTA
                      ____________________________________________________________
consensus             TTTCCCCACAAAGAGCTCAACAAACCACATAATTAACTTCATCAATCTCATTTTATTGTA
 
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JMSF021M16+           TAATTTTCAACTATGCATGTTGATATAGTGTAAAAAATGGAAGTTAATTACCCGGGTGCA
JMSF025L22+           TAATTTTCAACTATGCATGTTGATATAGTGTAAAAAATGGAAGTTAATTACCCGGGTGCA
                      ____________________________________________________________
consensus             TAATTTTCAACTATGCATGTTGATATAGTGTAAAAAATGGAAGTTAATTACCCGGGTGCA
 
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JMSF021M16+           GAGCCGTCGAGGTAAGGTGGACGGGGCTGGCCGGGCATCCAGTCGGAGGAGGACATGGTG
JMSF025L22+           GAGCCGTCGAGGTAAGGTGGACGGGGCTGGCCGGGCATCCAGTCGGAGGAGGACATGGTG
                      ____________________________________________________________
consensus             GAGCCGTCGAGGTAAGGTGGACGGGGCTGGCCGGGCATCCAGTCGGAGGAGGACATGGTG
 
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JMSF021M16+           ATCCTGCCGGAGGCGGTGACATTTGCGGCGACGGGCAAGGGCACGGCGGTGGCGAACTTG
JMSF025L22+           ATCCTGCCGGAGGCGGTGACATTTGCGGCGACGGGCAAGGGCACGGCGGTGGCGAACTTG
                      ____________________________________________________________
consensus             ATCCTGCCGGAGGCGGTGACATTTGCGGCGACGGGCAAGGGCACGGCGGTGGCGAACTTG
 
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JMSF021M16+           GACTTAGAAGAAGAGAGAACGGAGGAGCAAACGGCTGCGACGCCGCAGCTCATCAATCTG
JMSF025L22+           GACTTAGAAGAAGAGAGAACGGAGGAGCAAACGGCTGCGACGCCGCAGCTCATCAATCTG
                      ____________________________________________________________
consensus             GACTTAGAAGAAGAGAGAACGGAGGAGCAAACGGCTGCGACGCCGCAGCTCATCAATCTG
 
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JMSF021M16+           GACGCCATTTTTTCTTTGAGCGATCGAGGGAAATTGT                       
JMSF025L22+           GACGCCATTTTTTCTTTGAGCGATCGAGGGAAATTGTCGGGAAGGGAGAAAATGGGCTTC
                      ____________________________________________________________
consensus             GACGCCATTTTTTCTTTGAGCGATCGAGGGAAATTGTCGGGAAGGGAGAAAATGGGCTTC