Contig 010715:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS020F06Sequence625010715 (6)ref|XP_010323130.1|5e-60PREDICTED: rab3 GTPase-activating protein catalytic subunit isoform X3 [Solanum
JMFS026H11Sequence622010715 (6)ref|XP_009779078.1|3e-65PREDICTED: rab3 GTPase-activating protein catalytic subunit-like isoform X4 [Ni
JMFS026H12Sequence615010715 (6)ref|XP_010323131.1|3e-63PREDICTED: rab3 GTPase-activating protein catalytic subunit isoform X4 [Solanum
JMFS091E11Sequence626010715 (6)ref|XP_010323125.1|2e-59PREDICTED: rab3 GTPase-activating protein catalytic subunit isoform X1 [Solanum
JMFS142H03Sequence625010715 (6)ref|XP_010323131.1|1e-63PREDICTED: rab3 GTPase-activating protein catalytic subunit isoform X4 [Solanum
JMSF024F18Sequence704010715 (6)ref|XP_009779078.1|2e-74PREDICTED: rab3 GTPase-activating protein catalytic subunit-like isoform X4 [Ni705022542ref|XP_006350858.1|5e-102PREDICTED: rab3 GTPase-activating protein catalytic subunit-like isoform X2 [So

Alignment

This contig is upended


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JMSF024F18+                           GTGATGGATCATGCACTGGAACAAAAGCGGGCCACAAACTGGAA
                      ____________________________________________________________
consensus                             GTGATGGATCATGCACTGGAACAAAAGCGGGCCACAAACTGGAA
 
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JMFS020F06+                            AGCAACTGCACTTAATAGCTTGGTTGCCTCTGGTCTATCAAGA
JMFS091E11+                             GCAACTGCACTTAATAGCTTGGTTGCCTCTGGTCTATCAAGA
JMFS142H03+             GTTCGACAATGCAATAGCAACTGCACTTAATAGCTTGGTGCCCTCTGGTCTATCAAGA
JMFS026H12+             GTTCGACAATGCAATAGCAACTGCACTTAATAGCTTGGTTGCCTCTGGTCTATCAAGA
JMFS026H11+             GTTCGACAATGCAATAGCAACTGCACTTAATAGCTTGGTTGCCTCTGGTCTATCAAGA
JMSF024F18+           CAGTTCGACAATGCAATAGCAACTGCACTTAATAGCTTGGTTGCCTCTGGTCTATCAAGA
                      ____________________________________________________________
consensus             CAGTTCGACAATGCAATAGCAACTGCACTTAATAGCTTGGTTGCCTCTGGTCTATCAAGA
 
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JMFS020F06+           AGCACGCCACTTGCACTTTGTGGAGCAATCACCAGAAAGTCTTTCACCCCAAAGGAGAGC
JMFS091E11+           AGCACGCCACTTGCACTTTGTGGAGCAATCACCAGAAAGTCTTTCACCCCAAAGGAGAGC
JMFS142H03+           AGCACGCCACTTGCACTTTGTGGAGCAATCACCAGAAAGTCTTTCACCCCAAAGGAGAGC
JMFS026H12+           AGCACGCCACTTGCACTTTGTGGAGCAATCACCAGAAAGTCTTTCACCCCAAAGGAGAGC
JMFS026H11+           AGCACGCCACTTGCACTTTGTGGAGCAATCACCAGAAAGTCTTTCACCCCAAAGGAGAGC
JMSF024F18+           AGCACGCCACTTGCACTTTGTGGAGCAATCACCAGAAAGTCTTTCACCCCAAAGGAGAGC
                      ____________________________________________________________
consensus             AGCACGCCACTTGCACTTTGTGGAGCAATCACCAGAAAGTCTTTCACCCCAAAGGAGAGC
 
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JMFS020F06+           TGCAAATCATGCAACTCATTAGTCCAATAACTCCAATCACTCATTTTTCCATCATTATTT
JMFS091E11+           TGCAAATCATGCAACTCATTAGTCCAATAACTCCAATCACTCATTTTTCCATCATTATTT
JMFS142H03+           TGCAAATCATGCAACTCATTAGTCCAATAACTCCAATCACTCATTTTTCCATCATTATTT
JMFS026H12+           TGCAAATCATGCAACTCATTAGTCCAATAACTCCAATCACTCATTTTTCCATCATTATTT
JMFS026H11+           TGCAAATCATGCAACTCATTAGTCCAATAACTCCAATCACTCATTTTTCCATCATTATTT
JMSF024F18+           TGCAAATCATGCAACTCATTAGTCCAATAACTCCAATCACTCATTTTTCCATCATTATTT
                      ____________________________________________________________
consensus             TGCAAATCATGCAACTCATTAGTCCAATAACTCCAATCACTCATTTTTCCATCATTATTT
 
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JMFS020F06+           GTTTCAAAATAGTACTCCATCAAATAGCCTTTACTAGCATACTTAAGGTCAGATTTGACC
JMFS091E11+           GTTTCAAAATAGTACTCCATCAAATAGCCTTTACTAGCATACTTAAGGTCAGATTTGACC
JMFS142H03+           GTTTCAAAATAGTACTCCATCAAATAGCCTTTACTAGCATACTTAAGGTCAGATTTGACC
JMFS026H12+           GTTTCAAAATAGTACTCCATCAAATAGCCTTTACTAGCATACTTAAGGTCAGATTTGACC
JMFS026H11+           GTTTCAAAATAGTACTCCATCAAATAGCCTTTACTAGCATACTTAAGGTCAGATTTGACC
JMSF024F18+           GTTTCAAAATAGTACTCCATCAAATAGCCTTTACTAGCATACTTAAGGTCAGATTTGACC
                      ____________________________________________________________
consensus             GTTTCAAAATAGTACTCCATCAAATAGCCTTTACTAGCATACTTAAGGTCAGATTTGACC
 
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JMFS020F06+           CTATAAAGGCCTTCAGGGGCATCCAAGCAGACAGCACCCTTCTTCAATAAATTTCTAGGG
JMFS091E11+           CTATAAAGGCCTTCAGGGGCATCCAAGCAGACAGCACCCTTCTTCAATAAATTTCTAGGG
JMFS142H03+           CTATAAAGGCCTTCAGGGGCATCCAAGCAGACAGCACCCTTCTTCAATAAATTTCTAGGG
JMFS026H12+           CTATAAAGGCCTTCAGGGGCATCCAAGCAGACAGCACCCTTCTTCAATAAATTTCTAGGG
JMFS026H11+           CTATAAAGGCCTTCAGGGGCATCCAAGCAGACAGCACCCTTCTTCAATAAATTTCTAGGG
JMSF024F18+           CTATAAAGGCCTTCAGGGGCATCCAAGCAGACAGCACCCTTCTTCAATAAATTTCTAGGG
                      ____________________________________________________________
consensus             CTATAAAGGCCTTCAGGGGCATCCAAGCAGACAGCACCCTTCTTCAATAAATTTCTAGGG
 
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JMFS020F06+           CCATCTGCCAACCATTGCCTGCAAACTGCCTCTATCTCAGATATAAACCTTTCCCATGTA
JMFS091E11+           CCATCTGCCAACCATTGCCTGCAAACTGCCTCTATCTCAGATATAAACCTTTCCCATGTA
JMFS142H03+           CCATCTGCCAACCATTGCCTGCAAACTGCCTCTATCTCAGATATAAACCTTTCCCATGTA
JMFS026H12+           CCATCTGCCAACCATTGCCTGCAAACTGCCTCTATCTCAGATATAAACCTTTCCCATGTA
JMFS026H11+           CCATCTGCCAACCATTGCCTGCAAACTGCCTCTATCTCAGATATAAACCTTTCCCATGTA
JMSF024F18+           CCATCTGCCAACCATTGCCTGCAAACTGCCTCTATCTCAGATATAAACCTTTCCCATGTA
                      ____________________________________________________________
consensus             CCATCTGCCAACCATTGCCTGCAAACTGCCTCTATCTCAGATATAAACCTTTCCCATGTA
 
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JMFS020F06+           GAAGCCAAAGTAAAATCATCAAAATGCTCAAACTCCTCTTCCTGATTATCGTCCTCTGGA
JMFS091E11+           GAAGCCAAAGTAAAATCATCAAAATGCTCAAACTCCTCTTCCTGATTATCGTCCTCTGGA
JMFS142H03+           GAAGCCAAAGTAAAATCATCAAAATGCTCAAACTCCTCTTCCTGATTATCGTCCTCTGGA
JMFS026H12+           GAAGCCAAAGTAAAATCATCAAAATGCTCAAACTCCTCTTCCTGATTATCGTCCTCTGGA
JMFS026H11+           GAAGCCAAAGTAAAATCATCAAAATGCTCAAACTCCTCTTCCTGATTATCGTCCTCTGGA
JMSF024F18+           GAAGCCAAAGTAAAATCATCAAAATGCTCAAACTCCTCTTCCTGATTATCGTCCTCTGGA
                      ____________________________________________________________
consensus             GAAGCCAAAGTAAAATCATCAAAATGCTCAAACTCCTCTTCCTGATTATCGTCCTCTGGA
 
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JMFS020F06+           GGGGTCGGTCCTTTGCTTGTGGATGCCATGAAACCGCAGCGAAGCTCAAATTGAAACAAT
JMFS091E11+           GGGGTCGGTCCTTTGCTTGTGGATGCCATGAAACCGCAGCGAAGCTCAAATTGAAACAAT
JMFS142H03+           GGGGTCGGTCCTTTGCTTGTGGATGCCATGAAACCGCAGCGAAGCTCAAATTGAAACAAT
JMFS026H12+           GGGGTCGGTCCTTTGCTTGTGGATGCCATGAAACCGCAGCGAAGCTCAAATTGAAACAAT
JMFS026H11+           GGGGTCGGTCCTTTGCTTGTGGATGCCATGAAACCGCAGCGAAGCTCAAATTGAAACAAT
JMSF024F18+           GGGGTCGGTCCTTTGCTTGTGGATGCCATGAAACCGCAGCGAAGCTCAAATTGAAACAAT
                      ____________________________________________________________
consensus             GGGGTCGGTCCTTTGCTTGTGGATGCCATGAAACCGCAGCGAAGCTCAAATTGAAACAAT
 
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JMFS020F06+           TGAAAGCAACAAATCGAACGATTCGGACATTACAGAATGCAGATATTTCTCGCGATCTGT
JMFS091E11+           TGAAAGCAACAAATCGAACGATTCGGACATTACAGAATGCAGATATTTCTCGCGATCTGT
JMFS142H03+           TGAAAGCAACAAATCGAACGATTCGGACATTACAGAATGCAGATATTTCTCGCGATCTGT
JMFS026H12+           TGAAAGCAACAAATCGAACGATTCGGACATTACAGAATGCAGATATTTCTCGCGATCTGT
JMFS026H11+           TGAAAGCAACAAATCGAACGATTCGGACATTACAGAATGCAGATATTTCTCGCGATCTGT
JMSF024F18+           TGAAAGCAACAAATCGAACGATTCGGACATTACAGAATGCAGATATTTCTCGCGATCTGT
                      ____________________________________________________________
consensus             TGAAAGCAACAAATCGAACGATTCGGACATTACAGAATGCAGATATTTCTCGCGATCTGT
 
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JMFS020F06+           GAATCTATCGGGAGAGTGTTAAAAGGCGAGAAACGTCGAAGATCATAGATGCGTTGAGTT
JMFS091E11+           GAATCTATCGGGAGAGTGTTAAAAGGCGAGAAACGTCGAAGATCATAGATGCGTTGAGTT
JMFS142H03+           GAATCTATCGGGAGAGTGTTAAAAGGCGAGAAACGTCGAAGATCATAGATGCGTTGAGTT
JMFS026H12+           GAATCTATCGGGAGAGTGTTAAAAGGCGAGAAACGTCGAAGATCATAGATGCGTTGAGTT
JMFS026H11+           GAATCTATCGGGAGAGTGTTAAAAGGCGAGAAACGTCGAAGATCATAGATGCGTTGAGTT
JMSF024F18+           GAATCTATCGGGAGAGTGTTAAAAGGCGAGAAACGTCGAAGATCATAGATGCGTTGAGTT
                      ____________________________________________________________
consensus             GAATCTATCGGGAGAGTGTTAAAAGGCGAGAAACGTCGAAGATCATAGATGCGTTGAGTT
 
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JMFS020F06+           CCGTCGACGGTGCGGTGACTGCGGTCTTAATGGGGCGGAAAT                  
JMFS091E11+           CCGTCGACGGTGCGGTGACTGCGGTCTTAATGGGGCGGAAAT                  
JMFS142H03+           CCGTCGACGGTGCGGTGACTGCGG                                    
JMFS026H12+           CCGTCGACGGTG                                                
JMFS026H11+           CCGTCGACGGTG                                                
JMSF024F18+           CCGTCGACGGTGCGGTGACTGCGGTCTTAATGGGGCGGAAATGATGAGAAGTGAATAACC
                      ____________________________________________________________
consensus             CCGTCGACGGTGCGGTGACTGCGGTCTTAATGGGGCGGAAATGATGAGAAGTGAATAACC