Contig 010712:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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JMSF024B12+                                                                  AATAA
                      ____________________________________________________________
consensus                                                                    AATAA
 
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rJMSF024B12-                                                    GTAATGGCAATTGGTTAA
rJMSF012D09-                                         TAAAAGAGGAGGTAATGGCAATTGGTTAA
JMSF024B12+           ACATTTAGACTTTATTATTATTCAATATTCATAAAAGAGGAGGTAATGGCAATTGGTTAA
                      ____________________________________________________________
consensus             ACATTTAGACTTTATTATTATTCAATATTCATAAAAGAGGAGGTAATGGCAATTGGTTAA
 
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rJMSF024B12-          AAAGATACATGCAGGAGTGTTTCTATAAGCAAATATAATGACAAATTCATAAAGCTGAGG
rJMSF012D09-          AAAGATACATGCAGGAGTGTTTCTATAAGCAAATATAATGACAAATTCATAAAGCTGAGG
JMSF024B12+           AAAGATACATGCAGGAGTGTTTCTATAAGCAAATATAATGACAAATTCATAAAGCTGAGG
                      ____________________________________________________________
consensus             AAAGATACATGCAGGAGTGTTTCTATAAGCAAATATAATGACAAATTCATAAAGCTGAGG
 
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rJMSF024B12-          CTATCAACTACTATGTAGTATGATGATAACACCTCTTATTATTATGCAGATATGTAATAC
rJMSF012D09-          CTATCAACTACTATGTAGTATGATGATAACACCTC-TATTATTATGCAGATATGTAATAC
JMSF024B12+           CTATCAACTACTATGTAGTATGATGATAACACCTCTTATTATTATGCAGATATGTAATAC
                      ____________________________________________________________
consensus             CTATCAACTACTATGTAGTATGATGATAACACCTCTTATTATTATGCAGATATGTAATAC
 
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rJMSF024B12-          TTTTTCACTAAAATATACAAAGTAATATTTAAATAAAGTTGAGGCCAGCTTTCATATTTT
rJMSF012D09-          TTTTTCACTAAAATATACAAAGTAATATTTAAATAAAGTTGAGGCCAGCTTTCATATTTT
JMSF020H08+           TTTTTCGCTAAAATATACAAAGTAATATTTAAATAAAGTTGAGGCCAGCTTTCATATTTT
JMSF024B12+           TTTTTCACTAAAATATACAAAGTAATATTTAAATAAAGTTGAGGCCAGCTTTCATATTTT
                      ____________________________________________________________
consensus             TTTTTCACTAAAATATACAAAGTAATATTTAAATAAAGTTGAGGCCAGCTTTCATATTTT
 
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rJMSF024B12-          CAATACTGAGACGTGTAATACTTTTTATTATAATGTAATTTTTTTATATAAATTTATAGA
rJMSF012D09-          CAATACTGAGACGTGTAATACTTTTTATTATAATGTAATTTTTTTATATAAATTTATAGA
JMSF020H08+           CAATACTGAGACGTGTAATACTTTTTATTATAATGTAATTTTTTTATATAAATTTATAGA
rJMSF020H08-            ATACTGAGACGTGTAATACTTTTTATTATAATGTAATTTTTTTATATAAATTTATAGA
JMSF024B12+           CAATACTGAGACGTGTAATACTTTTTATTATAATGTAATTTTTTTATATAAATTTATAGA
                      ____________________________________________________________
consensus             CAATACTGAGACGTGTAATACTTTTTATTATAATGTAATTTTTTTATATAAATTTATAGA
 
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rJMSF024B12-          AAAATATTATATTTTAACTAAAAGTATTACACGTCATCTTATAGAGACGACGTCATACAA
rJMSF012D09-          AAAATATTATATTTTAACTAAAAGTATTACACGTCATCTTATAGAGACGACGTCATACAA
JMSF020H08+           AAAATATTATATTTTAACTAAAAGTATTACACGTCATCTTATAGAGACGACGTCATACAA
JMSF006L18+                       TTTAACTAAAAGTATTACACGTCATCTTATAGAGACGACGTCATACAA
rJMSF020H08-          AAAATATTATATTTTAACTAAAAGTATTACACGTCATCTTATAGAGACGACGTCATACAA
JMSF024B12+           AAAATATTATATTTTAACTAAAAGTATTACACGTCATCTTATAGAGACGACGTCATACAA
                      ____________________________________________________________
consensus             AAAATATTATATTTTAACTAAAAGTATTACACGTCATCTTATAGAGACGACGTCATACAA
 
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rJMSF024B12-          TATTTGCTTGGTTTAATTGGATGGCTCTGATGGAGGAACGCCGCAAGAGCGATTGTTGAA
rJMSF012D09-          TATTTGCTTGGTTTAATTGGATGGCTCTGATGGAGGAACGCCGCAAGAGCGATTGTTGAA
JMSF020H08+           TATTTGCTTGGTTTAATTGGATGGCTCTGATGGAGGAACGCCGCAAGAGCGATTGTTGAA
JMSF006L18+           TATTTGCTTGGTTTAATTGGATGGCTCTGATGGAGGAACGCCGCAAGAGCGATTGTTGAA
rJMSF020H08-          TATTTGCTTGGTTTAATTGGATGGCTCTGATGGAGGAACGCCGCAAGAGCGATTGTTGAA
JMSF024B12+           TATTTGCTTGGTTTAATTGGATGGCTCTGATGGAGGAACGCCGCAAGAGCGATTGTTGAA
                      ____________________________________________________________
consensus             TATTTGCTTGGTTTAATTGGATGGCTCTGATGGAGGAACGCCGCAAGAGCGATTGTTGAA
 
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rJMSF024B12-          GCCGCACCTTCGAGGCTTTGGTCGGGCACCAATACAGCTGCCATATCTACGATTATTACA
rJMSF012D09-          GCCGCACCTTCGAGGCTTTGGTCGGGCACCAATACAGCTGCCATATCTACGATTATTACA
JMSF020H08+           GCCGCACCTTCGAGGCTTTGGTCGGGCACCAATACAGCTGCCATATCTACGATTATTACA
JMSF006L18+           GCCGCACCTTCGAGGCTTTGGTCGGGCACCAATACAGCTGCCATATCTACGATTATTACA
JMSF012D09+                           TTTGGTCGGNCACCAATACAGCTGCCATATCTACGATTATTACA
rJMSF020H08-          GCCGCACCTTCGAGGCTTTGGTCGGGCACCAATACAGCTGCCATATCTACGATTATTACA
JMSF024B12+           GCCGCACCTTCGAGGCTTTGGTCGGGCACCAATACAGCTGCCATATCTACGATTATTACA
                      ____________________________________________________________
consensus             GCCGCACCTTCGAGGCTTTGGTCGGGCACCAATACAGCTGCCATATCTACGATTATTACA
 
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rJMSF024B12-          TATGGGCCCTTTTTTCAAAGGGTTACCTATAGGATGACTTCCCTGAGTTTCATCGGACAG
rJMSF012D09-          TATGGGCCCTTTTTTCAAAGGGTTACCTATAGGATGACTTCCCTGAGTTTCATCGGACAG
JMSF020H08+           TATGGGCCCTTTTTTCAAAGGGTTACCTATAGGATGACTTCCCTGAGTTTCATCGGACAG
JMSF006L18+           TATGGGCCCTTTTTTCAAAGGGTTACCTATAGGATGACTTCCCTGAGTTTCATCGGACAG
JMSF012D09+           TATGGGCCCTTTTTTCAAAGGGTTACCTATAGGATGACTTCCCTGAGTTTCATCGGACAG
rJMSF020H08-          TATGGGCCCTTTTTTCAAAGGGTTACCTATAGGATGACTTCCCTGAGTTTCATCGGACAG
JMSF024B12+           TATGGGCCCTTTTTTCAAAGGGTTACCTATAGGATGACTTCCCTGAGTTTCATCGGACAG
                      ____________________________________________________________
consensus             TATGGGCCCTTTTTTCAAAGGGTTACCTATAGGATGACTTCCCTGAGTTTCATCGGACAG
 
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rJMSF024B12-          TTTCCGAGCACATGTGAGGGGAGAAACAATGAAGAGAAGTATGAAGAAAAGAGAAAAGAG
rJMSF012D09-          TTTCCGAGCACATGTGAGGGGAGAAACAATGAAGAGAAGTATGANGAANAGAGAAAAGAG
JMSF020H08+           TTTCCGAGCACATGTGAGGGGAGAAACAATGAAGAGAAGTATGAAGAAAAGAGAAAAGAG
JMSF006L18+           TTTCCGAGCACATGTGAGGGGAGAAACAATGAAGAGAAGTATGAAGAAAAGAGAAAAGAG
JMSF012D09+           TTTCCGAGCACATGTGAGGGGAGAAACAATGAAGAGAAGTATGAAGAAAAGAGAAAAGAG
rJMSF020H08-          TTTCCGAGCACATGTGAGGGGAGAAACAATGAAGAGAAGTATGAAGAAAAGAGAAAAGAG
JMSF024B12+           TTTCCGAGCACATGTGAGGGGAGAAACAATGAAGAGAAGTATGAAGAAAAGAGAAAAGAG
                      ____________________________________________________________
consensus             TTTCCGAGCACATGTGAGGGGAGAAACAATGAAGAGAAGTATGAAGAAAAGAGAAAAGAG
 
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rJMSF024B12-          CTTGGCATTCATGGCTGCTGATTGGCTGAGATATATGTGTGTGTAGATTTTGTGTATACC
rJMSF012D09-          CTTGGCATTCATGGCTGCTGATTGGCTGAGATATATGTGTGTGTAGATTTTGTGTATAC 
JMSF020H08+           CTTGGCATTCATGGCTGCTGATTGGCTGAGATATATGTGTGTGTAGATTTTGTGTATACC
JMSF006L18+           CTTGGCATTCATGGCTGCTGATTGGCTGAGATATATGTGTGTGTAGATTTTGTGTATAC 
JMSF012D09+           CTTGGCATTCATGGCTGCTGATTGGCTGAGATATATGTGTGTGTAGATTTTGTGTATAC 
rJMSF020H08-          CTTGGCATTCATGGCTGCTGATTGGCTGAGATATATGTGTGTGTAGATTTTGTGTATACC
JMSF024B12+           CTTGGCATTCATGGCTGCTGATTGGCTGAGATATATGTGTGTGTAGATTTTGTGTATACC
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consensus             CTTGGCATTCATGGCTGCTGATTGGCTGAGATATATGTGTGTGTAGATTTTGTGTATACC