Contig 010705:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF017F01Sequence291010705 (3)
JMSF023I11Sequence655010705 (3)ref|XP_009630469.1|1e-64PREDICTED: tRNA (uracil-5-)-methyltransferase homolog A [Nicotiana tomentosifor751017149ref|XP_004297623.1|2e-47PREDICTED: tRNA (uracil-5-)-methyltransferase homolog A [Fragaria vesca subsp.
JMSF024P10Sequence686010705 (3)ref|XP_009630469.1|2e-87PREDICTED: tRNA (uracil-5-)-methyltransferase homolog A [Nicotiana tomentosifor729008451 (2)emb|CDP20634.1|4e-111unnamed protein product [Coffea canephora]

Alignment

This contig is upended


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JMSF024P10+                  CAAACTGGATATCACAAGGAACAATGGGTTGCATCACATGAGCAAATTCTGGA
                      ____________________________________________________________
consensus                    CAAACTGGATATCACAAGGAACAATGGGTTGCATCACATGAGCAAATTCTGGA
 
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JMSF024P10+           TTTTGATCTGAGAACTTGCCTACATGTACAACAAGCTCACGAACTTGTTGCTCTTTGGCT
JMSF023I11+               GATCTGAGAACTTGCCTACATGTACAACAAGCTCACGAACTTGTTG-ACTTTGGCT
                      ____________________________________________________________
consensus             TTTTGATCTGAGAACTTGCCTACATGTACAACAAGCTCACGAACTTGTTGCTCTTTGGCT
 
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JMSF024P10+           TTGAGCTGAGCTTCGTATGATAAATTCTGGGTCTTGCAACCTCCACAATGTGAAGCATAT
JMSF023I11+           TTGAGCTGAGCTTCGTATGATAAATTCTGGGTCTTGCAACCTCCACAATGTGAAGCATAT
                      ____________________________________________________________
consensus             TTGAGCTGAGCTTCGTATGATAAATTCTGGGTCTTGCAACCTCCACAATGTGAAGCATAT
 
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JMSF024P10+           TCACATGGTGCTTCAACATAGTCCCAATGAGGTGTAATGGTCTTCATTTTCCTAACCTCA
JMSF023I11+           TCACATGGTGCTTCAACATAGTCCCAATGAGGTGTAATGGTCTTCATTTTCCTAACCTCA
                      ____________________________________________________________
consensus             TCACATGGTGCTTCAACATAGTCCCAATGAGGTGTAATGGTCTTCATTTTCCTAACCTCA
 
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JMSF024P10+           GCATAATTGTCTTTTTTGCGAGTGACGACGCCAATGAAGCGTTCTCCGGGGAGAGCACGG
JMSF023I11+           GCATAATTGTCTTTTTTGCGAGTGACGACGCCAATGAAGCGTTCTCCGGGGAGAGCACGG
                      ____________________________________________________________
consensus             GCATAATTGTCTTTTTTGCGAGTGACGACGCCAATGAAGCGTTCTCCGGGGAGAGCACGG
 
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JMSF024P10+           TCGCACATTACCACGAAGCCAGTATCGGCGACCTTGCAAAGGCCTTTGCCTTTGAAAGCT
JMSF023I11+           TCGCACATTACCACGAAGCCAGTATCGGCGACCTTGCAAAGGCCTTTGCCTTTGAAAGCT
                      ____________________________________________________________
consensus             TCGCACATTACCACGAAGCCAGTATCGGCGACCTTGCAAAGGCCTTTGCCTTTGAAAGCT
 
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JMSF024P10+           AGAGATTCACAAACCAGCTCCAAGGTCTGCCCTCGCCTAGGAAAAAATGACTTTTTCGCC
JMSF023I11+           AGAGATTCACAAACCAGCTCCAAGGTCTGCCCTCGCCTAGGAAAAAATGACTTTTTCGCC
                      ____________________________________________________________
consensus             AGAGATTCACAAACCAGCTCCAAGGTCTGCCCTCGCCTAGGAAAAAATGACTTTTTCGCC
 
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JMSF024P10+           TTATCAGTTCTGTTGTTACTGCTAGTAGTACTGTTAGGTTTTTCTGCTGTTGTGTTCAGC
JMSF017F01+           TTATCAGTTCTGTTGTTACTGCTAGTAGTACTGTTAGGTTTTTCTGCTGTTGTGTTCAGC
JMSF023I11+           TTATCAGTTCTGTTGTTACTGCTAGTAGTACTGTTAGGTTTTTCTGCTGTTGTGTTCAGC
                      ____________________________________________________________
consensus             TTATCAGTTCTGTTGTTACTGCTAGTAGTACTGTTAGGTTTTTCTGCTGTTGTGTTCAGC
 
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JMSF024P10+           GGAGTGTCGTCGGTGTCTTCGACTGAGGAGAGAGAAGAAAGTATCGAGATAGAACGTGGA
JMSF017F01+           GGAGTGTCGTCGGTGTCTTCGACTGAGGAGAGAGAAGAAAGTATCGAGATAGAACGTGGA
JMSF023I11+           GGAGTGTCGTCGGTGTCTTCGACTGAGGAGAGAGAAGAAAGTATCGAGATAGAACGTGGA
                      ____________________________________________________________
consensus             GGAGTGTCGTCGGTGTCTTCGACTGAGGAGAGAGAAGAAAGTATCGAGATAGAACGTGGA
 
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JMSF024P10+           GAAGGAGCTGGTCTTCTCGTGGAACAGAGGCTGTGTAGCCATGGCCGTGAAGGTAGACGG
JMSF017F01+           GAAGGAGCTGGTCTTCTCGTGGAACAGAGGCTGTGTAGCCATGGCCGTGAAGGTAGACGG
JMSF023I11+           GAAGGAGCTGGTCTTCTCGTGGAACAGAGGCTGTGTAGCCATGGCCGTGAAGGTAGACGG
                      ____________________________________________________________
consensus             GAAGGAGCTGGTCTTCTCGTGGAACAGAGGCTGTGTAGCCATGGCCGTGAAGGTAGACGG
 
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JMSF024P10+           CGGAGGCCAAAGCTCGGCACTGCCGCCATTGTTGGGCTAAGAAGCTGTGAGAGTGAGCTC
JMSF017F01+           CGGAGGCCAAAGCTCGGCACTGCCGCCATTGTTGGGCTAAGAAGCTGTGAGAGTGAGCTC
JMSF023I11+           CGGAGGCCAAAGCTCGGCACTGCCGCCATTGTTGGGCTAAGAAGCTGTGAGAGTGAGCTC
                      ____________________________________________________________
consensus             CGGAGGCCAAAGCTCGGCACTGCCGCCATTGTTGGGCTAAGAAGCTGTGAGAGTGAGCTC
 
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JMSF024P10+           GTAATCCAGACGAAATGAATGGATTACGCA                              
JMSF017F01+           GTAATCCAGACGAAATGAATGGATTACGCAATCGGGTCAGGCATCGAACT          
JMSF023I11+           GTAATCCAGACGAAATGAATGGATTACGCAATCGGGTCAGGCATCGAACTGGATCATCTC
                      ____________________________________________________________
consensus             GTAATCCAGACGAAATGAATGGATTACGCAATCGGGTCAGGCATCGAACTGGATCATCTC