Contig 010704:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS093F04Sequence631010704 (4)ref|XP_009630382.1|2e-50PREDICTED: F-box protein At3g07870-like [Nicotiana tomentosiformis]
JMSF011O15Sequence212010704 (4)emb|CDP14709.1|1e-08unnamed protein product [Coffea canephora]734021402
JMSF023H23Sequence657010704 (4)ref|XP_009630382.1|8e-46PREDICTED: F-box protein At3g07870-like [Nicotiana tomentosiformis]782017148ref|XP_009780530.1|3e-44PREDICTED: F-box/kelch-repeat protein At3g06240-like [Nicotiana sylvestris]
JMSF046N15Sequence734010704 (4)ref|XP_009630382.1|2e-57PREDICTED: F-box protein At3g07870-like [Nicotiana tomentosiformis]764015162ref|XP_006366030.1|2e-34PREDICTED: F-box protein At3g07870-like [Solanum tuberosum]

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF046N15+ TTCCAATGTACTGCTCCATTA
                      ____________________________________________________________
consensus TTCCAATGTACTGCTCCATTA
 
. : . : . : . : . : . :
JMSF046N15+ ACAAAAACCTGAGTACAACTGTAATCGAAAATATCGTAGTTAACCCCAGTTGCTGTTATC
                      ____________________________________________________________
consensus ACAAAAACCTGAGTACAACTGTAATCGAAAATATCGTAGTTAACCCCAGTTGCTGTTATC
 
. : . : . : . : . : . :
JMSF046N15+ CTTTTCCACACCCCAGTGCTGAGAGAATAGATCTCAACCAAAGGTGGTGTGACTGGTCCT
                      ____________________________________________________________
consensus CTTTTCCACACCCCAGTGCTGAGAGAATAGATCTCAACCAAAGGTGGTGTGACTGGTCCT
 
. : . : . : . : . : . :
JMSF046N15+ ATATCCAAAGTAACACCTTTCCTTTCATACACAAGTCTCACCACCTTAAGATCATCATCA
JMFS093F04+ AACACCTTTTCTTTCATACACAACTCTCACCACCTTAAGATCATCATCA
JMSF023H23+ AACACCTTTTCTTTCATACACAACTCTCACCACCTTAAGATCATCATCA
                      ____________________________________________________________
consensus ATATCCAAAGTAACACCTTTTCTTTCATACACAACTCTCACCACCTTAAGATCATCATCA
 
. : . : . : . : . : . :
JMSF046N15+ CTTCGTGGACTAGCACCGAATCCAAGTACAAACCTAGATGGGTGAGCTGGCCTAATATAG
JMFS093F04+ CTTAGTGGACTAGCACCGAATCCAAGTACAAACCTAAATGGGTAAGCTGGCCTAATAGAG
JMSF023H23+ CTTAGTGGACTAGCACCGAATCCAAGTACAAACCTAAATGGGTAAGCTGGCCTAATAGAG
                      ____________________________________________________________
consensus CTTAGTGGACTAGCACCGAATCCAAGTACAAACCTAAATGGGTAAGCTGGCCTAATAGAG
 
. : . : . : . : . : . :
JMSF046N15+ TGATAAGGTAAGATCCTAGCCTGCCGAATACTGGGATTCCACAGGCGTACAGTAGCCATA
JMFS093F04+ GGACAAGGTAAGGCCCTAAGCTTCCGAATACTGGGATTCCACAGGGTTACAGTATGCCAA
JMSF023H23+ GGACAAGGTAAGGCCCTAAGCTTCCGAATACTGGGATTCCACAGGGTTACAGTATGCCAA
                      ____________________________________________________________
consensus GGACAAGGTAAGGCCCTAAGCTTCCGAATACTGGGATTCCACAGGGTTACAGTATGCCAA
 
. : . : . : . : . : . :
JMSF046N15+ TTATTAAAATAATCATCCGATAAACAAAGGACGCCGTTATAGAAGCCAACTGTATAAAAA
JMFS093F04+ TCACTAAAATAATCATCCGATAAACAAAAGACGCCGTTATAGAAACCAACTGTACGAAAA
JMSF023H23+ TCACTAAAATAATCATCCGATAAACAAAAGACGCCGTTATAGAAACCAACTGTACGAAAA
                      ____________________________________________________________
consensus TCACTAAAATAATCATCCGATAAACAAAAGACGCCGTTATAGAAACCAACTGTACGAAAA
 
. : . : . : . : . : . :
JMSF046N15+ TACCCGTTTCCGAATGAAACTGGGAGGTCGAGTTCGAAGGAATTATTGAGGGTGAGCAAT
JMFS093F04+ TACCCGATTCCGCATGAAATTGGGAAGCTGAGTTGGAAGGAATTATCGAGGGTGAGTAAT
JMSF023H23+ TACCCGATTCCGCATGAAATTGGGAAGCTGAGTTGGAAGGAATTATCGAGGGTGAGTAAT
                      ____________________________________________________________
consensus TACCCGATTCCGCATGAAATTGGGAAGCTGAGTTGGAAGGAATTATCGAGGGTGAGTAAT
 
. : . : . : . : . : . :
JMSF046N15+ TGGTGGTCAGTGTCGTTGAGTACGGAATATTTTTCCTCTATGTAGGATTTATCATAACGT
JMFS093F04+ TGGTGGTCAGTGTCGTCGAGTACGGAATATTTTTCCTCATTGTAGGATTTGTCATAACGT
JMSF023H23+ TGGTGGTCAGTGTCGTCGAGTACGGAATATTTTTCCTCATTGTAGGATTTGTCATAACGT
                      ____________________________________________________________
consensus TGGTGGTCAGTGTCGTCGAGTACGGAATATTTTTCCTCATTGTAGGATTTGTCATAACGT
 
. : . : . : . : . : . :
JMSF046N15+ CGGAGGAGGAGGAGGTTAGTGGCGGAGTTACCGTTCCTATGGTGGCGGCAATGGACGGAG
JMFS093F04+ CGGAGGAGGAGGAGATTAGTGGCGGAGTTACCGTTCCTATGGTGGCGGCGATGGGCGGAG
JMSF011O15+ CGGAG
JMSF023H23+ CGGAGGAGGAGGAGATTAGTGGCGGAGTTACCGTTCCTATGGTGGCGGCGATGGGCGGAG
                      ____________________________________________________________
consensus CGGAGGAGGAGGAGATTAGTGGCGGAGTTACCGTTCCTATGGTGGCGGCGATGGGCGGAG
 
. : . : . : . : . : . :
JMSF046N15+ ATGAAGGCGGGGCTGGTGATGAGGAAGTACCACGATTTGGAAACGGCGGTGAAGCGTACA
JMFS093F04+ ATGAAGGCGGGGCTGGTGATGATGAAGTACCACGATTTGGAAACGGCGGTGAAGCGTAGA
JMSF011O15+ ATGAAGGCGGGGCTGGTGATGAGGAAGTACCACGATTTGGAAACGGCGGTGAAGCGTACA
JMSF023H23+ ATGAAGGCGGGGCTGGTGATGATGAAGTACCACGATTTGGAAACGGCGGTGAAGCGTAGA
                      ____________________________________________________________
consensus ATGAAGGCGGGGCTGGTGATGATGAAGTACCACGATTTGGAAACGGCGGTGAAGCGTAGA
 
. : . : . : . : . : . :
JMSF046N15+ AGGGACTTCACTGGGAGCCTTTTGAGGATTTGGATCTGGAGTTCCTCCGGAAAATGGTGG
JMFS093F04+ AGGGACTTGACTGGGAGCCTTTTGAGGATTTCGATCAGGAGTTCCTCCGGAAAATGGTGG
JMSF011O15+ AGGGACTTCACTGGGAGCCTTTTGAGGATTTGGATCTGGAGTTCCTCCGGAAAATGGTGG
JMSF023H23+ AGGGACTTGACTGGGAGCCTTTTGAGGATTTCGATCAGGAGTTCCTCCGGAAAATGGTGG
                      ____________________________________________________________
consensus AGGGACTTGACTGGGAGCCTTTTGAGGATTTGGATCTGGAGTTCCTCCGGAAAATGGTGG
 
. : . : . : . : . : . :
JMSF046N15+ TGATCAGACATTGTTCAATTTGGAAATTTGAGTCTGCAACTTGTGAGCACGT
JMFS093F04+ TGATCAGACATTGTTCAATTTGGAAATTTGAGTCTGCAACTTGTGAGCACGT
JMSF011O15+ TGATCAGACATTGTTCAATTTGGAAATTTGAGTCTGCAACTTGTGAGCACGTAACCCTAA
JMSF023H23+ TGATCAGACATTGTTCAATTTGGAAATTTGAGTCTGCAACTTGTGAGCACGTAACCCTAA
                      ____________________________________________________________
consensus TGATCAGACATTGTTCAATTTGGAAATTTGAGTCTGCAACTTGTGAGCACGTAACCCTAA
 
. : . : . : . : . : . :
JMSF011O15+ C
JMSF023H23+ CTCTACCGTTAAGAAAGTCGAAGATGATAACCCGCGGACGGCAAGCCCAGAATGTAATCC
                      ____________________________________________________________
consensus CTCTACCGTTAAGAAAGTCGAAGATGATAACCCGCGGACGGCAAGCCCAGAATGTAATCC