| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFS093F04 | Sequence | 631 | 010704 (4) | ref|XP_009630382.1| | 2e-50 | PREDICTED: F-box protein At3g07870-like [Nicotiana tomentosiformis] | |||||
| JMSF011O15 | Sequence | 212 | 010704 (4) | emb|CDP14709.1| | 1e-08 | unnamed protein product [Coffea canephora] | 734 | 021402 | |||
| JMSF023H23 | Sequence | 657 | 010704 (4) | ref|XP_009630382.1| | 8e-46 | PREDICTED: F-box protein At3g07870-like [Nicotiana tomentosiformis] | 782 | 017148 | ref|XP_009780530.1| | 3e-44 | PREDICTED: F-box/kelch-repeat protein At3g06240-like [Nicotiana sylvestris] |
| JMSF046N15 | Sequence | 734 | 010704 (4) | ref|XP_009630382.1| | 2e-57 | PREDICTED: F-box protein At3g07870-like [Nicotiana tomentosiformis] | 764 | 015162 | ref|XP_006366030.1| | 2e-34 | PREDICTED: F-box protein At3g07870-like [Solanum tuberosum] |
This contig is upended
. : . : . : . : . : . :
JMSF046N15+ TTCCAATGTACTGCTCCATTA
____________________________________________________________
consensus TTCCAATGTACTGCTCCATTA
. : . : . : . : . : . :
JMSF046N15+ ACAAAAACCTGAGTACAACTGTAATCGAAAATATCGTAGTTAACCCCAGTTGCTGTTATC
____________________________________________________________
consensus ACAAAAACCTGAGTACAACTGTAATCGAAAATATCGTAGTTAACCCCAGTTGCTGTTATC
. : . : . : . : . : . :
JMSF046N15+ CTTTTCCACACCCCAGTGCTGAGAGAATAGATCTCAACCAAAGGTGGTGTGACTGGTCCT
____________________________________________________________
consensus CTTTTCCACACCCCAGTGCTGAGAGAATAGATCTCAACCAAAGGTGGTGTGACTGGTCCT
. : . : . : . : . : . :
JMSF046N15+ ATATCCAAAGTAACACCTTTCCTTTCATACACAAGTCTCACCACCTTAAGATCATCATCA
JMFS093F04+ AACACCTTTTCTTTCATACACAACTCTCACCACCTTAAGATCATCATCA
JMSF023H23+ AACACCTTTTCTTTCATACACAACTCTCACCACCTTAAGATCATCATCA
____________________________________________________________
consensus ATATCCAAAGTAACACCTTTTCTTTCATACACAACTCTCACCACCTTAAGATCATCATCA
. : . : . : . : . : . :
JMSF046N15+ CTTCGTGGACTAGCACCGAATCCAAGTACAAACCTAGATGGGTGAGCTGGCCTAATATAG
JMFS093F04+ CTTAGTGGACTAGCACCGAATCCAAGTACAAACCTAAATGGGTAAGCTGGCCTAATAGAG
JMSF023H23+ CTTAGTGGACTAGCACCGAATCCAAGTACAAACCTAAATGGGTAAGCTGGCCTAATAGAG
____________________________________________________________
consensus CTTAGTGGACTAGCACCGAATCCAAGTACAAACCTAAATGGGTAAGCTGGCCTAATAGAG
. : . : . : . : . : . :
JMSF046N15+ TGATAAGGTAAGATCCTAGCCTGCCGAATACTGGGATTCCACAGGCGTACAGTAGCCATA
JMFS093F04+ GGACAAGGTAAGGCCCTAAGCTTCCGAATACTGGGATTCCACAGGGTTACAGTATGCCAA
JMSF023H23+ GGACAAGGTAAGGCCCTAAGCTTCCGAATACTGGGATTCCACAGGGTTACAGTATGCCAA
____________________________________________________________
consensus GGACAAGGTAAGGCCCTAAGCTTCCGAATACTGGGATTCCACAGGGTTACAGTATGCCAA
. : . : . : . : . : . :
JMSF046N15+ TTATTAAAATAATCATCCGATAAACAAAGGACGCCGTTATAGAAGCCAACTGTATAAAAA
JMFS093F04+ TCACTAAAATAATCATCCGATAAACAAAAGACGCCGTTATAGAAACCAACTGTACGAAAA
JMSF023H23+ TCACTAAAATAATCATCCGATAAACAAAAGACGCCGTTATAGAAACCAACTGTACGAAAA
____________________________________________________________
consensus TCACTAAAATAATCATCCGATAAACAAAAGACGCCGTTATAGAAACCAACTGTACGAAAA
. : . : . : . : . : . :
JMSF046N15+ TACCCGTTTCCGAATGAAACTGGGAGGTCGAGTTCGAAGGAATTATTGAGGGTGAGCAAT
JMFS093F04+ TACCCGATTCCGCATGAAATTGGGAAGCTGAGTTGGAAGGAATTATCGAGGGTGAGTAAT
JMSF023H23+ TACCCGATTCCGCATGAAATTGGGAAGCTGAGTTGGAAGGAATTATCGAGGGTGAGTAAT
____________________________________________________________
consensus TACCCGATTCCGCATGAAATTGGGAAGCTGAGTTGGAAGGAATTATCGAGGGTGAGTAAT
. : . : . : . : . : . :
JMSF046N15+ TGGTGGTCAGTGTCGTTGAGTACGGAATATTTTTCCTCTATGTAGGATTTATCATAACGT
JMFS093F04+ TGGTGGTCAGTGTCGTCGAGTACGGAATATTTTTCCTCATTGTAGGATTTGTCATAACGT
JMSF023H23+ TGGTGGTCAGTGTCGTCGAGTACGGAATATTTTTCCTCATTGTAGGATTTGTCATAACGT
____________________________________________________________
consensus TGGTGGTCAGTGTCGTCGAGTACGGAATATTTTTCCTCATTGTAGGATTTGTCATAACGT
. : . : . : . : . : . :
JMSF046N15+ CGGAGGAGGAGGAGGTTAGTGGCGGAGTTACCGTTCCTATGGTGGCGGCAATGGACGGAG
JMFS093F04+ CGGAGGAGGAGGAGATTAGTGGCGGAGTTACCGTTCCTATGGTGGCGGCGATGGGCGGAG
JMSF011O15+ CGGAG
JMSF023H23+ CGGAGGAGGAGGAGATTAGTGGCGGAGTTACCGTTCCTATGGTGGCGGCGATGGGCGGAG
____________________________________________________________
consensus CGGAGGAGGAGGAGATTAGTGGCGGAGTTACCGTTCCTATGGTGGCGGCGATGGGCGGAG
. : . : . : . : . : . :
JMSF046N15+ ATGAAGGCGGGGCTGGTGATGAGGAAGTACCACGATTTGGAAACGGCGGTGAAGCGTACA
JMFS093F04+ ATGAAGGCGGGGCTGGTGATGATGAAGTACCACGATTTGGAAACGGCGGTGAAGCGTAGA
JMSF011O15+ ATGAAGGCGGGGCTGGTGATGAGGAAGTACCACGATTTGGAAACGGCGGTGAAGCGTACA
JMSF023H23+ ATGAAGGCGGGGCTGGTGATGATGAAGTACCACGATTTGGAAACGGCGGTGAAGCGTAGA
____________________________________________________________
consensus ATGAAGGCGGGGCTGGTGATGATGAAGTACCACGATTTGGAAACGGCGGTGAAGCGTAGA
. : . : . : . : . : . :
JMSF046N15+ AGGGACTTCACTGGGAGCCTTTTGAGGATTTGGATCTGGAGTTCCTCCGGAAAATGGTGG
JMFS093F04+ AGGGACTTGACTGGGAGCCTTTTGAGGATTTCGATCAGGAGTTCCTCCGGAAAATGGTGG
JMSF011O15+ AGGGACTTCACTGGGAGCCTTTTGAGGATTTGGATCTGGAGTTCCTCCGGAAAATGGTGG
JMSF023H23+ AGGGACTTGACTGGGAGCCTTTTGAGGATTTCGATCAGGAGTTCCTCCGGAAAATGGTGG
____________________________________________________________
consensus AGGGACTTGACTGGGAGCCTTTTGAGGATTTGGATCTGGAGTTCCTCCGGAAAATGGTGG
. : . : . : . : . : . :
JMSF046N15+ TGATCAGACATTGTTCAATTTGGAAATTTGAGTCTGCAACTTGTGAGCACGT
JMFS093F04+ TGATCAGACATTGTTCAATTTGGAAATTTGAGTCTGCAACTTGTGAGCACGT
JMSF011O15+ TGATCAGACATTGTTCAATTTGGAAATTTGAGTCTGCAACTTGTGAGCACGTAACCCTAA
JMSF023H23+ TGATCAGACATTGTTCAATTTGGAAATTTGAGTCTGCAACTTGTGAGCACGTAACCCTAA
____________________________________________________________
consensus TGATCAGACATTGTTCAATTTGGAAATTTGAGTCTGCAACTTGTGAGCACGTAACCCTAA
. : . : . : . : . : . :
JMSF011O15+ C
JMSF023H23+ CTCTACCGTTAAGAAAGTCGAAGATGATAACCCGCGGACGGCAAGCCCAGAATGTAATCC
____________________________________________________________
consensus CTCTACCGTTAAGAAAGTCGAAGATGATAACCCGCGGACGGCAAGCCCAGAATGTAATCC