| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF009G21 | Sequence | 553 | 010687 (5) | ref|XP_002285123.1| | 2e-17 | PREDICTED: yrdC domain-containing protein, mitochondrial isoform X1 [Vitis vini | 717 | 004394 (7) | ref|XP_009798167.1| | 1e-104 | PREDICTED: yrdC domain-containing protein, mitochondrial isoform X3 [Nicotiana |
| JMSF008F11 | Sequence | 350 | 010687 (5) | 752 | 004394 (7) | ref|XP_009798167.1| | 2e-112 | PREDICTED: yrdC domain-containing protein, mitochondrial isoform X3 [Nicotiana | |||
| JMSF021K18 | Sequence | 658 | 010687 (5) | ref|XP_009592140.1| | 1e-33 | PREDICTED: yrdC domain-containing protein, mitochondrial [Nicotiana tomentosifo | 748 | 004394 (7) | ref|XP_009798167.1| | 2e-122 | PREDICTED: yrdC domain-containing protein, mitochondrial isoform X3 [Nicotiana |
| JMSF022D14 | Sequence | 611 | 010687 (5) | ref|XP_009592140.1| | 3e-23 | PREDICTED: yrdC domain-containing protein, mitochondrial [Nicotiana tomentosifo | 771 | 004394 (7) | ref|XP_009798167.1| | 7e-125 | PREDICTED: yrdC domain-containing protein, mitochondrial isoform X3 [Nicotiana |
| JMSF023D14 | Sequence | 634 | 010687 (5) | ref|XP_009592140.1| | 1e-27 | PREDICTED: yrdC domain-containing protein, mitochondrial [Nicotiana tomentosifo | |||||
This contig is upended
. : . : . : . : . : . :
JMSF023D14+ AGGGGATTTGTATATTTACGACCTTTGATATCAT
JMSF021K18+ TCAACATCACCAACACAAATTGCCAGGGGATTTGTATATTTACGACCTTTGATATCAT
JMSF022D14+ TTTGATATCAT
____________________________________________________________
consensus TCAACATCACCAACACAAATTGCCAGGGGATTTGTATATTTACGACCTTTGATATCAT
. : . : . : . : . : . :
JMSF023D14+ ATATACGGTTAACGGCCTCAGCAGAACAAGCGTCACAAGCAAAGCCATAGAGCGTGTCGG
JMSF021K18+ ATATACGGTTAACGGCCTCAGCAGAACAAGCGTCACAAGCAAAGCCATAGAGCGTGTCGG
JMFF009G21+ CCTCAGCAGAACAAGCGTCACAAGCAAAGCCATAGAGCGTGTCGG
JMSF022D14+ ATATACGGTTAACGGCCTCAGCAGAACAAGCGTCACAAGCAAAGCCATAGAGCGTGTCGG
____________________________________________________________
consensus ATATACGGTTAACGGCCTCAGCAGAACAAGCGTCACAAGCAAAGCCATAGAGCGTGTCGG
. : . : . : . : . : . :
JMSF023D14+ TGGGGACAGCAATAACATTCCCAGACTTGATAGCTTCAATTGCAGCTTCAGCATAATCCT
JMSF021K18+ TGGGGACAGCAATAACATTCCCAGACTTGATAGCTTCAATTGCAGCTTCAGCATAATCCT
JMFF009G21+ TGGGGACAGCAATAACATTCCCAGACTTGATAGCTTCAATTGCAGCTTCAGCATAATCCT
JMSF022D14+ TGGGGACAGCAATAACATTCCCAGACTTGATAGCTTCAATTGCAGCTTCAGCATAATCCT
____________________________________________________________
consensus TGGGGACAGCAATAACATTCCCAGACTTGATAGCTTCAATTGCAGCTTCAGCATAATCCT
. : . : . : . : . : . :
JMSF023D14+ CTGTTGCTGGTTGCACCATTCCCATCCTATTAGTCTCCACTCTCAAATCCATCTTGGTTT
JMSF021K18+ CTGTTGCTGGTTGCACCATTCCCATCCTATTAGTCTCCACTCTCAAATCCATCTTGGTTT
JMFF009G21+ CTGTTGCTGGTTGCACCATTCCCATCCTATTAGTCTCCACTCTCAAATCCATCTTGGTTT
JMSF022D14+ CTGTTGCTGGTTGCACCATTCCCATCCTATTAGTCTCCACTCTCAAATCCATCTTGGTTT
____________________________________________________________
consensus CTGTTGCTGGTTGCACCATTCCCATCCTATTAGTCTCCACTCTCAAATCCATCTTGGTTT
. : . : . : . : . : . :
JMSF023D14+ TCACACTAACCCCAACCAAGCTCCTCCTCTTGCGCTGCCCCAATTTCACAAACCCAAACT
JMSF021K18+ TCACACTAACCCCAACCAAGCTCCTCCTCTTGCGCTGCCCCAATTTCACAAACCCAAACT
JMFF009G21+ TCACACTAACCCCAACCAAGCTCCTCCTCTTGCGCTGCCCCAATTTCACAAACCCAAACT
JMSF008F11+ TCACACTAACCCCAACCAAGCTCNTCCTCTTGCGCTGCCCCAATTTCACAAACCCAAACT
JMSF022D14+ TCACACTAACCCCAACCAAGCTCCTCCTCTTGCGCTGCCCCAATTTCACAAACCCAAACT
____________________________________________________________
consensus TCACACTAACCCCAACCAAGCTCCTCCTCTTGCGCTGCCCCAATTTCACAAACCCAAACT
. : . : . : . : . : . :
JMSF023D14+ TCCCAATCACCCCTGGGGAAGGGAGGATGAAGGGGCTGAAGAGGGGCAGCCACTGGGCAA
JMSF021K18+ TCCCAATCACCCCTGGGGAAGGGAGGATGAAGGGGCTGAAGAGGGGCAGCCACTGGGCAA
JMFF009G21+ TCCCAATCACCCCTGGGGAAGGGAGGATGAAGGGGCTGAAGAGGGGCAGCCACTGGGCAA
JMSF008F11+ TCCCAATCACCCCTGGGGAAGGGAGGATGAAGGGGCTGAAGAGGGGCAGCCACTGGGCAA
JMSF022D14+ TCCCAATCACCCCTGGGGAAGGGAGGATGAAGGGGCTGAAGAGGGGCAGCCACTGGGCAA
____________________________________________________________
consensus TCCCAATCACCCCTGGGGAAGGGAGGATGAAGGGGCTGAAGAGGGGCAGCCACTGGGCAA
. : . : . : . : . : . :
JMSF023D14+ TTCTTATGTTTTTAGGGGTGATGTACATCAGCAAACTNTGCTTTCTTCACAGTAGCCAGT
JMSF021K18+ TTCTTATGTTTTTAGGGGTGATGTACATCAGCAAACTCTGCTTTCTTCACAGTAGCCAGT
JMFF009G21+ TTCTTATGTTTTTAGGGGTGATGTACATCAGCAAACTCTGCTTTCTTC
JMSF008F11+ TTCTTATGTTTTTAGGGGTGATGTACATCAGCAAACTCTGCTTTCTTC
JMSF022D14+ TTCTTATGTTTTTAGGGGTGATGTACATCAGCAAACTCTGCTTTCTTCACAGTAGCCAGT
____________________________________________________________
consensus TTCTTATGTTTTTAGGGGTGATGTACATCAGCAAACTCTGCTTTCTTCACAGTAGCCAGT
. : . : . : . : . : . :
JMSF023D14+ AGCGAGAGAGGCCGGAGCTGGCCGCGCGCGGGGAGCAGGTCGCCGTCGGAGACTTGGAGT
JMSF021K18+ AGCGAGAGAGGCCGGAGCTGGCCGCGCGCGGGGAGCAGGTCGCCGTCGGAGACTTGGAGT
JMSF022D14+ AGCGAGAGAGGCCGGAGCTGGCCGCGCGCGGGGAGCAGGTCGCCGTCGGAGACTTGGAGT
____________________________________________________________
consensus AGCGAGAGAGGCCGGAGCTGGCCGCGCGCGGGGAGCAGGTCGCCGTCGGAGACTTGGAGT
. : . : . : . : . : . :
JMSF023D14+ TCGCAGTCGCAGCAGACCGGGAGAATTGGAGAAGGCCAAACCAAACTGGAGAACTGGAGT
JMSF021K18+ TCGCAGTCGCAGCAGACCGGGAGAATTGGAGAAGGCCAAACCAAACTGGAGAACTGGAGT
JMSF022D14+ TCGCAGTCGCAGCAGACCGGGAGAATTGGAGAAGGCCAAACCAAACTGGAGAACTGGAGT
____________________________________________________________
consensus TCGCAGTCGCAGCAGACCGGGAGAATTGGAGAAGGCCAAACCAAACTGGAGAACTGGAGT
. : . : . : . : . : . :
JMSF023D14+ TCGCAGTCGCTGGTNGGAGCCTCGGAGGTCGCCGGTCTTCCGTCTTCGNTTCGTGCCTTC
JMSF021K18+ TCGCAGTCGCTGGTCGGAGCCTCGGAGGTCGCCGGTCTTCCGTCTTCGCTTCGTGCCTTC
JMSF022D14+ TCGCAGTCGCTGGTCGGAGCCTCGGAGGTCGCCGGTCTTCCGTCTTCGCTTCGTGCCTTC
____________________________________________________________
consensus TCGCAGTCGCTGGTCGGAGCCTCGGAGGTCGCCGGTCTTCCGTCTTCGCTTCGTGCCTTC
. : . : . : . : . : . :
JMSF023D14+ GGCCTTCGCGTTCGCACTTCGCTGAGAGTAGTCGAGAAGAGAGCCAGACAGTGAGAGA
JMSF021K18+ GGCCTTCGCGTTCGCACTTCGCTGAGAGTAGTCGAGAAGAGAGCCAGACAGTGAGAGA
JMSF022D14+ GGCCTTCGCGTTCGCACTTCGCTGAGAGTAGTCGAGAAGAGAGCCAGACAGTGAGAGACC
____________________________________________________________
consensus GGCCTTCGCGTTCGCACTTCGCTGAGAGTAGTCGAGAAGAGAGCCAGACAGTGAGAGACC