Contig 010681:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF043B18Sequence628010681 (8)ref|XP_002270988.3|2e-66PREDICTED: probable threonine--tRNA ligase, cytoplasmic [Vitis vinifera]530001248 (8)gb|EYU43185.1|4e-72hypothetical protein MIMGU_mgv1a002431mg [Erythranthe guttata]
JMFF051C18Sequence555010681 (8)ref|XP_009795256.1|5e-48PREDICTED: probable threonine--tRNA ligase, cytoplasmic [Nicotiana sylvestris]614001248 (8)gb|EYU43185.1|1e-71hypothetical protein MIMGU_mgv1a002431mg [Erythranthe guttata]
JMFF051I16Sequence554010681 (8)ref|XP_009795256.1|3e-49PREDICTED: probable threonine--tRNA ligase, cytoplasmic [Nicotiana sylvestris]532001248 (8)gb|KDO58457.1|3e-56hypothetical protein CISIN_1g0468081mg, partial [Citrus sinensis]
JMFF051K16Sequence555010681 (8)ref|XP_009795256.1|1e-49PREDICTED: probable threonine--tRNA ligase, cytoplasmic [Nicotiana sylvestris]493001248 (8)gb|KDO58457.1|9e-54hypothetical protein CISIN_1g0468081mg, partial [Citrus sinensis]
JMSF002L24Sequence391010681 (8)ref|XP_010112806.1|3e-12Threonine--tRNA ligase [Morus notabilis] gb|EXC34921.1| Threonine--tRNA ligase [748001248 (8)gb|EYU43185.1|1e-141hypothetical protein MIMGU_mgv1a002431mg [Erythranthe guttata]
JMSF009C07Sequence285010681 (8)717001248 (8)ref|XP_009795256.1|3e-126PREDICTED: probable threonine--tRNA ligase, cytoplasmic [Nicotiana sylvestris]
JMSF021J21Sequence627010681 (8)emb|CAN65674.1|2e-63hypothetical protein VITISV_002009 [Vitis vinifera]764001248 (8)gb|EYU43185.1|2e-137hypothetical protein MIMGU_mgv1a002431mg [Erythranthe guttata]
JMSF021P20Sequence664010681 (8)ref|XP_002270988.3|1e-75PREDICTED: probable threonine--tRNA ligase, cytoplasmic [Vitis vinifera]720001248 (8)gb|KDO58457.1|2e-127hypothetical protein CISIN_1g0468081mg, partial [Citrus sinensis]

Alignment

This contig is upended


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JMSF021P20+                                                  ATATGATAGATGGTTATGGGA
                      ____________________________________________________________
consensus                                                    ATATGATAGATGGTTATGGGA
 
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JMFF043B18+                         ATCCAAAATCTCAATCTTGTAAGGTTCATTCACAGCCATAATTCTT
JMSF021P20+           TCCTCCTTGATACTATCCAAAATCTCAATCTTGTAAGGTTCATTCACAGCCATAATTCTT
JMSF021J21+                                            TAAGGTTCATTCACAGCCATAATTCTT
                      ____________________________________________________________
consensus             TCCTCCTTGATACTATCCAAAATCTCAATCTTGTAAGGTTCATTCACAGCCATAATTCTT
 
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JMFF043B18+           CTCTGAGCTTCATCTCCGCTGACTTCTTCCCTAATTAGGGGCAAATTTCTCCTGATGATA
JMSF021P20+           CTCTGAGCTTCATCTCTGCTGACTTCTTCCCTAATTAGGGGCAAATTTCTCCTGATGATA
JMFF051I16+                                            ATTAGGGGCAAATTTCTCCTGATGATA
JMFF051K16+                                           AATTAGGGGCAAATTTCTCCTGATGATA
JMFF051C18+                                           AATTAGGGGCAAATTTCTCCTGATGATA
JMSF021J21+           CTCTGAGCTTCATCTCTGCTGACTTCTTCCCTAATTAGGGGCAAATTTCTCCTGATGATA
                      ____________________________________________________________
consensus             CTCTGAGCTTCATCTCTGCTGACTTCTTCCCTAATTAGGGGCAAATTTCTCCTGATGATA
 
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JMFF043B18+           CGATCCATCTCCTGCTTAATCCTCTTGAGGTCCTTGTCAGTCAGAGGCTCCATATCAAAA
JMSF021P20+           CGATCCATCTCCTGCTTAATCCTCTTGAGGTCCTTGTCAGTCAGAGGCTCCATATCAAAA
JMFF051I16+           CGATCCATCTCCTGCTTAATCCTCTTGAGGTCCTTGTCAGTCAGAGGCTCCATATCAAAA
JMFF051K16+           CGATCCATCTCCTGCTTAATCCTCTTGAGGTCCTTGTCAGTCAGAGGCTCCATATCAAAA
JMFF051C18+           CGATCCATCTCCTGCTTAATCCTCTTGAGGTCCTTGTCAGTCAGAGGCTCCATATCAAAA
JMSF021J21+           CGATCCATCTCCTGCTTAATCCTCTTGAGGTCCTTGTCAGTCAGAGGCTCCATATCAAAA
                      ____________________________________________________________
consensus             CGATCCATCTCCTGCTTAATCCTCTTGAGGTCCTTGTCAGTCAGAGGCTCCATATCAAAA
 
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JMFF043B18+           TCATAGTAAAACCCATTCTCAATCCACGGCCCAATAGTTACTTTTGCATTTGGATAGATC
JMSF021P20+           TCATAGTAAAACCCATTCTCAATCCACGGCCCAATAGTTACTTTTGCATTTGGATAGATC
JMFF051I16+           TCATAGTAAAACCCATTCTCAATCCACGGCCCAATAGTTACTTTTGCATTTGGATAGATC
JMFF051K16+           TCATAGTAAAACCCATTCTCAATCCACGGCCCAATAGTTACTTTTGCATTTGGATAGATC
JMFF051C18+           TCATAGTAAAACCCATTCTCAATCCACGGCCCAATAGTTACTTTTGCATTTGGATAGATC
JMSF021J21+           TCATAGTAAAACCCATTCTCAATCCACGGCCCAATAGTTACTTTTGCATTTGGATAGATC
                      ____________________________________________________________
consensus             TCATAGTAAAACCCATTCTCAATCCACGGCCCAATAGTTACTTTTGCATTTGGATAGATC
 
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JMFF043B18+           TTTTGAACAGCCATGGCCATCACATGAGCACACGTGTGGCGGATTCTGAGGAGCCTCTCA
JMSF021P20+           TTTTGAACAGCCATGGCCATCACATGAGCACACGTGTGGCGGATTCTGAGGAGCCTCTCA
JMFF051I16+           TTTTGAACAGCCATGGCCATCACATGAGCACACGTGTGGCGGATTCTGAGGAGCCTCTCA
JMFF051K16+           TTTTGAACAGCCATGGCCATCACATGAGCACACGTGTGGCGGATTCTGAGGAGCCTCTCA
JMFF051C18+           TTTTGAACAGCCATGGCCAAGTCATGAGCACACGTGTGGCGGATTCTGAGGAGCCTCTCA
JMSF002L24+                            CATCACATGAGCACACGTGTGGCGGATTCTGAGGAGCCTCTCA
JMSF021J21+           TTTTGAACAGCCATGGCCATCACATGAGCACACGTGTGGCGGATTCTGAGGAGCCTCTCA
                      ____________________________________________________________
consensus             TTTTGAACAGCCATGGCCATCACATGAGCACACGTGTGGCGGATTCTGAGGAGCCTCTCA
 
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JMFF043B18+           GACGACTCATTAGTAGGGAGAACAACTCTCTCCTTCTGGGCGCTATTCTCATCAACATCA
JMSF021P20+           GACGACTCATTAGTAGGGAGAACAACTCTCTCCTTCTGGGCGCTATTCTCATCAACATCA
JMFF051I16+           GACGACTCATTAGTAGGGAGAACAACTCTCTCCTTCTGGGCGCTATTCTCATCAACATCA
JMFF051K16+           GACGACTCATTAGTAGGGAGAACAACTCTCTCCTTCTGGGCGCTATTCTCATCAACATCA
JMFF051C18+           GACGACTCATTAGTAGGGAGAACAACTCTCTCCTTCTGGGCGCTATTCTCATCAACATCA
JMSF002L24+           GACGAGTCATTAGTAGGGAGAACAACTCTCTCCTTCTGGGCGCTATTCTCATCAACATCA
JMSF009C07+                                                                      A
JMSF021J21+           GACGAGTCATTAGTAGGGAGAACAACTCTCTCCTTCTGGGCGCTATTCTCATCAACATCA
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consensus             GACGACTCATTAGTAGGGAGAACAACTCTCTCCTTCTGGGCGCTATTCTCATCAACATCA
 
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JMFF043B18+           TCAGCAAGAGGCTTCACTTGTGTGTCTGGAGAATCAGTGGCGACGGCGGAGGAAGCGGCG
JMSF021P20+           TCAGCAAGAGGCTTCACTTGTGTGTCTGGAGAATCAGTGGCGACGGCGGAGGAAGCGGCG
JMFF051I16+           TCAGCAAGAGGCTTCACTTGTGTGTCTGGAGAATCAGTGGCGACGGCGGAGGAAGCGGCG
JMFF051K16+           TCAGCAAGAGGCTTCACTTGTGTGTCTGGAGAATCAGTGGCGACGGCGGAGGAAGCGGCG
JMFF051C18+           TCAGCAAGAGGCTTCACTTGTGTGTCTGGAGAATCAGTGGCGACGGCGGAGGAAGCGGCG
JMSF002L24+           TCAGCAAGAGGCTTCACTTGTGTGTCTGGAGAATCAGTAGCGACGGCGGAGGAGGCGGCG
JMSF009C07+           TCAGCAAGAGGCTTCACTTGTGTGTCTGGAGAATCAGTGGCGACGGCGGAGGAAGCGGCG
JMSF021J21+           TCAGCAAGAGGCTTCACTTGTGTGTCTGGAGAATCAGTAGCGACGGCGGAGGAGGCGGCG
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consensus             TCAGCAAGAGGCTTCACTTGTGTGTCTGGAGAATCAGTGGCGACGGCGGAGGAAGCGGCG
 
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JMFF043B18+           GAGATGCACCTGAAACTGCTTCGCCTGGTGGCAGTGGAGCTGGAGGGGTGGAATACGAAT
JMSF021P20+           GAGATGCACCTGAAACTGCTTCGCCTGGTGGCAGTGGAGCTGGAGGGGTGGAATACGAAT
JMFF051I16+           GAGATGCACCTGAAACTGCTTCGCCTGGTGGCAGTGGAGCTGGAGGGGTGGAATACGAAT
JMFF051K16+           GAGATGCACCTGAAACTGCTTCGCCTGGTGGCAGTGGAGCTGGAGGGGTGGAATACGAAT
JMFF051C18+           GAGATGCACCTGAAACTGCTTCGCCTGGTGGCAGTGGAGCTGGAGGGGTGGAATACGAAT
JMSF002L24+           GAGATGCACCTGAAACTGCTTCGCCTGGTGGCAGTGGAGCTGGAGGGGTGGAATACGAAT
JMSF009C07+           GAGATGCACCTGAAACTGCTTCGCCTGGTGGCAGTGGAGCTGGAGGGGTGGAATACGAAT
JMSF021J21+           GAGATGCACCTGAAACTGCTTCGCCTGGTGGCAGTGGAGCTGGAGGGGTGGAATACGAAT
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consensus             GAGATGCACCTGAAACTGCTTCGCCTGGTGGCAGTGGAGCTGGAGGGGTGGAATACGAAT
 
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JMFF043B18+           AGGGCAGTGGGAAATTGGCGGCGTTTGGTGAGGGAAGAGAAAGTGGAATTGGAATTGGAA
JMSF021P20+           AGGGCAGTGGGAAATTGGCGGCGTTTGGTGAGGGAAGAGAAAGTGGAATTGGAATTGGAA
JMFF051I16+           AGGGCAGTGGGAAATTGGCGGCGTTTGGTGAGGGAAGAGAAAGTGGAATTGGAATTGGAA
JMFF051K16+           AGGGCAGTGGGAAATTGGCGGCGTTTGGTGAGGGAAGAGAAAGTGGAATTGGAATTGGAA
JMFF051C18+           AGGGCAGTGGGAAATTGGCGGCGTTTGGTGAGGGAAGAGAAAGTGGAATTGGAATTGGAA
JMSF002L24+           AGGGCAGTGGGAAATTGGCGGCGTTTGGTGAGGGAAGAGAAAGTGGAATTGGAATTGGAA
JMSF009C07+           AGGGCAGTGGGAAATTGGCGGCGTTTGGTGAGGGAAGAGAAAGTGGAATTGGAATTGGAA
JMSF021J21+           AGGGCAGTGGGAAATTGGCGGCGTTTGGTGAGGGAAGAGAAAGTGGAATTGGAATTGGAA
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consensus             AGGGCAGTGGGAAATTGGCGGCGTTTGGTGAGGGAAGAGAAAGTGGAATTGGAATTGGAA
 
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JMFF043B18+           TTGGGAGAAAGCGCGAAGAGAGAGCGGGAAGTGGGTAGCGATAAGGTGGCCATCCTTTGC
JMSF021P20+           TTGGGAGAAAGCGCGAAGAGAGAGCGGGAAGTGGGTAGCGATAAGGTGGCCATCCTTTGC
JMFF051I16+           TTGGGAGAAAGCGCGAAGAGAGAGCGGGAAGTGGGTAGCGATAAGGTGGCCATCCTTTGC
JMFF051K16+           TTGGGAGAAAGCGCGAAGAGAGAGCGGGAAGTGGGTAGCGATAAGGTGGCCATCCTTTGC
JMFF051C18+           TTGGGAGAAAGCGCGAAGAGAGAGCGGGAAGTGGGTAGCGATAAGGTGGCCATCCTTTGC
JMSF002L24+           TTGGGAGAAAGCGCGAAGAGAGAGCGGGAAGTGGGTAGCGATAAGGTGGCCATCCTTTGC
JMSF009C07+           TTGGGAGAAAGCGCGAAGAGAGAGCGGGAAGTGGGTAGCGATAAGGTGGCCATCCTTTGC
JMSF021J21+           TTGGGAGAAAGCGCGAAGAGAGAGCGGGAAGTGGGTAGCGATAAGGTGGCCATCCTTTGC
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consensus             TTGGGAGAAAGCGCGAAGAGAGAGCGGGAAGTGGGTAGCGATAAGGTGGCCATCCTTTGC
 
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JMFF043B18+           AGGATGGTGAGGTTCTTCATTGATCTTCTTCCTCGTCTCTAC                  
JMSF021P20+           AGGATGGTGAGGTTCTTCATTGATCTTCTTCCTCGTCTCTAC                  
JMFF051I16+           AGGATGGTGAGGTTCTTCATTGATCTTCTCCCTCGTCTCTACATTTC             
JMFF051K16+           AGGATGGTGAGGTTCTTCATTGATCTTCTCCCTCGTCTCTACATTTC             
JMFF051C18+           AGGATGGTGAGGTTCTTCATTGGTCTTCTCCCTCGTCTCTACATTTC             
JMSF002L24+           AGGATGGTTAGGTTCTTCATTGATCTTCTTCCTCGTCTCTACATTTC             
JMSF009C07+           AGGATGGTGAGGTTCTTCATTGATCTTCTTCCTCGTCTCTAC                  
JMSF021J21+           AGGATGGTTAGGTTCTTCATTGATCTTCTTCCTCGTCTCTACATTTCACTTCTGTGGTCC
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consensus             AGGATGGTGAGGTTCTTCATTGATCTTCTTCCTCGTCTCTACATTTCACTTCTGTGGTCC