Contig 010679:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF021H23Sequence679010679 (3)ref|XP_004233247.1|155PREDICTED: probable arabinosyltransferase ARAD1 [Solanum lycopersicum]
JMSF022H23Sequence669010679 (3)ref|XP_004233247.1|150PREDICTED: probable arabinosyltransferase ARAD1 [Solanum lycopersicum]
JMSF048L12Sequence643010679 (3)ref|XP_009772133.1|160PREDICTED: probable arabinosyltransferase ARAD1 [Nicotiana sylvestris]808011428 (8)emb|CDP11255.1|3e-116unnamed protein product [Coffea canephora]

Alignment

This contig is upended


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JMSF048L12+                   TCTCATCACTATACACAGGCCGATCCCCTGAGGGCGGCCGATTCACAGGATT
JMSF022H23+                                                                     TT
JMSF021H23+                                                    GCGGCCGATTCACAGGATT
                      ____________________________________________________________
consensus                     TCTCATCACTATACACAGGCCGATCCCCTGAGGGCGGCCGATTCACAGGATT
 
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JMSF048L12+           CACAACAAGGCTCAAAGACGAGAAAAAAGGCACGTAGAAGAGGTCAGCCTGATCGGGGTC
JMSF022H23+           CACAACAAGGCTCAAAGACGAGAAAAAAGGCACGTAGAAGAGGTCAGCCTGATCGGGGTC
JMSF021H23+           CACAACAAGGCTCAAAGACGAGAAAAAAGGCACGTAGAAGAGGTCAGCCTGATCGGGGTC
                      ____________________________________________________________
consensus             CACAACAAGGCTCAAAGACGAGAAAAAAGGCACGTAGAAGAGGTCAGCCTGATCGGGGTC
 
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JMSF048L12+           AGACACTGGAAGGACGGCCGACCCGGCCCGGCCACGATTGGGTAAGCGGAGGCTGGTGAA
JMSF022H23+           AGACACTGGAAGGACGGCCGACCCGGCCCGGCCACGATTGGGTAAGCGGAGGCTGGTGAA
JMSF021H23+           AGACACTGGAAGGACGGCCGACCCGGCCCGGCCACGATTGGGTAAGCGGAGGCTGGTGAA
                      ____________________________________________________________
consensus             AGACACTGGAAGGACGGCCGACCCGGCCCGGCCACGATTGGGTAAGCGGAGGCTGGTGAA
 
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JMSF048L12+           GAGGTGCCATTCGGCGGCATGCTGAGTGCCGGGGTACTTAAGCAATGCGTCGTCCTCTAC
JMSF022H23+           GAGGTGCCATTCGGCGGCATGCTGAGTGCCGGGGTACTTAAGCAATGCGTCGTCCTCTAC
JMSF021H23+           GAGGTGCCATTCGGCGGCATGCTGAGTGCCGGGGTACTTAAGCAATGCGTCGTCCTCTAC
                      ____________________________________________________________
consensus             GAGGTGCCATTCGGCGGCATGCTGAGTGCCGGGGTACTTAAGCAATGCGTCGTCCTCTAC
 
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JMSF048L12+           CCTCTCCCCTCCACGGGCCAAATTGTAGCTCTCGATCACCCCGTAGGTGAAATTCCTGGG
JMSF022H23+           CCTCTCCCCTCCACGGGCCAAATTGTAGCTCTCGATCACCCCGTAGGTGAAATTCCTGGG
JMSF021H23+           CCTCTCCCCTCCACGGGCCAAATTGTAGCTCTCGATCACCCCGTAGGTGAAATTCCTGGG
                      ____________________________________________________________
consensus             CCTCTCCCCTCCACGGGCCAAATTGTAGCTCTCGATCACCCCGTAGGTGAAATTCCTGGG
 
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JMSF048L12+           CAGATCGTACATATAAACCTTCACAGGCACTGGATGTTTCGCCCCGAAATACTCTGCGTT
JMSF022H23+           CAGATCGTACATATAAACCTTCACAGGCACTGGATGTTTCGCCCCGAAATACTCTGCGTT
JMSF021H23+           CAGATCGTACATATAAACCTTCACAGGCACTGGATGTTTCGCCCCGAAATACTCTGCGTT
                      ____________________________________________________________
consensus             CAGATCGTACATATAAACCTTCACAGGCACTGGATGTTTCGCCCCGAAATACTCTGCGTT
 
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JMSF048L12+           GCTTCCGAAATCAGCAAAGCCAATGGCATTGTTGATGGACAGAGGAGTAGAGAAGATGAA
JMSF022H23+           GCTTCCGAAATCAGCAAAGCCAATGGCATTGTTGATGGACAGAGGAGTAGAGAAGATGAA
JMSF021H23+           GCTTCCGAAATCAGCAAAGCCAATGGCATTGTTGATGGACAGAGGAGTAGAGAAGATGAA
                      ____________________________________________________________
consensus             GCTTCCGAAATCAGCAAAGCCAATGGCATTGTTGATGGACAGAGGAGTAGAGAAGATGAA
 
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JMSF048L12+           GGAATTGAGGAAGGCGTAGAGAGCTAAAAGTGAGATGAGAACAGCGAGGGTTAGGGTTGG
JMSF022H23+           GGAATTGAGGAAGGCGTAGAGAGCTAAAAGGGAGATGAGAACAGCGAGGGTTAGGGTTGG
JMSF021H23+           GGAATTGAGGAAGGCGTAGAGAGCTAAAAGGGAGATGAGAACAGCGAGGGTTAGGGTTGG
                      ____________________________________________________________
consensus             GGAATTGAGGAAGGCGTAGAGAGCTAAAAGGGAGATGAGAACAGCGAGGGTTAGGGTTGG
 
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JMSF048L12+           TTTGAGGATTGATCTCTTCGGCATTTTGGTGCTGGGAGTCATTGAGATTTTGAGGGAATC
JMSF022H23+           TTTGAGGATTGATCTCTTCGGCATTTTGGTGCTGGGAGTCATTGAGATTTTGAGTGAATC
JMSF021H23+           TTTGAGGATTGATCTCTTCGGCATTTTGGTGCTGGGAGTCATTGAGATTTTGAGTGAATC
                      ____________________________________________________________
consensus             TTTGAGGATTGATCTCTTCGGCATTTTGGTGCTGGGAGTCATTGAGATTTTGAGTGAATC
 
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JMSF048L12+           ATAGTTTGGAAACCCTGGGGAAGTTAGTTGCGGCGGCGATCGGAATTTTGCGCGATTTGA
JMSF022H23+           ATAGTTTGGAAACCCTGGGGAAGTTAGTTGCGGCGGCGATCGGAATTTTGCGCGATTTGA
JMSF021H23+           ATAGTTTGGAAACCCTGGGGAAGTTAGTTGCGGCGGCGATCGGAATTTTGCGCGATTTGA
                      ____________________________________________________________
consensus             ATAGTTTGGAAACCCTGGGGAAGTTAGTTGCGGCGGCGATCGGAATTTTGCGCGATTTGA
 
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JMSF048L12+           ATTCATTGAGTGATCGGAGACATCTGCGAGCGGTGGGAAAACTCAAAAC           
JMSF022H23+           ATTCATTGAGTGATCGGAGACATCTGCGAGCGGTGGGAAAACTCAAAACTGGACGTCTGG
JMSF021H23+           ATTCATTGAGTGATCGGAGACATCTGCGAGCGGTGGGAAAACTCAAAACTGGACGTCTGG
                      ____________________________________________________________
consensus             ATTCATTGAGTGATCGGAGACATCTGCGAGCGGTGGGAAAACTCAAAACTGGACGTCTGG
 
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JMSF022H23+           GCCCGAAGACATTCACTTCTATTGTACTATCGTTTTGTATTTTTCATAGTTAGTAGTGCC
JMSF021H23+           GCCCGAAGACATTCACTTCTATTGTACTATCGTTTTGTATTTTTCATAGTTAGTAGTGCC
                      ____________________________________________________________
consensus             GCCCGAAGACATTCACTTCTATTGTACTATCGTTTTGTATTTTTCATAGTTAGTAGTGCC