Contig 010670:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF006C17Sequence351010670 (3)ref|XP_010320138.1|3e-13PREDICTED: transcription factor TGA4-like isoform X1 [Solanum lycopersicum]
JMSF008E17Sequence452010670 (3)ref|XP_006360289.1|2e-19PREDICTED: transcription factor TGA7-like isoform X1 [Solanum tuberosum] ref|XP676002839 (3)ref|XP_009776929.1|4e-84PREDICTED: transcription factor TGA1-like [Nicotiana sylvestris] ref|XP_00977693
JMSF020E03Sequence672010670 (3)ref|XP_010320138.1|2e-41PREDICTED: transcription factor TGA4-like isoform X1 [Solanum lycopersicum]683002839 (3)ref|XP_009776929.1|4e-84PREDICTED: transcription factor TGA1-like [Nicotiana sylvestris] ref|XP_00977693

Alignment

This contig is upended


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JMSF020E03+                                                           CTATGTAGTCCC
                      ____________________________________________________________
consensus                                                             CTATGTAGTCCC
 
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JMSF020E03+           TGCTGTCTGGCTTTTTGGAGCTCCAATTCGAGTTGTGTTAGCTTCAAACGGCTTGTCTCT
                      ____________________________________________________________
consensus             TGCTGTCTGGCTTTTTGGAGCTCCAATTCGAGTTGTGTTAGCTTCAAACGGCTTGTCTCT
 
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JMSF020E03+           AACTGCTGAACATAAGCCTTTTTCCTTAAACGACTCTTCCTGGCAGCTTCGCGATTCTGC
                      ____________________________________________________________
consensus             AACTGCTGAACATAAGCCTTTTTCCTTAAACGACTCTTCCTGGCAGCTTCGCGATTCTGC
 
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JMSF008E17+                                                             CCCAGAGGCC
JMSF020E03+           GCCAGACGCCTTTGTACCTTGTCTGCAACGCCCTGTGTTGGTTGATTATCCCCAGAGGCC
                      ____________________________________________________________
consensus             GCCAGACGCCTTTGTACCTTGTCTGCAACGCCCTGTGTTGGTTGATTATCCCCAGAGGCC
 
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JMSF008E17+           GAGGGCGCTGCTGAGTCACTAGAAGTATACTCAGACTTATCATCTATCCCCGTGGTTGCC
JMSF006C17+                                                          CCCCGCGGTTGCC
JMSF020E03+           GAGGGCGCTGCTGAGTCACTAGAAGTATACTCAGACTTATCATCTATCCCCGCGGTTGCC
                      ____________________________________________________________
consensus             GAGGGCGCTGCTGAGTCACTAGAAGTATACTCAGACTTATCATCTATCCCCGCGGTTGCC
 
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JMSF008E17+           TGTGGAACCACACACGCACTCACCGCGGGGATGATATCACCTCGTAGCGTCTCCTCCCAC
JMSF006C17+           TGTGGAACCACACACGCACTCACCGCGGGGATGATATCACCTCGTAGCGTCTCCTCCCAC
JMSF020E03+           TGTGGAACCACACACGCACTCACCGCGGGGATGATATCACCTCGTAGCGTCTCCTCCCAC
                      ____________________________________________________________
consensus             TGTGGAACCACACACGCACTCACCGCGGGGATGATATCACCTCGTAGCGTCTCCTCCCAC
 
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JMSF008E17+           CCGCTCATCTGGTGGAAAGGCTCATACATGGCAGCCATGGCTCTTGTCGGGGCAAATTGA
JMSF006C17+           CCGCTCATCTGGTGGAAAGGCTCATACATGGCAGCCATGGCTCTTGTCGGGGCAAATTGA
JMSF020E03+           CCGCTCATCTGGTGGAAAGGCTCATACATGGCAGCCATGGCTCTTGTCGGGGCAAATTGA
                      ____________________________________________________________
consensus             CCGCTCATCTGGTGGAAAGGCTCATACATGGCAGCCATGGCTCTTGTCGGGGCAAATTGA
 
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JMSF008E17+           GTTGTGGCAGAACTCATGTTCATGGCCTGATATGAAACCATCTG                
JMSF006C17+           GTTGTGGCAGAACTCATGTTCATGGCCTGATATGAAACCATCTG                
JMSF020E03+           GTTGTGGCAGAACTCATGTTCATGGCCTGATATGAAACCATCTGCATCACAACATGCATA
                      ____________________________________________________________
consensus             GTTGTGGCAGAACTCATGTTCATGGCCTGATATGAAACCATCTGCATCACAACATGCATA
 
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JMSF020E03+           TATATCACCAAACCTTGATGAGTTCACAGAAACAACAGAACCAAGAAACACAGAAATTTC
                      ____________________________________________________________
consensus             TATATCACCAAACCTTGATGAGTTCACAGAAACAACAGAACCAAGAAACACAGAAATTTC
 
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JMSF020E03+           ATCAAAGAAACCTCGGGTTTCTGACAAGTTATATTCAAACTATGATCACTACAAACACCA
                      ____________________________________________________________
consensus             ATCAAAGAAACCTCGGGTTTCTGACAAGTTATATTCAAACTATGATCACTACAAACACCA
 
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JMSF020E03+           TAAACTTGGGATTCTACTCCAATTCACTATGCCAAGAATATTCTAACTTTTATGGAGATG
                      ____________________________________________________________
consensus             TAAACTTGGGATTCTACTCCAATTCACTATGCCAAGAATATTCTAACTTTTATGGAGATG
 
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JMSF020E03+           ACAACTTATGGTTTTTGTTTAAAGGGAATACCCATTAACAGGGAGAAAAATAGGTATCTC
                      ____________________________________________________________
consensus             ACAACTTATGGTTTTTGTTTAAAGGGAATACCCATTAACAGGGAGAAAAATAGGTATCTC