Contig 010665:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF016L22Sequence246010665 (2)726001346 (2)ref|XP_006355789.1|2e-43PREDICTED: putative E3 ubiquitin-protein ligase RF298-like isoform X3 [Solanum
JMSF019I23Sequence392010665 (2)ref|XP_006355787.1|1e-20PREDICTED: putative E3 ubiquitin-protein ligase RF298-like isoform X1 [Solanum 750001346 (2)ref|XP_006355789.1|1e-44PREDICTED: putative E3 ubiquitin-protein ligase RF298-like isoform X3 [Solanum

Alignment

This contig is upended


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JMSF019I23+                                       CAGACTGCAGGTCAAGTGATGCAAACTCATTT
                      ____________________________________________________________
consensus                                         CAGACTGCAGGTCAAGTGATGCAAACTCATTT
 
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JMSF019I23+           AGCGTGTTATGGAGCTTTTCCTCTAATAACTCGTATCTCGGGAATTCTGTCAGAGACGGA
                      ____________________________________________________________
consensus             AGCGTGTTATGGAGCTTTTCCTCTAATAACTCGTATCTCGGGAATTCTGTCAGAGACGGA
 
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JMSF019I23+           GCCGGTGAATCTACGGGAATGTCTAACGGGAATTCGGACAAAAACTTCCTCTTATTCCTA
                      ____________________________________________________________
consensus             GCCGGTGAATCTACGGGAATGTCTAACGGGAATTCGGACAAAAACTTCCTCTTATTCCTA
 
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JMSF019I23+           CTTCCGTTCTCTTGGGTTGAAACAGAAGATACCATCTCATTGCTACCATCATCACTGCCA
                      ____________________________________________________________
consensus             CTTCCGTTCTCTTGGGTTGAAACAGAAGATACCATCTCATTGCTACCATCATCACTGCCA
 
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JMSF016L22+                                                                     GA
JMSF019I23+           TCCATTTCTTTTTTGCTAACCATTTTGTTCGAACTTCCCCGACTACTCGATTCTTTGGGA
                      ____________________________________________________________
consensus             TCCATTTCTTTTTTGCTAACCATTTTGTTCGAACTTCCCCGACTACTCGATTCTTTGGGA
 
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JMSF016L22+           AATGCACAAAATCGGCAAGGTGAAGTCTCCCCGGTTCTTGAGGTGCCTTATAGGCTATGG
JMSF019I23+           AATGCACAAAATCGGCAAGGTGAAGTCTCCCCGGTTCTTGAGGTGCCTTATAGGCTATGG
                      ____________________________________________________________
consensus             AATGCACAAAATCGGCAAGGTGAAGTCTCCCCGGTTCTTGAGGTGCCTTATAGGCTATGG
 
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JMSF016L22+           CGCCACTGTTCTTCGAGCTCTTTCGCCCTCGCCTCTGCTCGCCTGAGTGTTCGTTCC   
JMSF019I23+           CGCCACTGTTCTTCGAGCTCTTTCGCCCTCGCCTCTGCTCGCCTGAGTGTTCGTTCCACC
                      ____________________________________________________________
consensus             CGCCACTGTTCTTCGAGCTCTTTCGCCCTCGCCTCTGCTCGCCTGAGTGTTCGTTCCACC