| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF004A07 | Sequence | 313 | 010657 (8) | 761 | 010657 (8) | emb|CDP02682.1| | 3e-68 | unnamed protein product [Coffea canephora] | |||
| JMSF006K22 | Sequence | 322 | 010657 (8) | ref|XP_010683052.1| | 4e-10 | PREDICTED: uncharacterized protein At4g37920, chloroplastic [Beta vulgaris subs | 412 | 010657 (8) | emb|CDP02682.1| | 1e-45 | unnamed protein product [Coffea canephora] |
| JMSF018C07 | Sequence | 389 | 010657 (8) | ref|XP_009606296.1| | 4e-25 | PREDICTED: uncharacterized protein At4g37920, chloroplastic [Nicotiana tomentos | 750 | 010657 (8) | ref|XP_009606296.1| | 1e-135 | PREDICTED: uncharacterized protein At4g37920, chloroplastic [Nicotiana tomentos |
| JMSF048N23 | Sequence | 678 | 010657 (8) | ref|XP_009606296.1| | 1e-80 | PREDICTED: uncharacterized protein At4g37920, chloroplastic [Nicotiana tomentos | 738 | 010657 (8) | ref|XP_009606296.1| | 7e-103 | PREDICTED: uncharacterized protein At4g37920, chloroplastic [Nicotiana tomentos |
This contig is upended
. : . : . : . : . : . :
rJMSF048N23- TTTCCATAATGATCATTCA
rJMFF004A07- ACTTGTGGGTTTGATATTTCCATAATGATCATTCA
____________________________________________________________
consensus ACTTGTGGGTTTGATATTTCCATAATGATCATTCA
. : . : . : . : . : . :
rJMSF048N23- TCAACTGTACAAAAGGGCTAGACTGGGTCTGGGTATACTAAGCCTGCATATGGAGGGACA
rJMSF006K22- GGGCTAGACTGGGTCTGGGTATACNAAGCCTGCATATGGAGGGACA
rJMFF004A07- TCAACTGTACAAAAGGGCTAGACTGGGTCTGGGTATACTAAGCCTGCATATGGAGGGACA
____________________________________________________________
consensus TCAACTGTACAAAAGGGCTAGACTGGGTCTGGGTATACTAAGCCTGCATATGGAGGGACA
. : . : . : . : . : . :
rJMSF048N23- TAGGCAAATCATTTGTCTAGACATCAAGGGCAAAGTAGTCATCTTTGATACTACTAGTTG
rJMSF006K22- TAGGCAAATCANTTGNCTAGANATCNAGGGCAAAGTAGNCATCTTTGATACTACTAGTTG
rJMFF004A07- TAGGCAAATCATTTGTCTAGACATCAAGGGCAAAGTAGTCATCTTTGATACTACTAGTTG
____________________________________________________________
consensus TAGGCAAATCATTTGTCTAGACATCAAGGGCAAAGTAGTCATCTTTGATACTACTAGTTG
. : . : . : . : . : . :
rJMSF048N23- TACCTCACAACTCTTCTGATTTCGGGTCTTTTTCTGCATTAACTTGTTGCTCCAAGTATT
rJMSF006K22- TACCTCACAACTCTTCTGATTTCGGGTCTTTTTCTGCATTAACTTGNTGCTCCAAGTATT
rJMFF004A07- TACCTCACAACTCTTCTGATTTCGGGTCTTTTTCTGCATTAACTTGTTGCTCCAAGTATT
rJMSF018C07- CCTCACAACTCTTCTGATTTCGGGTCTTTTTCTGCATTAACTTGTTGCTCCAAGTATT
____________________________________________________________
consensus TACCTCACAACTCTTCTGATTTCGGGTCTTTTTCTGCATTAACTTGTTGCTCCAAGTATT
. : . : . : . : . : . :
rJMSF048N23- CCTCTTCAATGACTTCCTTAAGGATGCAAAGCCTCTGGATAACAACAGGTTGGTTCATCT
rJMSF006K22- CCTCTTCAATGACTTCCTTAAGGATGCAAAGCCTCTGGATAACAACANGTTGGTTCATCT
rJMFF004A07- CCTCTTCAATGACTTCCTTAAGGATGCAAAGCCTCTGGATAACAACAGGTTGGTTCATCT
rJMSF018C07- CCTCTTCAATGACTTCCTTAAGGATGCAAAGCCTCTGGATAACAACAGGTTGGTTCATCT
____________________________________________________________
consensus CCTCTTCAATGACTTCCTTAAGGATGCAAAGCCTCTGGATAACAACAGGTTGGTTCATCT
. : . : . : . : . : . :
rJMSF048N23- GTTTTGCTTCCCTAATTTCAGTTTCTTCTTGGTTGAGGTGGTATGCATCTAACATGATTT
rJMSF006K22- GTTTTGCTTCCCTAATTTCANTTTCTTCTTGGTTGAGGTGGTATGCATCTAACATGATTT
rJMFF004A07- GTTTTGCTTCCCTAATTTCAGTTTCTTCTTGGTTGAGGTGGTATGCATCTAACATGATTT
rJMSF018C07- GTTTTGCTTCCCTAATTTCAGTTTCTTCTTGGTTGAGGTGGTATGCATCTAACATGATTT
____________________________________________________________
consensus GTTTTGCTTCCCTAATTTCAGTTTCTTCTTGGTTGAGGTGGTATGCATCTAACATGATTT
. : . : . : . : . : . :
rJMSF048N23- TTATCCATTTATGTAGCTCCTTGGGAGTTGTGTATATAGCACTTGGGTCTTTAGCTCCAT
rJMSF006K22- TTATCCATTTATGTAGCTCCTTGGGAGTTGTGTATATAGCACTTGGGTCTTTAGCTCCAT
rJMFF004A07- TTATCCATTTATGTAGCTCCTTGGGAGTTGTGTATATAGCACTTGGGTCTTTAGCTCCAT
rJMSF018C07- TTATCCATTTATGTAGCTCCTTGGGAGTTGTGTATATAGCACTTGGGTCTTTAGCTCCAT
____________________________________________________________
consensus TTATCCATTTATGTAGCTCCTTGGGAGTTGTGTATATAGCACTTGGGTCTTTAGCTCCAT
. : . : . : . : . : . :
rJMSF048N23- GTTCATCACCAGGACTAAAAGCTGTAGCCAATGCAGAGAATCTTTCCTCGGGATCTATAA
rJMSF006K22- GTTCATCACCAGGACTAAAAGCTGTAGCCAATGCAGAGAATCTTTCCTCGGGATCTATAA
rJMFF004A07- GTTCATCACCAGGACTAAAAGCTGTAGCCAATGCAGAGAATCTTTCCTCGGGATCTATAA
rJMSF018C07- GTTCATCACCAGGACTAAAAGCTGTAGCCAATGCAGAGAATCTTTCCTCGGGATCTATAA
____________________________________________________________
consensus GTTCATCACCAGGACTAAAAGCTGTAGCCAATGCAGAGAATCTTTCCTCGGGATCTATAA
. : . : . : . : . : . :
rJMSF048N23- TGTTAAGCAAATACTTAAGTAGTTTTATTTCTTTTGGTGCCATACTCCTCAGACTACTCT
rJMSF006K22- TGTTAA
rJMFF004A07- TGTTAAGCAAATACTTAAGTAGTTTTATTTCTTTTGGTGCCATACTCCTCAGACTACTCT
rJMSF018C07- TGTTAAGCAAATACTTAAGTAGTTTTATTTCTTTTGGTGCCATACTCCTCAGACTACTCT
____________________________________________________________
consensus TGTTAAGCAAATACTTAAGTAGTTTTATTTCTTTTGGTGCCATACTCCTCAGACTACTCT
. : . : . : . : . : . :
rJMSF048N23- GAGTGGTCTTGTACAGGTGATACATTATGTCTTTTACCT
rJMFF004A07- GAGTGGTCTTGTACAGGTGATACATTATGTCTTTTACCT
rJMSF018C07- GAGTGGTCTTGTACAGGTGATACATTATGTCTTTTACCTCATTTCTCATGGTGGTGGAGT
____________________________________________________________
consensus GAGTGGTCTTGTACAGGTGATACATTATGTCTTTTACCTCATTTCTCATGGTGGTGGAGT
. : . : . : . : . : . :
rJMSF018C07- CTTTAGCCGCCGCCCAAGCACCGTTTATCAATAGAATCAATGAAGAGTCAAGTTCTTTTG
____________________________________________________________
consensus CTTTAGCCGCCGCCCAAGCACCGTTTATCAATAGAATCAATGAAGAGTCAAGTTCTTTTG
. : . : . : . : . : . :
rJMSF018C07- TCTTGGCAAGGCTTTGAATCTTCTCACATGCTGCATCAAGTGAAGGAGAGTTTAGGATGT
____________________________________________________________
consensus TCTTGGCAAGGCTTTGAATCTTCTCACATGCTGCATCAAGTGAAGGAGAGTTTAGGATGT
. : . : . : . : . : . :
rJMSF018C07- CATCAAATTTTTGCTGGGCCGTGTCTAGTGTCTCCACAATCTCCAGTGTGTTATCATGAG
JMSF048N23+ TCTCCAGTGTGTTATCATGAG
____________________________________________________________
consensus CATCAAATTTTTGCTGGGCCGTGTCTAGTGTCTCCACAATCTCCAGTGTGTTATCATGAG
. : . : . : . : . : . :
rJMSF018C07- CACTCACTGCAGTTAGGCATCTTGCTCCAAGTCTGGCCATAGCATCTCGGTCCTCCAAGC
JMSF048N23+ CACTCACTGCAGTTAGGCATCTTGCTCCAAGTCTGGCCATAGCATCTCGGTCCTCCAAGC
____________________________________________________________
consensus CACTCACTGCAGTTAGGCATCTTGCTCCAAGTCTGGCCATAGCATCTCGGTCCTCCAAGC
. : . : . : . : . : . :
rJMSF018C07- TATCATAAGTTTCTGACAACAAAGTCAGATAACGAAAGAA
JMSF048N23+ TATCATAAGTTTCTGACAACAAAGTCAGATAACGAAAGAATTCACCAGTGAAGTCTTTGC
____________________________________________________________
consensus TATCATAAGTTTCTGACAACAAAGTCAGATAACGAAAGAATTCACCAGTGAAGTCTTTGC
. : . : . : . : . : . :
JMSF048N23+ GCCTCTTGGTAACGATGGCATTAACATCCCTAGGACTATCCTGTATCTCTTTGAGAAGGT
____________________________________________________________
consensus GCCTCTTGGTAACGATGGCATTAACATCCCTAGGACTATCCTGTATCTCTTTGAGAAGGT
. : . : . : . : . : . :
JMSF048N23+ CCTCGTGCCTCTCCATTTCATCATCAATCTTCTTAACTTTTCTTGCTAAACTAGTATATT
____________________________________________________________
consensus CCTCGTGCCTCTCCATTTCATCATCAATCTTCTTAACTTTTCTTGCTAAACTAGTATATT
. : . : . : . : . : . :
JMSF048N23+ TTTCTTTGATTGCAGGGTCATTTTGTTGGGCATCAGCTCGGGTTTGACACCGGGTGTAAA
JMSF018C07+ ATCAGCTCGGGTTTGACACCGGGTGTAAA
____________________________________________________________
consensus TTTCTTTGATTGCAGGGTCATTTTGTTGGGCATCAGCTCGGGTTTGACACCGGGTGTAAA
. : . : . : . : . : . :
JMSF006K22+ ACCAAGTACTTCTTCCAATCCTTGG
JMSF048N23+ ACCTACCCCTGTACTTTTTCCACTCTTCACGAAACACCAAGTACTTCTTCCAATCCTTGG
JMSF018C07+ ACCTACCCCTGTACTTTTTCCACTCTTCACGAAACACCAAGTACTTCTTCCAATCCTTGG
____________________________________________________________
consensus ACCTACCCCTGTACTTTTTCCACTCTTCACGAAACACCAAGTACTTCTTCCAATCCTTGG
. : . : . : . : . : . :
JMSF006K22+ GCTTGGGTTTCTCAGTCAAGAACATGTCAATAACCTTGTCGCAAAATTGGGTCATTGTGT
JMSF048N23+ GCTTGGGTTTCTCAGTCAAGAACATGTCAATAACCTTGTCGCAAAATTGGGTCATTGTGT
JMSF018C07+ GCTTGGGTTTCTCAGTCAAGAACATGTCAATAACCTTGTCGCAAAATTGGGTCATTGTGT
____________________________________________________________
consensus GCTTGGGTTTCTCAGTCAAGAACATGTCAATAACCTTGTCGCAAAATTGGGTCATTGTGT
. : . : . : . : . : . :
JMSF006K22+ AGCCATCTGCAATTTCAACCTCAACTTGTTGCTCCTCTACTGGTACAGCAGAAACACTGG
JMSF048N23+ AGCCATCTGCAATTTCAACCTCAACTTGTTGCTCCTCTACTGGTACAGCAGAAACACTGG
JMSF018C07+ AGCCATCTGCAATTTCAACCTCAACTTGTTGCTCCTCTACTGGTACAGCAGAAACACTGG
____________________________________________________________
consensus AGCCATCTGCAATTTCAACCTCAACTTGTTGCTCCTCTACTGGTACAGCAGAAACACTGG
. : . : . : . : . : . :
JMSF006K22+ TGGCCAAAATCTTGGTTGCGGAGATGGTGGGTGATGTTGTTGTAGGTTTCGATGGGGATA
JMFF004A07+ TGGTTGCGGAGATGGTGGGTGATGTTGTTGTAGGTTTCGATGGGGATA
JMSF048N23+ TGGCCAAAATCTTGGTTGCGGAGATGGTGGGTGATGTTGTTGTAGGTTTCGATGGGGATA
JMSF018C07+ TGGCCAAAATCTTGGTTGCGGAGATGGTGGGTGATGTTGTTGTAGGTTTCGATGGGGATA
____________________________________________________________
consensus TGGCCAAAATCTTGGTTGCGGAGATGGTGGGTGATGTTGTTGTAGGTTTCGATGGGGATA
. : . : . : . : . : . :
JMSF006K22+ TGGTTGAAATTTTGGGGGAAGATTTTGGTATTTCTGCGTTGAATGGAAAGATAATAGTGG
JMFF004A07+ TGGTTGAAATTTTGGGGGAAGATTTTGGTATTTCTGCGTTGAATGGAAAGATAATAGTGG
JMSF048N23+ TGGTTGAAATTTTGGGGGAAGATTTTGGTATTTCTGCGTTGAATGGAAAGATAATAGTGG
JMSF018C07+ TGGTTGAAATTTTGGGGGAAGATTTTGGTATTTCTGCGTTGAATGGAAAGATAATAGTGG
____________________________________________________________
consensus TGGTTGAAATTTTGGGGGAAGATTTTGGTATTTCTGCGTTGAATGGAAAGATAATAGTGG
. : . : . : . : . : . :
JMSF006K22+ ATATTGAGGTCTTCAATCCTATGAGGTTGCTCATGGCTGCGTTCAGAGTGGAATCC
JMFF004A07+ ATATTGAGGTCTTCAATCCTATGAGGTTGCTCATGGCTGCGTTCAGAGTGGAATCC
JMSF048N23+ ATATTGAGGTCTTCAATCCTATGAGGTTGCTCATGGCTGCGTTCAGAGTGGAATCC
JMSF018C07+ ATATTGAGGTCTTCAATCCTATGAGGTTGCTAATGGCTGCGTTCAGAGTGGAATCCAATC
____________________________________________________________
consensus ATATTGAGGTCTTCAATCCTATGAGGTTGCTCATGGCTGCGTTCAGAGTGGAATCCAATC