Contig 010650:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF017C23Sequence228010650 (2)802012575 (2)ref|XP_006354348.1|1e-88PREDICTED: probable receptor-like protein kinase At5g15080-like isoform X5 [Sol
JMSF024E08Sequence664010650 (2)ref|XP_009764510.1|3e-61PREDICTED: probable receptor-like protein kinase At5g47070 isoform X1 [Nicotian794012575 (2)ref|XP_006354348.1|2e-87PREDICTED: probable receptor-like protein kinase At5g15080-like isoform X5 [Sol

Alignment

This contig is upended


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JMSF024E08+                                                            CTTCTGCACAA
                      ____________________________________________________________
consensus                                                              CTTCTGCACAA
 
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JMSF024E08+           TATCCAATTAATTTGACAAGGTTCTCGTGTTCAGCCACACCAAGTACATTCACTTCTGAC
                      ____________________________________________________________
consensus             TATCCAATTAATTTGACAAGGTTCTCGTGTTCAGCCACACCAAGTACATTCACTTCTGAC
 
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JMSF024E08+           ATCCATTCTTTGTGCCCCTGTATTCCTCTTCTGCTAAGTTGTTTTATGGCCACATCAACC
                      ____________________________________________________________
consensus             ATCCATTCTTTGTGCCCCTGTATTCCTCTTCTGCTAAGTTGTTTTATGGCCACATCAACC
 
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JMSF024E08+           CTTTTAGTGGGATCTTCAGAATTCTTAATTGTTCCCTTATACACCGGTCCAAATCCTCCC
                      ____________________________________________________________
consensus             CTTTTAGTGGGATCTTCAGAATTCTTAATTGTTCCCTTATACACCGGTCCAAATCCTCCC
 
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JMSF024E08+           TCCCCGATCTTGGTTGAGTGGTTAAAATTTTTCGTTGCAGTTTTGAGTTCTGAGAATGCA
                      ____________________________________________________________
consensus             TCCCCGATCTTGGTTGAGTGGTTAAAATTTTTCGTTGCAGTTTTGAGTTCTGAGAATGCA
 
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JMSF024E08+           AAGACCCTGAGATTAGAAGGCCTCTCAGACAAATTCGGGAACTGCGTTCTTCCTCTGGAC
                      ____________________________________________________________
consensus             AAGACCCTGAGATTAGAAGGCCTCTCAGACAAATTCGGGAACTGCGTTCTTCCTCTGGAC
 
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JMSF024E08+           TCCGTACTAGCATCTGATGCAGTCTTAGAATTATACTCAAGACTGGACGGCCGCAGTTCA
                      ____________________________________________________________
consensus             TCCGTACTAGCATCTGATGCAGTCTTAGAATTATACTCAAGACTGGACGGCCGCAGTTCA
 
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JMSF024E08+           GGATCAGAAGAGCCAGATAAGGAGGAGAGGGCCGAATTTGAGTTCACTGTATTCAGTTCT
                      ____________________________________________________________
consensus             GGATCAGAAGAGCCAGATAAGGAGGAGAGGGCCGAATTTGAGTTCACTGTATTCAGTTCT
 
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JMSF024E08+           TCTTCCTTCTTTTGAGCATTGAAGAATAGGGCGAAACACTTCATGGTCTTCAAATTAAAG
JMSF017C23+                       TGAGCATTGAAGAATAGGGCGAAACACTTCATGGTCTTCAAATTAAAG
                      ____________________________________________________________
consensus             TCTTCCTTCTTTTGAGCATTGAAGAATAGGGCGAAACACTTCATGGTCTTCAAATTAAAG
 
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JMSF024E08+           AAGTACAATACCCTCAGCTCGCTGCAGAATGCAGATTCTCTGGGGCAGCCTGAATTCACA
JMSF017C23+           AAGTACAATACCCTCAGCTCGCTGCAGAATGCAGATTCTCTGGGGCAGCCTGAATTCACA
                      ____________________________________________________________
consensus             AAGTACAATACCCTCAGCTCGCTGCAGAATGCAGATTCTCTGGGGCAGCCTGAATTCACA
 
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JMSF024E08+           ACAATGTCACTAAAGATTCAATCTTTGACAAAAACCCAGAAGACCAAGAACTCCCACAAG
JMSF017C23+           ACAATGTCACTAAAGATTCAATCTTTGACAAAAACCCAGAAGACCAAGAACTCCCACAAG
                      ____________________________________________________________
consensus             ACAATGTCACTAAAGATTCAATCTTTGACAAAAACCCAGAAGACCAAGAACTCCCACAAG
 
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JMSF024E08+           CAGCCAGACCGGCAAAAGAAGAAGAAAACGTTGGATGACCAAAAGAGGCCC         
JMSF017C23+           CAGCCAGACCGGCAAAAGAAGAAGAAAACGTTGGATGACCAAAAGAGGCCCGGAGTCTTC
                      ____________________________________________________________
consensus             CAGCCAGACCGGCAAAAGAAGAAGAAAACGTTGGATGACCAAAAGAGGCCCGGAGTCTTC