| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF016E16 | Sequence | 539 | 010646 (4) | gb|AAV88074.1| | 2e-41 | sucrose transporter-like protein [Ipomoea batatas] | 744 | 000337 (5) | gb|EYU28727.1| | 1e-77 | hypothetical protein MIMGU_mgv1a006020mg [Erythranthe guttata] |
| JMFF024L17 | Sequence | 547 | 010646 (4) | gb|AAV88074.1| | 1e-40 | sucrose transporter-like protein [Ipomoea batatas] | 231 | 000337 (5) | |||
| JMFF046N22 | Sequence | 475 | 010646 (4) | gb|AAV88074.1| | 2e-42 | sucrose transporter-like protein [Ipomoea batatas] | 395 | 000337 (5) | |||
| JMSF016P16 | Sequence | 460 | 010646 (4) | gb|AAV88074.1| | 4e-19 | sucrose transporter-like protein [Ipomoea batatas] | 781 | 000337 (5) | ref|XP_010256873.1| | 6e-74 | PREDICTED: sucrose transport protein SUC3 isoform X3 [Nelumbo nucifera] |
This contig is upended
. : . : . : . : . : . :
JMFF046N22+ TGTAATCGGACCGCATAG
JMFF016E16+ TAG
JMFF024L17+ TAG
____________________________________________________________
consensus TGTAATCGGACCGCATAG
. : . : . : . : . : . :
JMFF046N22+ CCAAATAAATGAAGAAAAAGCGTGTGGTATTCCAAGAGTCTGAATATAAGGAGTGAGGAG
JMFF016E16+ CCAAATAAATGAAGAAAAAGCGTGTGGTATTCCAAGAGTCTGAATATAAGGAGTGAGGAG
JMFF024L17+ CCAAATAAATGAAGAAAAAGCGTGTGGTATTCCAAGAGTCTGAATATAAGGAGTGAGGAG
____________________________________________________________
consensus CCAAATAAATGAAGAAAAAGCGTGTGGTATTCCAAGAGTCTGAATATAAGGAGTGAGGAG
. : . : . : . : . : . :
JMFF046N22+ AGAGAGTTGCAATGCCCAGCCAAACTGGACGCCGGCGGCGACCGTACAACTGAGGATCAA
JMFF016E16+ AGAGAGTTGCAATGCCCAGCCAAACTGGACGCCGGCGGCGACCGTACAACTGAGGATCAA
JMFF024L17+ AGAGAGTTGCAATGCCCAGCCAAANTGGACGCCGGCGGCGACCGTACAACTGAGGATCAA
____________________________________________________________
consensus AGAGAGTTGCAATGCCCAGCCAAACTGGACGCCGGCGGCGACCGTACAACTGAGGATCAA
. : . : . : . : . : . :
JMFF046N22+ GGTGAGCAGGCTGATCTGAACAGGCGACTGATGGTGACTAGAATCCGTGGAGTCGCCATT
JMFF016E16+ GGTGAGCAGGCTGATCTGAACAGGCGNCTGATGGTGACTAGAATCCGTGGAGTCGCCATT
JMFF024L17+ GGTGAGCAGGCTGATCTGAACAGGCGACTGATGGTGANTAGAATCCGTGGAGTCGCCATT
JMSF016P16+ CAGGCGACTGATGGTGACTAGAATCCGTGGAGTCGCCATT
____________________________________________________________
consensus GGTGAGCAGGCTGATCTGAACAGGCGACTGATGGTGACTAGAATCCGTGGAGTCGCCATT
. : . : . : . : . : . :
JMFF046N22+ GGAAACCCTATGAGGTGAAAACGCCGAATCGGCCTGTGACCGACGCTGATGAAGCTCCTC
JMFF016E16+ GGAAACCCTATGAGGTGAAAACGCCGAATCGGCCTGTGACCGACGCTGATGAAGCTCCTC
JMFF024L17+ GGAAACCCTATGAGGTGAAAACGCCGAATCGGCCTGTGACCGACGCTGATGAAGCTCCTC
JMSF016P16+ GGAAACCCTATGAGGTGAAAACGCCGAATCGGCCTGTGACCGACGCTGATGAAGCTCCTC
____________________________________________________________
consensus GGAAACCCTATGAGGTGAAAACGCCGAATCGGCCTGTGACCGACGCTGATGAAGCTCCTC
. : . : . : . : . : . :
JMFF046N22+ CGCCCCTGCCAACTCCACCTCCTGCTTTAAATTCAAGTACGGCACCTTGATTGACACCAC
JMFF016E16+ CGCCCCTGCCAACTCCACCTCCTGCTTTAAATTCAAGTACGGCACCTTGATTGACACCAC
JMFF024L17+ CGCCCCTGCCAACTCCACCTCCTGCTTTAAATTCAAGTACGGCACCTTGATTGACACCAC
JMSF016P16+ CGCCCCTGCCAACTCCACCTCCTGCTCTAAATTCAAGTACGGCACCTTGATTGACACCAC
____________________________________________________________
consensus CGCCCCTGCCAACTCCACCTCCTGCTTTAAATTCAAGTACGGCACCTTGATTGACACCAC
. : . : . : . : . : . :
JMFF046N22+ CTCCATCATCTTCGCCTCCTTCCCACCTCCCCTTCCACTGATCCACTCAATTCACGCCCA
JMFF016E16+ CTCCATCATCTTCGCCTCCTTCCCACCTCCCCTTCCACTGATCCACTCAATTCACGCCCA
JMFF024L17+ CTCCATCATCTTCGCCTCCTTCCCACCTCCCCTTCCACTGATCCACTCAATTCACGCCCA
JMSF016P16+ CTCCATCATCTTCGCCTCCTTCCCACCTCCCCTTCCACTGATCCACTCAATTCACGCCCA
____________________________________________________________
consensus CTCCATCATCTTCGCCTCCTTCCCACCTCCCCTTCCACTGATCCACTCAATTCACGCCCA
. : . : . : . : . : . :
JMFF046N22+ ATTTTTTCACATCCAAATGTCCAAAGCTCTAAATCATCTGAATGCCGACGAGTGATTTTG
JMFF016E16+ ACTTTTTCACATCCAAATGTCCAAAGCTCTAAATCATCTGAATGCCGACGAGTGATTTTG
JMFF024L17+ ATTTTTTCACATCCAAATGTCCAAAGCTCTAAATCATCTGAATGCCGACGAGTGATTTTG
JMSF016P16+ ATTTTTTCACATCCAAATGTCCAAAGCTCTAAATCATCTGAATGACGACGAGTGATTTTG
____________________________________________________________
consensus ATTTTTTCACATCCAAATGTCCAAAGCTCTAAATCATCTGAATGCCGACGAGTGATTTTG
. : . : . : . : . : . :
JMFF046N22+ ACTCGTGCAAATCTAAATTGAATCCGATTCAAAC
JMFF016E16+ ACTCGTGCAAATCTAAATTGAATCCGATTCAAACGAATTGATTGATTATCCAAATGGGTG
JMFF024L17+ ACTCGTGCAAATCTAAATTGAATCCGATTCAAACGAATTGATTGATTATCCAAATGGGTG
JMSF016P16+ ACTCGTGCAAATCTAAATTGAATCCGATTCAAACGAATTGATTGATTATCCAAATGGGTG
____________________________________________________________
consensus ACTCGTGCAAATCTAAATTGAATCCGATTCAAACGAATTGATTGATTATCCAAATGGGTG
. : . : . : . : . : . :
JMFF016E16+ CAATTAAGAGAGAAGAGATGAAGATTCACAGATCAAAATTTGGGCGCGCTTT
JMFF024L17+ CAATTAAGAGAGAAGAGATGAAGATTCACAGATCAAAATTTGGGCGCGCTTTTGTGTGAT
JMSF016P16+ CAATTAAGAGAGAAGAGATGAAGATTCACAGATCAAAATTTGGGCGCGCTTTTGTGTGAT
____________________________________________________________
consensus CAATTAAGAGAGAAGAGATGAAGATTCACAGATCAAAATTTGGGCGCGCTTTTGTGTGAT
. : . : . : . : . : . :
JMFF024L17+ TC
JMSF016P16+ TCTCCCTGTCGGGTTTCTTGAGGGTATTCCTTCAGATACAGCGCATCGCCATTGACGCCA
____________________________________________________________
consensus TCTCCCTGTCGGGTTTCTTGAGGGTATTCCTTCAGATACAGCGCATCGCCATTGACGCCA