Contig 010644:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF016M19Sequence508010644 (2)ref|XP_006345076.1|5e-68PREDICTED: uncharacterized protein LOC102602919 isoform X1 [Solanum tuberosum]758010644 (2)ref|NP_001289445.1|1e-59uncharacterized LOC104102001 [Nicotiana tomentosiformis] dbj|BAI48083.1| MIS12 h

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF016M19-                    AACATTGCTTACATGGTTATAATAGCAGAGCATTGTAATCCTGTACAGTT
                      ____________________________________________________________
consensus                       AACATTGCTTACATGGTTATAATAGCAGAGCATTGTAATCCTGTACAGTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF016M19-          GGTCCCAATAAAGACTTGCTAAAGATCATTTGGTCATTATGTTGTCTAGAAATTGGTGAA
                      ____________________________________________________________
consensus             GGTCCCAATAAAGACTTGCTAAAGATCATTTGGTCATTATGTTGTCTAGAAATTGGTGAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF016M19-          GGTCATCAAGTTCTGCATTGAGCAGACCAGAATGGTCATGGCCACCATGATAATTCAGCC
                      ____________________________________________________________
consensus             GGTCATCAAGTTCTGCATTGAGCAGACCAGAATGGTCATGGCCACCATGATAATTCAGCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF016M19-          TAAGCACATCCCCATCCAGTTTGCGAATCTTCTCTGCTCTCGAACGCTCAATCTCTTTAA
                      ____________________________________________________________
consensus             TAAGCACATCCCCATCCAGTTTGCGAATCTTCTCTGCTCTCGAACGCTCAATCTCTTTAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF016M19-          ACGCTCTATTTTTATGATTCTCCAAACTTGACCGAAACTCTGATGCAGTTTTTACCAGCT
                      ____________________________________________________________
consensus             ACGCTCTATTTTTATGATTCTCCAAACTTGACCGAAACTCTGATGCAGTTTTTACCAGCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF016M19-          CTTCAAACTTCTCTTGCACAAGCTGTTCATTATAAAACTGCAATGCTTCATTAAGAGATG
                      ____________________________________________________________
consensus             CTTCAAACTTCTCTTGCACAAGCTGTTCATTATAAAACTGCAATGCTTCATTAAGAGATG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF016M19-          CCACAGAGTGATTGCTCATGCGGGACTGCCTTTCCAGTGCTCGAAGTTCTTGTTGAGGTC
JMSF016M19+                                           TCCAGTGCTCGAAGTTCTTGTTGAGGTC
                      ____________________________________________________________
consensus             CCACAGAGTGATTGCTCATGCGGGACTGCCTTTCCAGTGCTCGAAGTTCTTGTTGAGGTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF016M19-          AGCAGACTCTTTACCTACCTGAGTAAGTTTATTTCTCAAAGAATCCAACTGCGCATCTAA
JMSF016M19+           AGCAGACTCTTTACCTACCTGAGTAAGTTTATTTCTCAAAGAATCCAACTGCGCATCTAA
                      ____________________________________________________________
consensus             AGCAGACTCTTTACCTACCTGAGTAAGTTTATTTCTCAAAGAATCCAACTGCGCATCTAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF016M19-          TTCTGCATCACCAAGACTGTCAAGATCCAAGGAAGTATCACCAGATGGTTCATCAGCTTT
JMSF016M19+           TTCTGCATCACCAAGACTGTCAAGATCCAAGGAAGTATCACCAGATGGTTCATCAGCTTT
                      ____________________________________________________________
consensus             TTCTGCATCACCAAGACTGTCAAGATCCAAGGAAGTATCACCAGATGGTTCATCAGCTTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF016M19-          AGGCAAAGAGAATCCTTCTGGCACAGTAAAACAGTGCCGCAAACAGTACTTCTCCCACAT
JMSF016M19+           AGGCAAAGAGAATCCTTCTGGCACAGTAAAACAGTGCCGCAAACAGTACTTCTCCCACAT
                      ____________________________________________________________
consensus             AGGCAAAGAGAATCCTTCTGGCACAGTAAAACAGTGCCGCAAACAGTACTTCTCCCACAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF016M19-          ACTCAACCGCTTGTCCAGAGCCAATTGAACCATGTTCCGTATATAAGCTACGCCCTTTTT
JMSF016M19+           ACTCAACCGCTTGTCCAGAGCCAATTGAACCATGTTCCGTATATAAGCTACGCCCTTTTT
                      ____________________________________________________________
consensus             ACTCAACCGCTTGTCCAGAGCCAATTGAACCATGTTCCGTATATAAGCTACGCCCTTTTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF016M19-          TAGATCATCGGATCGATCAGTCCCCTCGGTTTTCAGAATAACCGCTGCCTCCTGCTGGAA
JMSF016M19+           TAGATCATCGGATCGATCAGTCCCCTCGGTTTTCAGAATAACCGCTGCCTCCTGCTGGAA
                      ____________________________________________________________
consensus             TAGATCATCGGATCGATCAGTCCCCTCGGTTTTCAGAATAACCGCTGCCTCCTGCTGGAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF016M19-          GAAATCAAAGGCTTCGTCGACGAGGTCGTCGACGGAATNGATAACCTC            
JMSF016M19+           GAAATCAAAGGCTTCGTCGACGAGGTCGTCGACGGAATTGATAACCTCGTTGATGAATAA
                      ____________________________________________________________
consensus             GAAATCAAAGGCTTCGTCGACGAGGTCGTCGACGGAATTGATAACCTCGTTGATGAATAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF016M19+           CTGAGGGTTTAGGTTGAAGGAATCGAAGATCTTCTCACTCTCGCTGCCTTCCATTTCGCA
                      ____________________________________________________________
consensus             CTGAGGGTTTAGGTTGAAGGAATCGAAGATCTTCTCACTCTCGCTGCCTTCCATTTCGCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF016M19+           CGATTTTCTTCGTTCTTTTCAAAATGTTGACTGCTGAGAGCTTTGATACACTGAAGTTCC
                      ____________________________________________________________
consensus             CGATTTTCTTCGTTCTTTTCAAAATGTTGACTGCTGAGAGCTTTGATACACTGAAGTTCC