Contig 010641:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS030E09Sequence620010641 (3)
JMSF016F07Sequence289010641 (3)
JMSF018H03Sequence221010641 (3)743006141 (4)ref|XP_004137828.1|8e-66PREDICTED: 29 kDa ribonucleoprotein, chloroplastic-like [Cucumis sativus] ref|X

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS030E09+                                                    GCCAATCCTATGTAATTCC
                      ____________________________________________________________
consensus                                                      GCCAATCCTATGTAATTCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS030E09+           ACACTACAAGTGTCATCATTACAAATTCTAGAATCCGGAAAGAGTTAATAATATTTTCAT
                      ____________________________________________________________
consensus             ACACTACAAGTGTCATCATTACAAATTCTAGAATCCGGAAAGAGTTAATAATATTTTCAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS030E09+           GTCTTTATCCTAACACGCTTTCAATTTATTTCATTCTACAATTTTTTTTAGTCTGTGTGG
                      ____________________________________________________________
consensus             GTCTTTATCCTAACACGCTTTCAATTTATTTCATTCTACAATTTTTTTTAGTCTGTGTGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS030E09+           AGAATTCGCTGTTAAGGTCATGAACTTGAACAAATTTTTGGCTGTTCAGTGTTCAACCAG
                      ____________________________________________________________
consensus             AGAATTCGCTGTTAAGGTCATGAACTTGAACAAATTTTTGGCTGTTCAGTGTTCAACCAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS030E09+           TTCGATCATAAGAATCATTAGAAACTATCATTTTTCAAATACTAATTTGACTAAGAATCG
                      ____________________________________________________________
consensus             TTCGATCATAAGAATCATTAGAAACTATCATTTTTCAAATACTAATTTGACTAAGAATCG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS030E09+           CATAATAAAACGCATACGACGACAACAGCTAAACGTAATCCAGAAACAACTAAACCAGCT
                      ____________________________________________________________
consensus             CATAATAAAACGCATACGACGACAACAGCTAAACGTAATCCAGAAACAACTAAACCAGCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS030E09+           TGCAAAAATTCCAACTCTAGCCGAAACACATCAGATATGGGATGTTTTCCTCAACAGTTT
                      ____________________________________________________________
consensus             TGCAAAAATTCCAACTCTAGCCGAAACACATCAGATATGGGATGTTTTCCTCAACAGTTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS030E09+           GCTGTTCTGAGATATTTCTACGCGAAAATCAATGACAATAAGAGGAGAGAGAAGGAGAAA
                      ____________________________________________________________
consensus             GCTGTTCTGAGATATTTCTACGCGAAAATCAATGACAATAAGAGGAGAGAGAAGGAGAAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS030E09+           GCAAGATAAATCTTACAGATATGGCTTTAGGGTAAGGAGGATTGGCATCCTGGCCGGCGA
                      ____________________________________________________________
consensus             GCAAGATAAATCTTACAGATATGGCTTTAGGGTAAGGAGGATTGGCATCCTGGCCGGCGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS030E09+           TCAAAGCTTCCGACGCCGGAAAAGGAATCGCGATCAGAACCAAACAAATAGCTGCGAAGC
JMSF018H03-                                                   CAAACAAAGAGCTGCGAAGC
                      ____________________________________________________________
consensus             TCAAAGCTTCCGACGCCGGAAAAGGAATCGCGATCAGAACCAAACAAATAGCTGCGAAGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS030E09+           TAACCCATCGAATCCTCGTCGGAGCCATGCGGCCGGAGAA                    
JMSF018H03-           TAACCGATCGAATCCTCATCGGAGCCATGCGGCCGGAGAATTCTAGAACGCAGGGGACGA
                      ____________________________________________________________
consensus             TAACCGATCGAATCCTCGTCGGAGCCATGCGGCCGGAGAATTCTAGAACGCAGGGGACGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF018H03-           GAGCCGTCTAGATCTAAGTGGTTGACGACCTCCATCGCAAGCTCCCTGTCGCATCGCA  
JMSF016F07+                      ATCTAAGTGGTTGACGACCTCCATCGCAAGCTCCCTGTCGCATCGCAGA
                      ____________________________________________________________
consensus             GAGCCGTCTAGATCTAAGTGGTTGACGACCTCCATCGCAAGCTCCCTGTCGCATCGCAGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF016F07+           AGGGAGAGGATTTTGAGAGAGTGTGGGATTAGAGAGAAGACATGCTCTCCGTGTCGCATC
                      ____________________________________________________________
consensus             AGGGAGAGGATTTTGAGAGAGTGTGGGATTAGAGAGAAGACATGCTCTCCGTGTCGCATC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF016F07+           ACAAACCTCCATCGCAAGCTCCCTCCGTCGCGGTGGTGGCAGTGAACGGTGGGTGGCAAC
                      ____________________________________________________________
consensus             ACAAACCTCCATCGCAAGCTCCCTCCGTCGCGGTGGTGGCAGTGAACGGTGGGTGGCAAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF016F07+           AAGGGCAGTGAGACGATTGGTGCGACGGTGGATCGAAGCAACGGTAGATGAAGACTATTT
                      ____________________________________________________________
consensus             AAGGGCAGTGAGACGATTGGTGCGACGGTGGATCGAAGCAACGGTAGATGAAGACTATTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF016F07+           TAGATCAGATGAGATGCGATTTCTGATCTAGTTAGTAGATCTAGTCCAGGGTTAATATTC
                      ____________________________________________________________
consensus             TAGATCAGATGAGATGCGATTTCTGATCTAGTTAGTAGATCTAGTCCAGGGTTAATATTC