Contig 010632:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF045I02Sequence647020642gb|KHG28977.1|2e-92U4/U6 small nuclear ribonucleoprotein Prp31 [Gossypium arboreum]609010632 (4)ref|XP_003553898.1|4e-49PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp31-like [Glycine max] gb|KH
JMFN016C06Sequence626010632 (4)ref|XP_006355421.1|1e-77PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp31-like [Solanum tuberosum]
JMSF014J02Sequence477010632 (4)ref|XP_002320218.2|4e-73hypothetical protein POPTR_0014s09840g [Populus trichocarpa] gb|EEE98533.2| hypo758010632 (4)ref|XP_010251303.1|3e-73PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp31 [Nelumbo nucifera] ref|X

Alignment

This contig is upended


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rJMFF045I02-                                      CTTTTTTTTTTTTTTTATACAAAATAAAACTG
rJMSF014J02-                                                     TATACAAAATAAAACTG
                      ____________________________________________________________
consensus                                         CTTTTTTTTTTTTTTTATACAAAATAAAACTG
 
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rJMFF045I02-          AGATAAATCATTATTTTAGAGAATTGATGACAAGCATGGGTTACAAAAAACCAGTATCAA
rJMSF014J02-          AGATAAATCATTATTTTAGAGAATTGATGACAAGCATGGGTTACAAAAAACCAGTATCAA
                      ____________________________________________________________
consensus             AGATAAATCATTATTTTAGAGAATTGATGACAAGCATGGGTTACAAAAAACCAGTATCAA
 
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rJMFF045I02-          CCCAAAAACAGAGGCTGAAGCATCAGGGTTTCGGTTAAAGAAGAAGCAAACAAAATAGCA
JMFN016C06+                         CTGAAGCATCAGGGTTTCGGTTAAAGAAGAAGCAAACAAAATAGCA
rJMSF014J02-          CCCAAAAACAGAGGCTGAAGCATCAGGGTTTCGGTTAAAGAAGAAGCAAACAAAATAGCA
                      ____________________________________________________________
consensus             CCCAAAAACAGAGGCTGAAGCATCAGGGTTTCGGTTAAAGAAGAAGCAAACAAAATAGCA
 
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rJMFF045I02-          CAAGTTAGCGGACATACTGTAGGCATTATGTTCTCTTGATCTTGGAAAATGTTCCGGTTT
JMFN016C06+           CAAGTTAGCGGACATACTGTAGGCATTATGTTCTCTTGATCTTGGAAAATGTTCCGGTTT
rJMSF014J02-          CAAGTTAGCGGACATACTGTAGGCATTATGTTCTCTTGATCTTGGAAAATGTTCCGGTTT
                      ____________________________________________________________
consensus             CAAGTTAGCGGACATACTGTAGGCATTATGTTCTCTTGATCTTGGAAAATGTTCCGGTTT
 
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rJMFF045I02-          CTGAGAAGTACGTGCTCTGGGTTCCTGACCCAAGTTGATTTACATATGCTTGTGGGTTCG
JMFN016C06+           CTGAGAAGTACGTGCTCTGGGTTCCTGACCCAAGTTGATTTACATATGCTTGTGGGTTCG
rJMSF014J02-          CTGAGAAGTACGTGCTCTGGGTTCCTGACCCAAGTTGATTTACATATGCTTGTGGGTTCG
                      ____________________________________________________________
consensus             CTGAGAAGTACGTGCTCTGGGTTCCTGACCCAAGTTGATTTACATATGCTTGTGGGTTCG
 
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rJMFF045I02-          ACAGTTCAATCCCCTGCACAGGAGTGAAGGCTAAACTTGAAGTCAGTCCCGATGTAGCAC
JMFN016C06+           ACAGTTCAATCCCCTGCACAGGAGTGAAGGCTAAACTTGAAGTCAGTCCCGATGTAGCAC
rJMSF014J02-          ACAGTTCAATCCCCTGCACAGGAGTGAAGGCTAAACTTGAAGTCAGTCCCGATGTAGCAC
                      ____________________________________________________________
consensus             ACAGTTCAATCCCCTGCACAGGAGTGAAGGCTAAACTTGAAGTCAGTCCCGATGTAGCAC
 
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rJMFF045I02-          CACTGCTTCCATAATTCTTCTCCTTAAATTTCTTAGCTACTTTGGCAGCAAGCTTGCTCT
JMFN016C06+           CACTGCTTCCATAATTCTTCTCCTTAAATTTCTTAGCTACTTTGGCAGCAAGCTTGCTCT
rJMSF014J02-          CACTGCTTCCATAATTCTTCTCCTTAAATTTCTTAGCTACTTTGGCAGCAAGCTTGCTCT
                      ____________________________________________________________
consensus             CACTGCTTCCATAATTCTTCTCCTTAAATTTCTTAGCTACTTTGGCAGCAAGCTTGCTCT
 
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rJMFF045I02-          GGCCAACTGACACGCGTAATTTGCCACTTCCAGCCTGACCAAGCATTCCATATCCCTCAC
JMFN016C06+           GGCCAACTGACACGCGTAATTTGCCACTTCCAGCCTGACCAAGCATTCCATATCCCTCAC
rJMSF014J02-          GGCCAACTGACACGCGTAATTTGCCACTTCCAGCCTGACCAAGCATTCCATATCCCTCAC
                      ____________________________________________________________
consensus             GGCCAACTGACACGCGTAATTTGCCACTTCCAGCCTGACCAAGCATTCCATATCCCTCAC
 
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rJMFF045I02-          CCAAACCATCCCCCAATGAGCTCTCTTCAGGTATTCCAAACTGCATTCTGTTAGCCAGCT
JMFN016C06+           CCAAACCATCCCCCAATGAGCTCTCTTCAGGTATTCCAAACTGCATTCTGTTAGCCAGCT
rJMSF014J02-          CCAAACCATCCCCCAATGAGCTCTCTTCAGGTATTCCAAACTGCATTCTGTTAGCCAGCT
JMSF014J02+              AACCATCCCCCAATGAGCTCTCTTCAGGTATTCCAAACTGCATTCTGTTAGCCAGCT
                      ____________________________________________________________
consensus             CCAAACCATCCCCCAATGAGCTCTCTTCAGGTATTCCAAACTGCATTCTGTTAGCCAGCT
 
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rJMFF045I02-          TCCGCATGTCTGTAATGGCATACCTTTCTTTCATCTTCCTCAGTCTACGTCCACCCCTCT
JMFN016C06+           TCCGCATGTCTGTAATGGCATACCTTTCTTTCATCTTCCTCAGTCTACGTCCACCCCTCT
rJMSF014J02-          TCCGCATGTCTGTAATGGCATACCTTTCTTTCATCTTCCTCAGTCTACGTCCACCCCTCT
JMSF014J02+           TCCGCATGTCTGTAATGGCATACCTTTCTTTCATCTTCCTCAGTCTACGTCCACCCCTCT
                      ____________________________________________________________
consensus             TCCGCATGTCTGTAATGGCATACCTTTCTTTCATCTTCCTCAGTCTACGTCCACCCCTCT
 
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rJMFF045I02-          TTTTTTTAGGCTCAGAATCTGGAACAGGAAGTGGTCT                       
JMFN016C06+           TTTTTTTAGGCTCAGAATCTGGAACAGGAAGTGGTCTAGGCTGTTTGGCAGGAGGTGGCT
rJMSF014J02-          TTTTTTTAGGCTCAGAATCTGGAACAGGAAGTGGTCTAGGCTGTTTGGCAGGAGGTGGCT
JMSF014J02+           TTTTTTTAGGCTCAGAATCTGGAACAGGAAGTGGTCTAGGCTGTTTGGCAGGAGGTGGCT
                      ____________________________________________________________
consensus             TTTTTTTAGGCTCAGAATCTGGAACAGGAAGTGGTCTAGGCTGTTTGGCAGGAGGTGGCT
 
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JMFN016C06+           CTTGCCACTTCTCTATCTTCTTACGAACCTCTTCTAGGAGAGATCGCCCAGTTTTCCCCG
rJMSF014J02-          CTTGCCACTTCTCTATCTTCTTACGAACCTCTTCTAGGAGAGATCGCCCAGTTTTCCCCG
JMSF014J02+           CTTGCCACTTCTCTATCTTCTTACGAACCTCTTCTAGGAGAGATCGCCCAGTTTTCCCCG
                      ____________________________________________________________
consensus             CTTGCCACTTCTCTATCTTCTTACGAACCTCTTCTAGGAGAGATCGCCCAGTTTTCCCCG
 
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JMFN016C06+           TTGGGTCTCCCCTTGTTGAATCAACACGTGCAGCAAGGGT                    
rJMSF014J02-          TTGGGTCTCCCCTTGTTGAATCAACACGTGCAGCAAGGGTAGCTTTCGCAGCTAACAGTC
JMSF014J02+           TTGGGTCTCCCCTTGTTGAATCAACACGTGCAGCAAGGGTAGCTTTCGCAGCTAACAGTC
                      ____________________________________________________________
consensus             TTGGGTCTCCCCTTGTTGAATCAACACGTGCAGCAAGGGTAGCTTTCGCAGCTAACAGTC
 
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rJMSF014J02-          GACAGGCACGCATCCT                                            
JMSF014J02+           GACAGGCACGCATCCTTAGAGGAGGGGGTGTGCTCTGAAATATTTCTGTCTGCTCAATAA
                      ____________________________________________________________
consensus             GACAGGCACGCATCCTTAGAGGAGGGGGTGTGCTCTGAAATATTTCTGTCTGCTCAATAA
 
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JMSF014J02+           ATCCAATGCGAAATTGGGATGTCGCTGTGGAGAACCCAGCAAGGGTCTTCTTTTTAGCAC
                      ____________________________________________________________
consensus             ATCCAATGCGAAATTGGGATGTCGCTGTGGAGAACCCAGCAAGGGTCTTCTTTTTAGCAC
 
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JMSF014J02+           CAAGAACCTGCACATTACAAGCAGGCATCTTCGCCAATGAGGAAAGACCACCAGCAGTCC
                      ____________________________________________________________
consensus             CAAGAACCTGCACATTACAAGCAGGCATCTTCGCCAATGAGGAAAGACCACCAGCAGTCC