Contig 010630:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS011F04Sequence627010630 (2)ref|XP_006339413.1|9e-65PREDICTED: mediator of RNA polymerase II transcription subunit 33A-like [Solanu
JMSF014C10Sequence224010630 (2)780024507gb|KDP40093.1|3e-103hypothetical protein JCGZ_02091 [Jatropha curcas]

Alignment

This contig is upended


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JMFS011F04+                                                  AAAATAATGTCAATCACAAGA
                      ____________________________________________________________
consensus                                                    AAAATAATGTCAATCACAAGA
 
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JMFS011F04+           GTGCCATGCTCCTCGGCCCGTCTGCCAAATATCTGAGAGAAATGGAGAACAGAGTCCAAG
                      ____________________________________________________________
consensus             GTGCCATGCTCCTCGGCCCGTCTGCCAAATATCTGAGAGAAATGGAGAACAGAGTCCAAG
 
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JMFS011F04+           TAATCCATGACCTTTTCATTGATTGGCATGCATACGTGCATTTTAAGTGTGAATATGTGT
                      ____________________________________________________________
consensus             TAATCCATGACCTTTTCATTGATTGGCATGCATACGTGCATTTTAAGTGTGAATATGTGT
 
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JMFS011F04+           CTTTTCAGGAGTTCCATATAAAGCCTGAAGGCTGCAGGTCGCAAATGACGATTTGGGATA
                      ____________________________________________________________
consensus             CTTTTCAGGAGTTCCATATAAAGCCTGAAGGCTGCAGGTCGCAAATGACGATTTGGGATA
 
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JMFS011F04+           ACCCTATTGGATAGCAGTGGAAAGACAATGAGAGAAGGCACAATCTTGAGAACCAAGGCC
                      ____________________________________________________________
consensus             ACCCTATTGGATAGCAGTGGAAAGACAATGAGAGAAGGCACAATCTTGAGAACCAAGGCC
 
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JMFS011F04+           TTCTCCAACAATTTCCAAGCAGAGGGCACATTATTCTCCCAGCAAATGTGAGACACCAAG
                      ____________________________________________________________
consensus             TTCTCCAACAATTTCCAAGCAGAGGGCACATTATTCTCCCAGCAAATGTGAGACACCAAG
 
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JMFS011F04+           AGATGGGCCAGGTGAATAGAAGGCAGAGGCGCTCCAGCTGAGGTCAAATGTGAGGAAACT
                      ____________________________________________________________
consensus             AGATGGGCCAGGTGAATAGAAGGCAGAGGCGCTCCAGCTGAGGTCAAATGTGAGGAAACT
 
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JMFS011F04+           TGAATTGCCCACACCAAAGGGTCACAACCCTTCTCTTGGGCCACCTTCGTTAGCTCCAAA
                      ____________________________________________________________
consensus             TGAATTGCCCACACCAAAGGGTCACAACCCTTCTCTTGGGCCACCTTCGTTAGCTCCAAA
 
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JMFS011F04+           ACATCATCCCAGATGCTGCTGCACTGTACAGACACCTCCATCACATCACTCTCTCATATC
JMSF014C10+                           TGCTGCACTGTACAGACACCTCCATCACATCACTCTCTCATATC
                      ____________________________________________________________
consensus             ACATCATCCCAGATGCTGCTGCACTGTACAGACACCTCCATCACATCACTCTCTCATATC
 
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JMFS011F04+           CCTTTTCTTTCCTACTCAGAGTCAGAGACCTCTGTTACTGGATGTATGGGAAATTGGGGA
JMSF014C10+           CCTTTTCTTTCCTACTCAGAGTCAGAGACCTCTGTTACTGGATGTATGGGAAATTGGGGA
                      ____________________________________________________________
consensus             CCTTTTCTTTCCTACTCAGAGTCAGAGACCTCTGTTACTGGATGTATGGGAAATTGGGGA
 
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JMFS011F04+           TTGGGGATTGGGGACTGGGGATGAGGAGTCTTGCAGAGTTTTTTACCAGAAGAATAATGA
JMSF014C10+           TTGGGGATTGGGGACTGGGGATGAGGAGTCTTGCAGAGTTTTTTACCAGAAGAATAATGA
                      ____________________________________________________________
consensus             TTGGGGATTGGGGACTGGGGATGAGGAGTCTTGCAGAGTTTTTTACCAGAAGAATAATGA
 
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JMFS011F04+           ATCCTT                                                      
JMSF014C10+           ATCCTTTGGAGTTTTGAGAGTGGGAAGTTGTGGGAGTGGAGACTATTTGGTGGTGCAGTC
                      ____________________________________________________________
consensus             ATCCTTTGGAGTTTTGAGAGTGGGAAGTTGTGGGAGTGGAGACTATTTGGTGGTGCAGTC