Contig 010627:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF013D14Sequence381010627 (4)ref|XP_004233324.1|3e-18PREDICTED: glycosylphosphatidylinositol anchor attachment 1 protein [Solanum ly723007186 (4)ref|XP_009614825.1|1e-60PREDICTED: glycosylphosphatidylinositol anchor attachment 1 protein [Nicotiana
JMSF027M14Sequence679010627 (4)ref|XP_006357158.1|5e-86PREDICTED: glycosylphosphatidylinositol anchor attachment 1 protein-like isofor722007186 (4)ref|XP_002274196.2|3e-60PREDICTED: glycosylphosphatidylinositol anchor attachment 1 protein [Vitis vini
JMSF028E17Sequence650010627 (4)ref|XP_006357158.1|4e-81PREDICTED: glycosylphosphatidylinositol anchor attachment 1 protein-like isofor694007186 (4)ref|XP_002274196.2|1e-59PREDICTED: glycosylphosphatidylinositol anchor attachment 1 protein [Vitis vini
JMSF037P16Sequence679010627 (4)ref|XP_006357158.1|2e-86PREDICTED: glycosylphosphatidylinositol anchor attachment 1 protein-like isofor691007186 (4)ref|XP_002274196.2|1e-57PREDICTED: glycosylphosphatidylinositol anchor attachment 1 protein [Vitis vini

Alignment

This contig is upended


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JMSF037P16+                  CACGNAGCAACTGCAGCATAATCCCCAAGCTGGGAATCCGCAGCAAGCCATAT
JMSF028E17+                                                     ATCCGCAGCAAGCCATAT
JMSF027M14+                        GCAACTGCAGCATAATCCCCAAGCTGGGAATCCGCAGCAAGCCATAT
                      ____________________________________________________________
consensus                    CACGNAGCAACTGCAGCATAATCCCCAAGCTGGGAATCCGCAGCAAGCCATAT
 
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JMSF037P16+           AATATCTTTGGCTAACCAAGTGACTCGAGTAAGCAGAGAGAACACTGAGTATCCAATGCC
JMSF028E17+           AATATCTTTGGCTAACCAAGTGACTCGAGTAAGCAGAGAGAACACTGAGTATCCAATGCC
JMSF027M14+           AATATCTTTGGCTAACCAAGTGACTCGAGTAAGCAGAGAGAACACTGAGTATCCAATGCC
                      ____________________________________________________________
consensus             AATATCTTTGGCTAACCAAGTGACTCGAGTAAGCAGAGAGAACACTGAGTATCCAATGCC
 
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JMSF037P16+           TAGAGATAAAGCCTCACCCGCAGTGACCTTCATAGAATTATAAGGTGTCACCAGTACAAT
JMSF028E17+           TAGAGATAAAGCCTCACCCGCAGTGACCTTCATAGAATTATAAGGTGTCACCAGTACAAT
JMSF027M14+           TAGAGATAAAGCCTCACCCGCAGTGACCTTCATAGAATTATAAGGTGTCACCAGTACAAT
                      ____________________________________________________________
consensus             TAGAGATAAAGCCTCACCCGCAGTGACCTTCATAGAATTATAAGGTGTCACCAGTACAAT
 
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JMSF037P16+           AGCTTCCTTTCCATCACCACGTGGAGCTCTAATTATTCCAACTGTATTGATACCATATGT
JMSF028E17+           AGCTTCCTTTCCATCACCACGTGGAGCTCTAATTATTCCAACTGTATTGATACCATATGT
JMSF027M14+           AGCTTCCTTTCCATCACCACGTGGAGCTCTAATTATTCCAACTGTATTGATACCATATGT
                      ____________________________________________________________
consensus             AGCTTCCTTTCCATCACCACGTGGAGCTCTAATTATTCCAACTGTATTGATACCATATGT
 
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JMSF037P16+           TGAACAGCTGTAGTTCTCTTGAACTATTTCAGGATCAGGACTAGAAAAGAAACGCAACGG
JMSF028E17+           TGAACAGCTGTAGTTCTCTTGAACTATTTCAGGATCAGGACTAGAAAAGAAACGCAACGG
JMSF027M14+           TGAACAGCTGTAGTTCTCTTGAACTATTTCAGGATCAGGACTAGAAAAGAAACGCAACGG
                      ____________________________________________________________
consensus             TGAACAGCTGTAGTTCTCTTGAACTATTTCAGGATCAGGACTAGAAAAGAAACGCAACGG
 
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JMSF037P16+           TTGAAACTTATTCACTTGAGGCTGGAATTTGTGAAAATTTACTTCACCACCCAAATCCTT
JMSF028E17+           TTGAAACTTATTCACTTGAGGCTGGAATTTGTGAAAATTTACTTCACCACCCAAATCCTT
JMSF027M14+           TTGAAACTTATTCACTTGAGGCTGGAATTTGTGAAAATTTACTTCACCACCCAAATCCTT
JMSF013D14+                                                  TACTTCACCACCCAAATCCTT
                      ____________________________________________________________
consensus             TTGAAACTTATTCACTTGAGGCTGGAATTTGTGAAAATTTACTTCACCACCCAAATCCTT
 
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JMSF037P16+           AATGTGCTGTGCGATTATTCCTGGAATACCTATGCCTGAGCCAGCTGATCCTGAATTGAA
JMSF028E17+           AATGTGCTGTGCGATTATTCCTGGAATACCTATGCCTGAGCCAGCTGATCCTGAATTGAA
JMSF027M14+           AATGTGCTGTGCGATTATTCCTGGAATACCTATGCCTGAGCCAGCTGATCCTGAATTGAA
JMSF013D14+           AATGTGCTGTGCGATTATTCCTGGAATACCTATGCCTGAGCCAGCTGATCCTGAATTGAA
                      ____________________________________________________________
consensus             AATGTGCTGTGCGATTATTCCTGGAATACCTATGCCTGAGCCAGCTGATCCTGAATTGAA
 
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JMSF037P16+           GCTGAGTATATTGTTCACAAATCTACTGGCCTGTGAAACATCATCATGTGAAAGCATTGG
JMSF028E17+           GCTGAGTATATTGTTCACAAATCTACTGGCCTGTGAAACATCATCATGTGAAAGCATTGG
JMSF027M14+           GCTGAGTATATTGTTCACAAATCTACTGGCCTGTGAAACATCATCATGTGAAAGCATTGG
JMSF013D14+           GCTGAGTATATTGTTCACAAATCTACTGGCCTGTGAAACATCATCATGTGAAAGCATTGG
                      ____________________________________________________________
consensus             GCTGAGTATATTGTTCACAAATCTACTGGCCTGTGAAACATCATCATGTGAAAGCATTGG
 
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JMSF037P16+           ACTAGCAGAACCAGGCATGAGCGCATTTTCGGAAATGTAAGTGTTCTTAGCGAGAACTGG
JMSF028E17+           ACTAGCAGAACCAGGCATGAGCGCATTTTCGGAAATGTAAGTGTTCTTAGCGAGAACTGG
JMSF027M14+           ACTAGCAGAACCAGGCATGAGCGCATTTTCGGAAATGTAAGTGTTCTTAGCGAGAACTGG
JMSF013D14+           ACTAGCAGAACCAGGCATGAGCGCATTTTCGGAAATGTAAGTGTTCTTAGCGAGAACTGG
                      ____________________________________________________________
consensus             ACTAGCAGAACCAGGCATGAGCGCATTTTCGGAAATGTAAGTGTTCTTAGCGAGAACTGG
 
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JMSF037P16+           TAAGAGCAATAGCGCCAAAACCCCCGCTGTACAGCACACAACGCTGACGAGGAGGCTGTG
JMSF028E17+           TAAGAGCAATAGCGCCAAAACCCCCGCTGTACAGCACACAACGCTGACGAGGAGGCTGTG
JMSF027M14+           TAAGAGCAATAGCGCCAAAACCCCCGCTGTACAGCACACAACGCTGACGAGGAGGCTGTG
JMSF013D14+           TAAGAGCAATAGCGCCAAAACCCCCGCTGTACAGCACACAACGCTGACGAGGAGGCTGTG
                      ____________________________________________________________
consensus             TAAGAGCAATAGCGCCAAAACCCCCGCTGTACAGCACACAACGCTGACGAGGAGGCTGTG
 
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JMSF037P16+           AGAAACAAGAAGAAGGCCGATGCGGATGATAGGTCGAGGCCTCGGCTTCGTAGGATCGAT
JMSF028E17+           AGAAACAAGAAGAAGGCCGATGCGGATGATAGGTCGAGGCCTCGGCTTCGTAGGATCGAT
JMSF027M14+           AGAAACAAGAAGAAGGCCGATGCGGATGATAGGTCGAGGCCTCGGCTTCGTAGGATCGAT
JMSF013D14+           AGAAACAAGAAGAAGGCCGATGCGGATGATAGGTCGAGGCCTCGGCTTCGTAGGATCGAT
                      ____________________________________________________________
consensus             AGAAACAAGAAGAAGGCCGATGCGGATGATAGGTCGAGGCCTCGGCTTCGTAGGATCGAT
 
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JMSF037P16+           TTCCGCCATGGCATCAACCGCCG                                     
JMSF028E17+           TTCCGCCATGGCATCAACCGCCG                                     
JMSF027M14+           TTCCGCCATGGCATCAACCGCCG                                     
JMSF013D14+           TTCCGCCATGGCATCAACCGCCGATAAGGCCGATTGGATCGGCTTCTTCAGTTCCCTTCC
                      ____________________________________________________________
consensus             TTCCGCCATGGCATCAACCGCCGATAAGGCCGATTGGATCGGCTTCTTCAGTTCCCTTCC