Contig 010626:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF027O19Sequence318010626 (2)664001072 (3)gb|AAR18696.1|2e-75auxin transporter protein 1 [Populus tomentosa]
JMSF013C03Sequence320010626 (2)790001072 (3)gb|AAR18696.1|3e-104auxin transporter protein 1 [Populus tomentosa]

Alignment

This contig is upended


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JMFF027O19+                                                    GCACAGCTCGCGGTTGGAT
JMSF013C03+                                                   GGCACAGCTCGCGGTNGGAT
                      ____________________________________________________________
consensus                                                     GGCACAGCTCGCGGTTGGAT
 
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JMFF027O19+           GGCCGTTACAACTTCTTCTAAGGAGCGCTGTTTCCATTGGGGCTATAAATGCAAGCAAAA
JMSF013C03+           GGCCGTTACAACTTCTTCTAAGGAGCGCTGTTTCCATTGGGGCTATAAATGCAAGCAAAA
                      ____________________________________________________________
consensus             GGCCGTTACAACTTCTTCTAAGGAGCGCTGTTTCCATTGGGGCTATAAATGCAAGCAAAA
 
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JMFF027O19+           ACAGTAATATATTATTATCTCTATCTGAATATTCGCAGCTGACGGCGGCAGAGCAATTAT
JMSF013C03+           ACAGTAATATATTATTATCTCTATCTGAATATTCGCAGCTGACGGCGGCAGAGCAATTAT
                      ____________________________________________________________
consensus             ACAGTAATATATTATTATCTCTATCTGAATATTCGCAGCTGACGGCGGCAGAGCAATTAT
 
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JMFF027O19+           TATTAAATGTGGGGAGTCTTGAAATCTTGGAGGGGATAAAAAGACGAGATTTTTAAGAGT
JMSF013C03+           TATTAAATGTGGGGAGTCTTGAAATCTTGGAGGGGATAAAAAGACGAGATTTTTAAGAGT
                      ____________________________________________________________
consensus             TATTAAATGTGGGGAGTCTTGAAATCTTGGAGGGGATAAAAAGACGAGATTTTTAAGAGT
 
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JMFF027O19+           GCAGAAACGAAACGAAGCGAAAAGGCTGGCTTATTGAATACACTAACGCAGCCCCCCTAG
JMSF013C03+           GCAGAAACGAAACGAAGCGAAAAGGCTGGCTTATTGAATACACTAACGCAGCCCCCCTAG
                      ____________________________________________________________
consensus             GCAGAAACGAAACGAAGCGAAAAGGCTGGCTTATTGAATACACTAACGCAGCCCCCCTAG
 
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JMFF027O19+           AGCTAGAGAGAGGGTAGAGAGTAGAGAATCAGAGAGAGAGAGAGAGGTGAGGTGGAATC 
JMSF013C03+           AGCTAGAGAGAGGGTAGAGAGTAGAGAATCAGAGAGAGAGAGAGAGGTGAGGTGAAATCC
                      ____________________________________________________________
consensus             AGCTAGAGAGAGGGTAGAGAGTAGAGAATCAGAGAGAGAGAGAGAGGTGAGGTGGAATCC