Contig 010623:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS029E05Sequence612010623 (3)gb|KDO43061.1|1e-124hypothetical protein CISIN_1g0004611mg, partial [Citrus sinensis]
JMSF012I20Sequence385010623 (3)698010623 (3)ref|XP_006854824.1|8e-27hypothetical protein AMTR_s00063p00191490 [Amborella trichopoda] gb|ERN16291.1|

Alignment

This contig is upended


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JMFS029E05+                                                        ACAACTGCTTGAGCA
                      ____________________________________________________________
consensus                                                          ACAACTGCTTGAGCA
 
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JMFS029E05+           AGAGAATTTCTAACAGCAAAACGTTCCCCTGCTTTCCCTCGTACAAATATCTGGCCACCG
                      ____________________________________________________________
consensus             AGAGAATTTCTAACAGCAAAACGTTCCCCTGCTTTCCCTCGTACAAATATCTGGCCACCG
 
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JMFS029E05+           GTTGCTCCATATAAGCATGTATTACCCACTATAGTGGCATCCTCTGGACAAAACCCAGTC
                      ____________________________________________________________
consensus             GTTGCTCCATATAAGCATGTATTACCCACTATAGTGGCATCCTCTGGACAAAACCCAGTC
 
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JMFS029E05+           TTTTCAACAGGAGTGACGACTATTTCTCCACCAGCCATACCCTTCCCCACATAGTCATTA
rJMSF012I20-                                                  CCTTCCCCACATAGTCATTA
                      ____________________________________________________________
consensus             TTTTCAACAGGAGTGACGACTATTTCTCCACCAGCCATACCCTTCCCCACATAGTCATTA
 
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JMFS029E05+           GCTTCTCCTACAAGACGGATGTTCATTCCAGGTGTCAAAAAACAACCAAATGACTGCCCA
rJMSF012I20-          GCTTCTCCTACAAGACGGATGTTCTTTCCAGGTGTCAAAAAACAACCAAATGACTGCCCA
                      ____________________________________________________________
consensus             GCTTCTCCTACAAGACGGATGTTCTTTCCAGGTGTCAAAAAACAACCAAATGACTGCCCA
 
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JMFS029E05+           GCACTCCCTGTGAATGTTATGTTAAGCTGCCCAGCAAAACCAGTGTCACCATATTTCTTC
rJMSF012I20-          CCACTCCCTATGAATGTTATGTTAAGCTACCCAGCAAAACCAGTGTCACCGTATTTCTTC
                      ____________________________________________________________
consensus             GCACTCCCTGTGAATGTTATGTTAAGCTGCCCAGCAAAACCAGTGTCACCGTATTTCTTC
 
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JMFS029E05+           GCAATAACACCAGCTATGCGG-CCACAAGTAGCACGGTCAATATTATAAATTTGAATTGT
rJMSF012I20-          GCAATAACACCAGCTATGCGGTCCACAAGTGGCACGGTCAATATTATAAATTTGAATTGT
                      ____________________________________________________________
consensus             GCAATAACACCAGCTATGCGGTCCACAAGTGGCACGGTCAATATTATAAATTTGAATTGT
 
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JMFS029E05+           TTTGTTCACCACCTTTTCATTCTCAATTGCATCAGATAACTCTGGATCAGACAGTAGAAC
rJMSF012I20-          TTTGTTCACCACCTTTTCATTCTCAATTGCATCAGATAACTCTGGGTCAGACAGTAGAAC
                      ____________________________________________________________
consensus             TTTGTTCACCACCTTTTCATTCTCAATTGCATCAGATAACTCTGGGTCAGACAGTAGAAC
 
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JMFS029E05+           TTCATCAAGAACAGGACCATTGCTATGAA--CCTCCTGGTTCCTTATCATAGTACTGCTC
rJMSF012I20-          TTCATCAAGAACAGGACCATTGCTATGAACCCCTCCTGGTTCCTTATCATTGTACTACTC
                      ____________________________________________________________
consensus             TTCATCAAGAACAGGACCATTGCTATGAACCCCTCCTGGTTCCTTATCATTGTACTGCTC
 
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JMFS029E05+           CATTTGGGCATACCAACATT                                        
rJMSF012I20-          TGTTTGGGCATACCAACATTTTGGATGATGAACCGCCTGCGGGCGTGGCACCCACCCCAA
                      ____________________________________________________________
consensus             TGTTTGGGCATACCAACATTTTGGATGATGAACCGCCTGCGGGCGTGGCACCCACCCCAA
 
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rJMSF012I20-          CCCCCAATATTTCATAGTATTTTGTGTCCTTTACCATGGGCTTTAAGTGCTAGCAGTTCT
                      ____________________________________________________________
consensus             CCCCCAATATTTCATAGTATTTTGTGTCCTTTACCATGGGCTTTAAGTGCTAGCAGTTCT
 
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rJMSF012I20-          GCTTCGGGGAGAGAGTGCAATTGTGATTGAAGTCATCGATGAAAGCCAAAGACGAATCCT
                      ____________________________________________________________
consensus             GCTTCGGGGAGAGAGTGCAATTGTGATTGAAGTCATCGATGAAAGCCAAAGACGAATCCT
 
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rJMSF012I20-          GCTGCTGACCAGCCGCTCCTTCATCGTCTTCCACATCCATTCCCACCAGCATCTTCATCT
                      ____________________________________________________________
consensus             GCTGCTGACCAGCCGCTCCTTCATCGTCTTCCACATCCATTCCCACCAGCATCTTCATCT
 
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rJMSF012I20-          TCATTAGCATACTCTCCTATGGTAATTCCACTCTCGGAACTGCAAAAGAGGCAGGCAGCA
JMSF012I20+                                              GGAACTGCAAAAGAGGCAGGCAGCA
                      ____________________________________________________________
consensus             TCATTAGCATACTCTCCTATGGTAATTCCACTCTCGGAACTGCAAAAGAGGCAGGCAGCA
 
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rJMSF012I20-          CCAAGAAAACCAGTAGTATAAAAGACTATGGTGAGAAA                      
JMSF012I20+           CCAAGAAAACCAGTAGTATAAAAGACTATGGTGAGAAAAATAAGAAATAAAGATCAAGAA
                      ____________________________________________________________
consensus             CCAAGAAAACCAGTAGTATAAAAGACTATGGTGAGAAAAATAAGAAATAAAGATCAAGAA
 
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JMSF012I20+           CCTGGTCAGAGAAGTAGATCTTGCAATTTCAGTGCCGCTGTGGAAGGAGGACGACCAAGA
                      ____________________________________________________________
consensus             CCTGGTCAGAGAAGTAGATCTTGCAATTTCAGTGCCGCTGTGGAAGGAGGACGACCAAGA
 
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JMSF012I20+           CCCAAATCGTAGATCTAGACCGAGACACAAGCACAAGCGTTCGAGTCTACTGGATCTGTC
                      ____________________________________________________________
consensus             CCCAAATCGTAGATCTAGACCGAGACACAAGCACAAGCGTTCGAGTCTACTGGATCTGTC
 
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JMSF012I20+           GCAGGGGAGGGCGGGGGAGAGGCGGAAGTCGGCATTCGAGTCTGCTGCGTCGTCGCACCA
                      ____________________________________________________________
consensus             GCAGGGGAGGGCGGGGGAGAGGCGGAAGTCGGCATTCGAGTCTGCTGCGTCGTCGCACCA
 
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JMSF012I20+           CGAAGGCGGCTTGGTCCGTTGGTTGCTTGGAGCAGGCGAGGCACGGAGGCGGCGGAGGTT
                      ____________________________________________________________
consensus             CGAAGGCGGCTTGGTCCGTTGGTTGCTTGGAGCAGGCGAGGCACGGAGGCGGCGGAGGTT
 
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JMSF012I20+           AGGGATTTGGATTTTGGAGAGAAGGGTGCGGCGGAGAGAGATAGAAAAGGAGGAAATCTC
                      ____________________________________________________________
consensus             AGGGATTTGGATTTTGGAGAGAAGGGTGCGGCGGAGAGAGATAGAAAAGGAGGAAATCTC