| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFN015L05 | Sequence | 610 | 010621 (9) | ref|XP_004245978.1| | 3e-74 | PREDICTED: ATP-dependent Clp protease proteolytic subunit 4, chloroplastic [Sol | |||||
| JMFS059G03 | Sequence | 622 | 010621 (9) | ref|XP_004245978.1| | 3e-77 | PREDICTED: ATP-dependent Clp protease proteolytic subunit 4, chloroplastic [Sol | |||||
| JMSF003A09 | Sequence | 214 | 010621 (9) | 737 | 010621 (9) | gb|AFK33568.1| | 4e-112 | unknown [Lotus japonicus] | |||
| JMSF012D23 | Sequence | 230 | 010621 (9) | 468 | 010621 (9) | ref|XP_009620714.1| | 1e-29 | PREDICTED: ATP-dependent Clp protease proteolytic subunit 4, chloroplastic [Nic | |||
| JMSF031E09 | Sequence | 657 | 010621 (9) | ref|XP_004245978.1| | 8e-85 | PREDICTED: ATP-dependent Clp protease proteolytic subunit 4, chloroplastic [Sol | 568 | 010621 (9) | gb|AFK33568.1| | 2e-29 | unknown [Lotus japonicus] |
| JMSF039H08 | Sequence | 691 | 010621 (9) | ref|XP_004245978.1| | 5e-91 | PREDICTED: ATP-dependent Clp protease proteolytic subunit 4, chloroplastic [Sol | 248 | 015118 | gb|AFK33568.1| | 7e-12 | unknown [Lotus japonicus] |
This contig is upended
. : . : . : . : . : . :
rJMSF031E09- TATGAGTAGCTCCGCATGACATATTGAGCTATCATACA
____________________________________________________________
consensus TATGAGTAGCTCCGCATGACATATTGAGCTATCATACA
. : . : . : . : . : . :
rJMSF031E09- TTGAATATCCCCTCTGCTTGAGGAAAATAAAAAAGAAAGAAAGAAAGAAAGAAAAACCTA
____________________________________________________________
consensus TTGAATATCCCCTCTGCTTGAGGAAAATAAAAAAGAAAGAAAGAAAGAAAGAAAAACCTA
. : . : . : . : . : . :
rJMSF031E09- AAAAAAAAAAACCAGCATACNTTTCTTTTGGACAAGTAGTTCCATTCCATACNCAATCTT
____________________________________________________________
consensus AAAAAAAAAAACCAGCATACNTTTCTTTTGGACAAGTAGTTCCATTCCATACNCAATCTT
. : . : . : . : . : . :
rJMSF031E09- TCANGTTTCAACCATAACNCTAAATCNCAAANGGGCTCNCCNGNNGNAATCAACCTCAAC
rJMSF012D23- AATCAACCTCANC
rJMSF003A09- GTTTCAACCATAACACTAAATCTCAAATGTGCTCTCCTGCTGCAATCAACCTCAAC
____________________________________________________________
consensus TCANGTTTCAACCATAACACTAAATCTCAAATGTGCTCTCCTGCTGCAATCAACCTCAAC
. : . : . : . : . : . :
rJMSF031E09- TTCAATCTACAAAGCTGATGACTCTGCAAANGCATCANANGCCCCCNCCAANAANANAGA
rJMSF012D23- TTCAATCTACAANGCNGANGACTCNGCAAAGGCATCANANGCCCCCTCCANNAANAGAGA
rJMSF003A09- TTCAATCTACAAAGCTGATGACTATGCAAATGCATCATATGCCCCCTCCAAGAAGAGAGA
____________________________________________________________
consensus TTCAATCTACAAAGCTGATGACTCTGCAAATGCATCATATGCCCCCTCCAAGAAGAGAGA
. : . : . : . : . : . :
rJMSF031E09- TTCAAGAGGCCNGCAAGNGCCATACCAGCTAATACAAT---TCATCAGGGATCNCNGGAT
rJMSF012D23- TTCAAGAGGCCNGCANGNGCCATACCAGCTAANACAATTCATCATCAGGGATCTCNGGAT
rJMSF003A09- TTCAAGAGGCCTGCAAGTGCCATACCAGCTAATACAATTCATCATCAGGGATCTCTGGAT
____________________________________________________________
consensus TTCAAGAGGCCTGCAAGTGCCATACCAGCTAATACAATTCATCATCAGGGATCTCTGGAT
. : . : . : . : . : . :
rJMSF031E09- TAANAAATTTCTTTGGATCTTTAGGGACTTCCNCATAGCTAAGNGNAGCATTAACCCGAT
rJMSF012D23- TAANAAATTTCTTNGGATCTTTAGGGACTTCCNCATAGCTAAGGGTANCATTAACCCGAT
rJMSF003A09- TAAGAAATTTCTTTGGATCTTTAGTGACTTCCTCATAGCTAAGTGTAGCATTAACCCGAT
____________________________________________________________
consensus TAAGAAATTTCTTTGGATCTTTAGGGACTTCCTCATAGCTAAGTGTAGCATTAACCCGAT
. : . : . : . : . : . :
rJMSF031E09- CAGGAACNGGTTCAAGNGCAATAANGCTTTCTTTGNCAATAACTCCNTCAATTATGCCAT
rJMSF012D23- CAGGAACNGGTTCANGNGCAATAANGNTTTCTTNGNCAATAACTCCNTCANTTANGCCAN
rJMSF003A09- CAGGAACTGGTTCAAGTGCAATAATGCTTTCTTTGTCAATAACTCCATCAATTATGCCAT
____________________________________________________________
consensus CAGGAACTGGTTCAAGTGCAATAATGCTTTCTTTGTCAATAACTCCATCAATTATGCCAT
. : . : . : . : . : . :
rJMSF031E09- ATTCCNCNGNTTCAACGGGGGACATATAACGATCCCTATCAATATCTTTCNCAACTTGCT
rJMSF012D23- ATNCCACNGNTTCANCGGGGGACATANAACGATCCCTATNAATATCTTTCTCANCTTGCT
rJMSF003A09- ATTCCACTGCTTCAACGGGGGACATATAACGATCCCTATCAATATCTTTCTCAACTTGCT
____________________________________________________________
consensus ATTCCACTGCTTCAACGGGGGACATATAACGATCCCTATCAATATCTTTCTCAACTTGCT
. : . : . : . : . : . :
rJMSF031E09- CAAATGAGCGGCCAGTAAAATTGGANATTATTCTAANAACATTCNCTTTGT
rJMSF012D23- CAAANGANCGGCCAGNAAAATNGGATATTATTCTAANAACNTTCNCTTTGTNGNGCANGA
rJMSF003A09- CAAATGAGCGGCCAGTAAAATTGGATATTATTCTAATAACATTCTCTTTGTTGTGCATGA
JMSF031E09+ GTTGTGCATGA
JMSF039H08+ ATTGGATATTATTCTAATAACATTCTCTTTGTTGTGCATGA
____________________________________________________________
consensus CAAATGAGCGGCCAGTAAAATTGGATATTATTCTAATAACATTCTCTTTGTTGTGCATGA
. : . : . : . : . : . :
rJMSF012D23- TTTCTCGGGNTNGAATCTCAACANCAATTACTNGCCCACTTGCACCTCCA
rJMSF003A09- TTTCTCGGGCTTGAATCTCAACATCAATTACTTGCCCACTTGCACCTCCAAGTGGTTGAT
JMSF031E09+ TTTCTCGGGCTTGAATCTCAACATCAATTACTTGCCCACTTGCACCTCCAAGTGGTTGAT
JMFS059G03+ TCTCAACATCAATTACTTGCCCACTTGCACCTCCAAGTGGTTGAT
JMFN015L05+ TTACTTGCCCACTTGCACCTCCAAGTGGTTGAT
JMSF039H08+ TTTCTCGGGCTTGAATCTCAACATCAATTACTTGCCCACTTGCACCTCCAAGTGGTTGAT
____________________________________________________________
consensus TTTCTCGGGCTTGAATCTCAACATCAATTACTTGCCCACTTGCACCTCCAAGTGGTTGAT
. : . : . : . : . : . :
rJMSF003A09- GCGTCATAATTCGAGTATTAGGCATTGCCAAACGCTTCCCTTTAGTGCCACCACCAAGGA
JMSF031E09+ GCGTCATAATTCGAGTATTAGGCATTGCCAAACGCTTCCCTTTAGTGCCACCACCAAGGA
JMFS059G03+ GCGTCATAATTCGAGTATTAGGCATTGCCAAACGCTTCCCTTTAGTGCCACCACCAAGGA
JMFN015L05+ GCGTCATAATTCGAGTATTAGGCATTGCCAAACGCTTCCCTTTAGTGCCACCACCAAGGA
JMSF039H08+ GCGTCATAATTCGAGTATTAGGCATTGCCAAACGCTTCCCTTTAGTGCCACCACCAAGGA
____________________________________________________________
consensus GCGTCATAATTCGAGTATTAGGCATTGCCAAACGCTTCCCTTTAGTGCCACCACCAAGGA
. : . : . : . : . : . :
rJMSF003A09- TTATAGAAGCTGTTGAAGCTGAAATGCCTAGGGCAATTGTTGATACATCAGCTCTTAAAA
JMSF031E09+ TTATAGAAGCTGTTGAAGCTGAAATGCCTAGGGCAATTGTTGATACATCAGCTCTTAAAA
JMFS059G03+ TTATAGAAGCTGTTGAAGCTGAAATGCCTAGGGCAATTGTTGATACATCAGCTCTTAAAA
JMFN015L05+ TTATAGAAGCTGTTGAAGCTGAAATGCCTAGGGCAATTGTTGATACATCAGCTCTTAAAA
JMSF039H08+ TTATAGAAGCTGTTGAAGCTGAAATGCCTAGGGCAATTGTTGATACATCAGCTCTTAAAA
____________________________________________________________
consensus TTATAGAAGCTGTTGAAGCTGAAATGCCTAGGGCAATTGTTGATACATCAGCTCTTAAAA
. : . : . : . : . : . :
rJMSF003A09- GCTGGATAACGTCAAAAATAGCCATGCTTGCACTTAGGGAGCCACCAGAACAATTGATGA
JMSF031E09+ GCTGGATAACGTCAAAAATAGCCATGCTTGCACTTAGGGAGCCACCAGAACAATTGATGA
JMFS059G03+ GCTGGATAACGTCAAAAATAGCCATGCTTGCACTTAGGGAGCCACCAGAACAATTGATGA
JMFN015L05+ GCTGGATAACGTCAAAAATAGCCATGCTTGCACTTAGGGAGCCACCAGAACAATTGATGA
JMSF039H08+ GCTGGATAACGTCAAAAATAGCCATGCTTGCACTTAGGGAGCCACCAGAACAATTGATGA
____________________________________________________________
consensus GCTGGATAACGTCAAAAATAGCCATGCTTGCACTTAGGGAGCCACCAGAACAATTGATGA
. : . : . : . : . : . :
rJMSF003A09- ATAGCCTAATGTCTCTAGTGGGGTCCTGAGCATCCNACAGCAGCAACTGGCTGTTAATGG
JMSF031E09+ ATAGCCTAATGTCTCTAGTGGGGTCCTGAGCATCCAACAGCAGCAACTGGCTGTTAATGG
JMFS059G03+ ATAGCCTAATGTCTCTAGTGGGGTCCTGAGCATCCAACAGCAGCAACTGGCTGTTAATGG
JMFN015L05+ ATAGCCTAATGTCTCTAGTGGGGTCCTGAGCATCCAACAGCAGCAACTGGCTGTTAATGG
JMSF039H08+ ATAGCCTAATGTCTCTAGTGGGGTCCTGAGCATCCAACAGCAGCAACTGGCTGTTAATGG
____________________________________________________________
consensus ATAGCCTAATGTCTCTAGTGGGGTCCTGAGCATCCAACAGCAGCAACTGGCTGTTAATGG
. : . : . : . : . : . :
rJMSF003A09- CGTCGGCAACG
JMSF031E09+ CGTCGGCAACGAAGTCGTCGATCTCGTTCCCCAGGAAAACGATTCTCTCCCTGAACAACA
JMFS059G03+ CGTCGGCAACGAAGTCGTCGATCTCGTTCCCCAGGAAAACGATTCTCTCCCTGAACAACA
JMFN015L05+ CGTCGGCAACGAAGTCGTCGATCTCGTTCCCCAGGAAAACGATTCTCTCCCTGAACAACA
JMSF039H08+ CGTCGGCAACGAAGTCGTCGATCTCGTTCCCCAGGAAAACGATTCTCTCCCTGAACAACA
____________________________________________________________
consensus CGTCGGCAACGAAGTCGTCGATCTCGTTCCCCAGGAAAACGATTCTCTCCCTGAACAACA
. : . : . : . : . : . :
JMSF031E09+ GCCCCATGACGTCGGCCTCGGCTCCGCGCATAGCCGTGGCCTGCGTTTGCGGGGCCGAGG
JMFS059G03+ GCCCCATGACGTCGGCCTCGGCTCCGCGCATAGCCGTGGCCTGCGTTTGCGGGGCCGAGG
JMFN015L05+ GCCCCATGACGTCGGCCTCGGCTCCGCGCATAGCCGTGGCCTGCGTTTGCGGGGCCGAGG
JMSF039H08+ GCCCCATGACGTCGGCCTCGGCTCCGCGCATAGCCGTGGCCTGCGTTTGCGGGGCCGAGG
____________________________________________________________
consensus GCCCCATGACGTCGGCCTCGGCTCCGCGCATAGCCGTGGCCTGCGTTTGCGGGGCCGAGG
. : . : . : . : . : . :
JMSF031E09+ CGAGATGGAGGGAGAGCCTATCGCTGTTGCTGAGAAATTGGGATTCGGAGAGGGGTTTCG
JMFS059G03+ CGAGATGGAGGGAGAGCCTATCGCTGTTGCTGAGAAATTGGGATTCGGAGAGGGGTTTCG
JMFN015L05+ CGAGATGGAGGGAGAGCCTATCGCTGTTGCTGAGAAATTGGGATTCGGAGAGGGGTTTCG
JMSF003A09+ CCTATCGCTGTTGCTGAGAAATTGGGATTCGGAGAGGGGTTTCG
JMSF039H08+ CGAGATGGAGGGAGAGCCTATCGCTGTTGCTGAGAAATTGGGATTCGGAGAGGGGTTTCG
JMSF012D23+ GGAGAGCCTATCGCTGTTGCTGAGAAATTGGGATTCGGAGAGGGGTTTCG
____________________________________________________________
consensus CGAGATGGAGGGAGAGCCTATCGCTGTTGCTGAGAAATTGGGATTCGGAGAGGGGTTTCG
. : . : . : . : . : . :
JMSF031E09+ GGGTGGTGGGGAGGTGAGAATCGAGAATGCATTTGATAGAGGGCGGAGTGAACTTGAGAG
JMFS059G03+ GGGTGGTGGGGAGGTGAGAATCGAGAATGCATTTGATAGAGGGCGGAGTGAACTTGAGAG
JMFN015L05+ GGGTGGTGGGGAGGTGAGAATCGAGAATGCATTTGATAGAGGGCGGAGTGAACTTGAGAG
JMSF003A09+ GGGTGGTGGGGAGGTGAGAATCGAGAATGCATTTGATAGAGGGCGGAGTGAACTTGAGAG
JMSF039H08+ GGGTGGTGGGGAGGTGAGAATCGAGAATGCATTTGATAGAGGGCGGAGTGAACTTGAGAG
JMSF012D23+ GGGTGGTGGGGAGGTGAGAATCGAGAATGCATTTGATAGAGGGCGGAGTGAACTTGAGAG
____________________________________________________________
consensus GGGTGGTGGGGAGGTGAGAATCGAGAATGCATTTGATAGAGGGCGGAGTGAACTTGAGAG
. : . : . : . : . : . :
JMSF031E09+ ACGGGTGGCGGAGCAGGCCGTGCCGGCGGAGGCGGAGATGAGTAGAGAGAGATGCGCGGT
JMFS059G03+ ACGGGTGGCGGAGCAGGCCGTGCCGGCGGAGGCGGAGATGAGTAGAGAGAGATGCGCGGT
JMFN015L05+ ACGGGTGGCGGAGCAGGCCGTGCCGGCGGAGGCGGAGATGAGTAGAGAGAGATGCGCGGT
JMSF003A09+ ACGGGTGGCGGAGCAGGCCGTGCCGGCGGAGGCGGAGATGAGTAGAGAGAGATGCGCGGT
JMSF039H08+ ACGGGTGGCGGAGCAGGCCGTGCCGGCGGAGGCGGAGATGAGTAGAGAGAGATGCGCGGT
JMSF012D23+ ACGGGTGGCGGAGCAGGCCGTGCCGGCGGAGGCGGAGATGAGTAGAGAGAGATGCGCGGT
____________________________________________________________
consensus ACGGGTGGCGGAGCAGGCCGTGCCGGCGGAGGCGGAGATGAGTAGAGAGAGATGCGCGGT
. : . : . : . : . : . :
JMSF031E09+ GAGGAGAGAGAGGCGTTGAGAGTAGAGCGAGAGAGTCCATTGTCC
JMFS059G03+ GAGGAGAGAGAGGCGTTGAGAGTAGAGCGAGAGAGTC
JMFN015L05+ GAGGAGAGAGAGGCGTTGAGAGTAGAGCGAGAGAGTC
JMSF003A09+ GAGGAGAGAGAGGCGTTGAGAGTAGAGCGAGAGAGTCCATTGTCC
JMSF039H08+ GAGGAGAGAGAGGCGTTGAGAGTAGAGCGAGAGAGTCCATTGTCC
JMSF012D23+ GAGGAGAGAGAGGCGTTGAGAGTAGAGCGAGAGAGTCCATTGTCCGTTCAGTGAAGCCAA
____________________________________________________________
consensus GAGGAGAGAGAGGCGTTGAGAGTAGAGCGAGAGAGTCCATTGTCCGTTCAGTGAAGCCAA