Contig 010618:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF019K09Sequence557010618 (3)ref|XP_009625421.1|5e-41PREDICTED: novel plant SNARE 13 [Nicotiana tomentosiformis]757002790 (3)ref|XP_004252947.1|4e-105PREDICTED: novel plant SNARE 13-like [Solanum lycopersicum]
JMSF011K12Sequence360010618 (3)723002790 (3)ref|XP_004252947.1|8e-103PREDICTED: novel plant SNARE 13-like [Solanum lycopersicum]
JMSF011N02Sequence308010618 (3)797002790 (3)ref|XP_004252947.1|5e-55PREDICTED: novel plant SNARE 13-like [Solanum lycopersicum]

Alignment

This contig is upended


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JMFF019K09+                                                 GGTGGATTTTTACTCTCCTCGT
                      ____________________________________________________________
consensus                                                   GGTGGATTTTTACTCTCCTCGT
 
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JMFF019K09+           CTTTGATTTCACGATCAAATTCTTTGATTAACCTTTTACATTCCCTCATCTTCCCAGTAA
                      ____________________________________________________________
consensus             CTTTGATTTCACGATCAAATTCTTTGATTAACCTTTTACATTCCCTCATCTTCCCAGTAA
 
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JMFF019K09+           GCTCCTCAAGCTGTTTACTCTGTCTATTAGAGTCTTTGATTTTATCAAGCTTTTGAAATC
                      ____________________________________________________________
consensus             GCTCCTCAAGCTGTTTACTCTGTCTATTAGAGTCTTTGATTTTATCAAGCTTTTGAAATC
 
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JMFF019K09+           CATTTGCGAGGGCTCGGAAATTGTCCCGGATTTCCCCATGGATCTGCTCCATTTGAGGGT
                      ____________________________________________________________
consensus             CATTTGCGAGGGCTCGGAAATTGTCCCGGATTTCCCCATGGATCTGCTCCATTTGAGGGT
 
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JMSF011N02+           TCATCCGCAATTCCAAATTCGCCATGATTGCTGTCTCTCTCTTTCTCCAATCGCTCGCGG
JMFF019K09+           TCATCCGCAATTCCAAATTCGCCATGATTGCTGTCTCTCTCTTTCTCCAATCGCTCGCGG
JMSF011K12+           TCATCCGCAATTCCAANTTCGCCATGATTGCTGTCTCTCTCTTTCTCCAATCGCTCGCGG
                      ____________________________________________________________
consensus             TCATCCGCAATTCCAAATTCGCCATGATTGCTGTCTCTCTCTTTCTCCAATCGCTCGCGG
 
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JMSF011N02+           CCGGCTATGCACCCACTGCCGGAGTAAGAAAACCCTCACCGGCAGATCAAAACTAACTCG
JMFF019K09+           CCGGCTATGCACCCACTGCCGGAGTAAGAAAACCCTCACCGGCAGATCAAAACTAACTCG
JMSF011K12+           CCGGCTATGCACCCACTGCCGGAGTAAGAAAACCCTCACCGGCAGATCAAAACTAACTCG
                      ____________________________________________________________
consensus             CCGGCTATGCACCCACTGCCGGAGTAAGAAAACCCTCACCGGCAGATCAAAACTAACTCG
 
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JMSF011N02+           GCACACACCTTAACACAGGAGAAGAAACTGCGCCGTTTCCTGTGACTCACACCATTCTCG
JMFF019K09+           GCACACACCTTAACACAGGAGAAGAAACTGCGCCGTTTCCTGTGACTCACACCATTCTCG
JMSF011K12+           GCACACACCTTAACACAGGAGAAGAAACTGCGCCGTTTCCTGTGACTCACACCATTCTCG
                      ____________________________________________________________
consensus             GCACACACCTTAACACAGGAGAAGAAACTGCGCCGTTTCCTGTGACTCACACCATTCTCG
 
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JMSF011N02+           CTGTGTTGATGAAGAGTGGTTGTGGTGCACAATCGAGAAGCAGGAGAGAATTAGGATTGT
JMFF019K09+           CTGTGTTGATGAAGAGTGGTTGTGGTGCACAATCGAGAAGCAGGAGAGAATTAGGATTGT
JMSF011K12+           CTGTGTTGATGAAGAGTGGTTGTGGTGCACAATCGAGAAGCAGGAGAGAATTAGGATTGT
                      ____________________________________________________________
consensus             CTGTGTTGATGAAGAGTGGTTGTGGTGCACAATCGAGAAGCAGGAGAGAATTAGGATTGT
 
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JMSF011N02+           GATGAACAGAAAGAGAAAATAAATTTTAAAAAATTGTAATTTGAGATGGTTTAGGGTTCT
JMFF019K09+           GATGAACAGAAAGAGAAAATAAATTTTAAAAAATTGTAATTTGAGATGGTTTAGGGTTCT
JMSF011K12+           GATGAACAGAAAGAGAAAATAAATTTTAAAAAATTGTAATTTGAGATGGTTTAGGGTTCT
                      ____________________________________________________________
consensus             GATGAACAGAAAGAGAAAATAAATTTTAAAAAATTGTAATTTGAGATGGTTTAGGGTTCT
 
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JMFF019K09+           TCGATCAAAGAAGGATAAAGAGAGACAAAGCTGTGAAGATACGAGAGAGAAAGAC     
JMSF011K12+           TCGATCAAAGAAGGATAAAGAGAGACAAAGCTGTGAAGATACGAGAGAGAAAGACAGTCT
                      ____________________________________________________________
consensus             TCGATCAAAGAAGGATAAAGAGAGACAAAGCTGTGAAGATACGAGAGAGAAAGACAGTCT