Contig 010614:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF011F07Sequence193010614 (3)ref|XP_009411683.1|2e-11PREDICTED: pollen-specific leucine-rich repeat extensin-like protein 2 [Musa ac326011303 (3)ref|XP_009611314.1|51.6PREDICTED: uncharacterized protein LOC104104832 [Nicotiana tomentosiformis]
JMSF019J11Sequence493010614 (3)emb|CBI39526.3|2e-27unnamed protein product [Vitis vinifera]772011303 (3)ref|XP_009778243.1|7e-08PREDICTED: circumsporozoite protein [Nicotiana sylvestris]
JMSF044H22Sequence662010614 (3)ref|XP_009778243.1|6e-28PREDICTED: circumsporozoite protein [Nicotiana sylvestris]683011303 (3)ref|XP_009778243.1|2e-08PREDICTED: circumsporozoite protein [Nicotiana sylvestris]

Alignment

This contig is upended


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JMSF044H22+                                                                     CG
                      ____________________________________________________________
consensus                                                                       CG
 
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JMSF044H22+           ACGTTACCGCCGGCTTCGCCGTCCTTTTTCTCCGGCGTGGCAGGTGTTTGAGAACTATTC
                      ____________________________________________________________
consensus             ACGTTACCGCCGGCTTCGCCGTCCTTTTTCTCCGGCGTGGCAGGTGTTTGAGAACTATTC
 
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JMSF044H22+           TCTCCTGTTTCAGGTTTCTTCCCCTCCGATTTTAACTCTTTTGCTCCTTGTAAATTTTCA
                      ____________________________________________________________
consensus             TCTCCTGTTTCAGGTTTCTTCCCCTCCGATTTTAACTCTTTTGCTCCTTGTAAATTTTCA
 
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JMSF019J11+                                                         CGTCTTTAGCCACA
JMSF044H22+           ACACTCTTTCCCTTAGACTCGCCGGCGCCGGCGACACTGTTTCCTTCGTCTTTAGCCACA
                      ____________________________________________________________
consensus             ACACTCTTTCCCTTAGACTCGCCGGCGCCGGCGACACTGTTTCCTTCGTCTTTAGCCACA
 
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JMSF019J11+           CCGCCGCCACTAGCGGTTTCCTCACTACCACCTTCAGTTTTCTTAGCCGGAGGCTCTTGA
JMSF044H22+           CCGCCGCCACTAGCGGTTTCCTCACTACCACCTTCAGTTTTCTTAGCCGGAGGCTCTTGA
                      ____________________________________________________________
consensus             CCGCCGCCACTAGCGGTTTCCTCACTACCACCTTCAGTTTTCTTAGCCGGAGGCTCTTGA
 
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JMSF019J11+           ATCACCACTGCTACTTTCCCCGGTGGTTTGCCGTGGCCGGACGTACAACTATCCTCTTGT
JMSF044H22+           ATCACCACTGCTACTTTCCCCGGTGGTTTGCCGTGGCCGGACGTACAACTATCCTCTTGT
                      ____________________________________________________________
consensus             ATCACCACTGCTACTTTCCCCGGTGGTTTGCCGTGGCCGGACGTACAACTATCCTCTTGT
 
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JMSF019J11+           TTACTTTCGGGTTTCATTTCTTTGGCTTTCTTAACGGCGACGGCGGCCGGAATCCCCTCC
JMSF044H22+           TTACTTTCGGGTTTCATTTCTTTGGCTTTCTTAACGGCGACGGCGGCCGGAATCCCCTCC
                      ____________________________________________________________
consensus             TTACTTTCGGGTTTCATTTCTTTGGCTTTCTTAACGGCGACGGCGGCCGGAATCCCCTCC
 
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JMSF019J11+           CTCGGCGCAACCATCTGCGGCCATAGCTCCGCATTTTTACCGGACTTAACCAGCTTTTTT
JMSF044H22+           CTCGGCGCAACCATCTGCGGCCATAGCTCCGCATTTTTACCGGACTTAACCAGCTTTTTT
                      ____________________________________________________________
consensus             CTCGGCGCAACCATCTGCGGCCATAGCTCCGCATTTTTACCGGACTTAACCAGCTTTTTT
 
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JMSF019J11+           ATCAGAGTATCGGCATGAACGTCGCCGGTTACCACAACCCTTTGCTGTCTTATGTCAATA
JMSF044H22+           ATCAGAGTATCGGCATGAACGTCGCCGGTTACCACAACCCTTTGCTGTCTTATGTCAATA
JMSF011F07+                                                          TCTTATGTCAATA
                      ____________________________________________________________
consensus             ATCAGAGTATCGGCATGAACGTCGCCGGTTACCACAACCCTTTGCTGTCTTATGTCAATA
 
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JMSF019J11+           TCTATACCAGACACACCTGGGACTTGCTGAAGAATTTTCTTGACTTTCTGTTTGCAGCCT
JMSF044H22+           TCTATACCAGACACACCTGGGACTTGCTGAAGAATTTTCTTGACTTTCTGTTTGCAGCCT
JMSF011F07+           TCTATACCAGACACACCTGGGACTTGCTGAAGAATTTTCTTGACTTTCTGTTTGCAGCCT
                      ____________________________________________________________
consensus             TCTATACCAGACACACCTGGGACTTGCTGAAGAATTTTCTTGACTTTCTGTTTGCAGCCT
 
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JMSF019J11+           TCACAGTGAATAGAAACTTTCAAGACCCACATCTTGTGTTTGAGTGGTTCTTGATGGTCT
JMSF044H22+           TCACAGTGAATAGAAACTTTCAAGACCCACATCTTGTGTTTGAGTGGTTCTTGATGGTCT
JMSF011F07+           TCACAGNGAATAGAAACTTTCAAGACCCACATCTTGTGTNTGAGTGGTTCTTGATGGTCT
                      ____________________________________________________________
consensus             TCACAGTGAATAGAAACTTTCAAGACCCACATCTTGTGTTTGAGTGGTTCTTGATGGTCT
 
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JMSF019J11+           -CTGGTGCTGCTGTGTTTGAAGCCATTGCTGATGGGGAGAGAGAGAGAGAGGGAGAGATC
JMSF044H22+           GCTGGTGCTGCTGTGTTTGAAGCCATTGCTGATGGGGAGAGAGAGAGAGAGGGAGAGATC
JMSF011F07+           GCTGGTGCTGCTGTGTTTGAANCCATTGCTGATGGGGAGAGAGAGAGAGAGGGAGAGATC
                      ____________________________________________________________
consensus             GCTGGTGCTGCTGTGTTTGAAGCCATTGCTGATGGGGAGAGAGAGAGAGAGGGAGAGATC