| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFS040G03 | Sequence | 515 | 010611 (6) | emb|CDP14041.1| | 1e-09 | unnamed protein product [Coffea canephora] | |||||
| JMSF010P15 | Sequence | 208 | 010611 (6) | 500 | 010611 (6) | emb|CDP14041.1| | 1e-10 | unnamed protein product [Coffea canephora] | |||
| JMSF028E15 | Sequence | 538 | 010611 (6) | emb|CDP14041.1| | 2e-10 | unnamed protein product [Coffea canephora] | 666 | 011261 (9) | ref|XP_009615900.1| | 3e-94 | PREDICTED: caltractin-like isoform X2 [Nicotiana tomentosiformis] gb|AAF07221.1| |
| JMSF048H11 | Sequence | 501 | 010611 (6) | emb|CDP14041.1| | 2e-10 | unnamed protein product [Coffea canephora] | 461 | 010611 (6) | emb|CDP14041.1| | 2e-10 | unnamed protein product [Coffea canephora] |
This contig is upended
. : . : . : . : . : . :
JMFS040G03+ GCAG
JMSF028E15+ TTTGCAG
____________________________________________________________
consensus TTTGCAG
. : . : . : . : . : . :
JMFS040G03+ AGGAACTGGAATTCTAAATTTTGCAGATTGGTCAATGAATAGTCACAGTTTCAATTAAGC
JMSF048H11+ TTGGTCAATGAATAGTCACAGTTTCAATTAAGC
JMSF028E15+ AGGAACTGGAATTCTAAATTTTGCAGATTGGTCAATGAATAGTCACAGTTTCAATTAAGC
rJMSF010P15- TAGTCACAGTTTCAATTAAGC
____________________________________________________________
consensus AGGAACTGGAATTCTAAATTTTGCAGATTGGTCAATGAATAGTCACAGTTTCAATTAAGC
. : . : . : . : . : . :
JMFS040G03+ AACAAGACTAACAAGCAAAGCATCAGTTCCATATATATAACCAGAAATTACAACCGAAAT
JMSF048H11+ AACAAGACTAACAAGCAAAGCATCAGTTCCATATATATAACCAGAAATTACAACCGAAAT
rJMSF048H11- ACAAGCAAAGCATCAGTTCCATATATATAACCAGAAATTACAACCGAAAT
JMSF028E15+ AACAAGACTAACAAGCAAAGCATCAGTTCCATATATATAACCAGAAATTACAACCGAAAT
rJMSF010P15- AACAAGACTAACAAGCAAAGCATCAGTTCCATATATATAACCAGAAATTACAACCGAAAT
____________________________________________________________
consensus AACAAGACTAACAAGCAAAGCATCAGTTCCATATATATAACCAGAAATTACAACCGAAAT
. : . : . : . : . : . :
JMFS040G03+ AAACTCACAAAATGCATCTGAATCATCAGCTCAAAGACTCGTCAATTTCAATTTTAACCT
JMSF048H11+ AAACTCACAAAATGCATCTGAATCATCAGCTCAAAGACTCGTCAATTTCAATTTTAACCT
rJMSF048H11- AAACTCACAAAATGCATCTGAATCATCAGCTCAAAGACTCGTCAATTTCAATTTTAACCT
JMSF028E15+ AAACTCACAAAATGCATCTGAATCATCAGCTCAAAGACTCGTCAATTTCAATTTTAACCT
rJMSF010P15- AAACTCACAAAATGCATCTGAATCATCAGCTCAAAGACTCGTCAATTTCAATTTTAACCT
____________________________________________________________
consensus AAACTCACAAAATGCATCTGAATCATCAGCTCAAAGACTCGTCAATTTCAATTTTAACCT
. : . : . : . : . : . :
JMFS040G03+ TCGGACCATCATCCAACGGATTCTTCTTCGGTGCTGCCGGTGGAGGCGGAATCCTAGGCG
JMSF048H11+ TCGGACCATCATCCAACGGATTCTTCTTCGGTGCTGCCGGTGGAGGCGGAATCCTAGGCG
rJMSF048H11- TCGGACCATCATCCAACGGATTCTTCTTCGGTGCTGCCGGTGGAGGCGGAATCCTAGGCG
JMSF028E15+ TCGGACCATCATCCAACGGATTCTTCTTCGGTGCTGCCGGTGGAGGCGGAATCCTAGGCG
rJMSF010P15- TCGGACCATCATCCAACGGATTCTTCTTCGGTGCTGCCGGTGGAGGCGGAATCCTAGGCG
____________________________________________________________
consensus TCGGACCATCATCCAACGGATTCTTCTTCGGTGCTGCCGGTGGAGGCGGAATCCTAGGCG
. : . : . : . : . : . :
JMFS040G03+ GTCCTCTCCCCTTCTTCTTGTCCTTCGGCCTCGCATTTCCAAATGAGTGATTGAAACGCT
JMSF048H11+ GTCCTCTCCCCTTCTTCTTGTCCTTCGGCCTCGCATTTCCAAATGAGTGATTGAAACGCT
rJMSF048H11- GTCCTCTCCCCTTCTTCTTGTCCTTCGGCCTCGCATTTCCAAATGAGTGATTGAAACGCT
JMSF028E15+ GTCCTCTCCCCTTCTTCTTGTCCTTCGGCCTCGCATTTCCAAATGAGTGATTGAAACGCT
rJMSF010P15- GTCCTCTCCCCTTCTTCTTGTCCTTCGGCCTCGCATTTCCAAATGAGTGATTGAAACGCT
____________________________________________________________
consensus GTCCTCTCCCCTTCTTCTTGTCCTTCGGCCTCGCATTTCCAAATGAGTGATTGAAACGCT
. : . : . : . : . : . :
JMFS040G03+ TTCCTTTGGCCGTCTTCTTATCTCCTCTTCCACAGTAGATCAATGGAAGGCTAGGAGCGG
JMSF048H11+ TTCCTTTGGCCGTCTTCTTATCTCCTCTTCCACAGTAGATCAATGGAAGGCTAGGAGCGG
rJMSF048H11- TTCCTTTGGCCGTCTTCTTATCTCCTCTTCCACAGTAGATCAATGGAAGGCTAGGAGCGG
JMSF028E15+ TTCCTTTGGCCGTCTTCTTATCTCCTCTTCCACAGTAGATCAATGGAAGGCTAGGAGCGG
rJMSF010P15- TTCCTTTGGCCGTCTTCTTATCTCCTCTTCCACAGTAGATCAATGGAAGGCTAGGAGCGG
JMSF010P15+ ACAGTAGATCAATGGAAGGCTAGGAGCGG
____________________________________________________________
consensus TTCCTTTGGCCGTCTTCTTATCTCCTCTTCCACAGTAGATCAATGGAAGGCTAGGAGCGG
. : . : . : . : . : . :
JMFS040G03+ TGGCGGAGGAAGACAACGACGTCGACGACGTCATCCGAAGAGAACCGCCGGTGAGTGAAC
JMSF048H11+ TGGCGGAGGAAGACAACGACGTCGACGACGTCATCCGAAGAGAACCGCCGGTGAGTGAAC
rJMSF048H11- TGGCGGAGGAAGACAACGACGTCGACGACGTCATCCGAAGAGAACCGCCGGTGAGTGAAC
JMSF028E15+ TGGCGGAGGAAGACAACGACGTCGACGACGTCATCCGAAGAGAACCGCCGGTGAGTGAAC
rJMSF010P15- TGGCGGAGGAAGACAACGACGTCGACGACGTCATCCGAAGAGAACCGCCGGTGAGTGAAC
JMSF010P15+ TGGCGGAGGAAGACAACGACGTCGACGACGTCATCCGAAGAGAACCGCCGGTGAGTGAAC
____________________________________________________________
consensus TGGCGGAGGAAGACAACGACGTCGACGACGTCATCCGAAGAGAACCGCCGGTGAGTGAAC
. : . : . : . : . : . :
JMFS040G03+ GGGAGCTAGAAAAGGAGAGAGTTGAAGCGAGAGCCGCCATTGATTGAGAAGCCATGNGGT
JMSF048H11+ GGGAGCTAGAAAAGGAGAGAGTTGAAGCGAGAGCCGCCATTGATTGAGAAGCCATG-GGT
rJMSF048H11- GGGAGCTAGAAAAGGAGAGAGTTGAAGCGAGAGCCGCCATTGATTGAGAAGCCATG-GGT
JMSF028E15+ GGGAGCTAGAAAAGGAGAGAGTTGAAGCGAGAGCCGCCATTGATTGAGAAGCCATG-GGT
rJMSF010P15- GGGAGCTAGAAAAGGAGAGAGTTGAAGCGAGAGCCGCCATTGATTGAGAAGCCATG-GGT
JMSF010P15+ GGGAGCTAGAAAAGGAGAGAGTTGAAGCGAGAGCCGCCATTGATTGAGAAGCCATG-GGT
____________________________________________________________
consensus GGGAGCTAGAAAAGGAGAGAGTTGAAGCGAGAGCCGCCATTGATTGAGAAGCCATG-GGT
. : . : . : . : . : . :
JMFS040G03+ GCTGCTCCTACTAGCAGTAATGCCATTGAAA
JMSF048H11+ GCTGCTCCTACTAGCAGTAATGCCATTGAAATTGTGTCCC
rJMSF048H11- GCTGCTCCTACTAGCAGTAATGCCATTGAAATTGTGTCCC
JMSF028E15+ GCTGCTCCTACTAGCAGTAATGCCATTGAAATTGTGTCCCAGAAGATTGAG
rJMSF010P15- GCTGCTCCTACTAGCAGTAATGCCATTGAAATTGTGTCCCAGAAGATTGAGGAGTGGACC
JMSF010P15+ GCTGCTCCTACTAGCAGTAATGCCATTGAAATTGTGTCCCAGAAGATTGAGGAGTGGACC
____________________________________________________________
consensus GCTGCTCCTACTAGCAGTAATGCCATTGAAATTGTGTCCCAGAAGATTGAGGAGTGGACC