Contig 010610:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF010P03Sequence301010610 (6)ref|XP_009771175.1|3e-36PREDICTED: 4-hydroxy-tetrahydrodipicolinate synthase, chloroplastic [Nicotiana 721010610 (6)ref|XP_007052027.1|6e-117Dihydrodipicolinate synthase isoform 2 [Theobroma cacao] gb|EOX96184.1| Dihydrod
JMSF011P03Sequence323010610 (6)ref|XP_009771175.1|1e-34PREDICTED: 4-hydroxy-tetrahydrodipicolinate synthase, chloroplastic [Nicotiana 776010610 (6)ref|XP_007052027.1|1e-129Dihydrodipicolinate synthase isoform 2 [Theobroma cacao] gb|EOX96184.1| Dihydrod
JMSF038H19Sequence668010610 (6)ref|XP_009771175.1|6e-114PREDICTED: 4-hydroxy-tetrahydrodipicolinate synthase, chloroplastic [Nicotiana 878010610 (6)ref|XP_007052027.1|2e-168Dihydrodipicolinate synthase isoform 2 [Theobroma cacao] gb|EOX96184.1| Dihydrod

Alignment

This contig is upended


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rJMSF010P03-                                  TATTTTTGTTTGTCGCGATATTCCATTCCCTCCCGG
rJMSF011P03-                                  TATTTTTGTTTGTCGCGATATTCCATTCCCTCCCGG
                      ____________________________________________________________
consensus                                     TATTTTTGTTTGTCGCGATATTCCATTCCCTCCCGG
 
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rJMSF010P03-          CTCAAGAACAAAACATATACGACACTAAAACATCAAACACATTTCAGTGGTGAAGTTCAA
rJMSF011P03-          CTCAAGAACAAAACATATACGACACTAAAACATCAAACACATTTCAGTGGTGAAGTTCAA
                      ____________________________________________________________
consensus             CTCAAGAACAAAACATATACGACACTAAAACATCAAACACATTTCAGTGGTGAAGTTCAA
 
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rJMSF010P03-          CAAAACTTCTGAGTAGTTCTAACCACAATGTGCAGAAAGCTAATAACGTCCAACCAAAAT
rJMSF011P03-          CAAAACTTCTGAGTAGTTCTAACCACAATGTGCAGAAAGCTAATAACGTCCAACCAAAAT
rJMSF038H19-                                       GTGCAGAAAGCTAATAACGTCCAACCAAAAT
                      ____________________________________________________________
consensus             CAAAACTTCTGAGTAGTTCTAACCACAATGTGCAGAAAGCTAATAACGTCCAACCAAAAT
 
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rJMSF010P03-          GAACTCATCATCATCCAGAGCTTCAACATCTTTCTCTCCTACAAAGTTTTCCCGCCCAAT
rJMSF011P03-          GAACTCATCATCATCCAGAGCTTCAACATCTTTCTCTCCTACAAAGTTTTCCCGCCCAAT
rJMSF038H19-          GAACTCATCATCATCCAGAGCTTCAACATCTTTCTCTCCTACAAAGTTTTCCCGCCCAAT
                      ____________________________________________________________
consensus             GAACTCATCATCATCCAGAGCTTCAACATCTTTCTCTCCTACAAAGTTTTCCCGCCCAAT
 
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rJMSF010P03-          ATCGTTCACAATCTTCACAAATTCCTCGCGTTTTTTCTTGGGGAGTGGAACATACGGCAG
rJMSF011P03-          ATCGTTCACAATCTTCACAAATTCCTCGCGTTTTTTCTTGGGGAGTGGAACATACGGCAG
rJMSF038H19-          ATCGTTCACAATCTTCACAAATTCCTCGCGTTTTTTCTTGGGGAGTGGAACATACGGCAG
                      ____________________________________________________________
consensus             ATCGTTCACAATCTTCACAAATTCCTCGCGTTTTTTCTTGGGGAGTGGAACATACGGCAG
 
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rJMSF010P03-          GCGAAATATGGGGCGAGCAACCCCGAGCTGTGCCATGGCTGTGTTCAAGCCAATGGGGTT
rJMSF011P03-          GCGAAATATGGGGCGAGCAACCCCGAGCTGTGCCATGGCTGTGTTCAAGCCAATGGGGTT
rJMSF038H19-          GCGAAATATGGGGCGAGCAACCCCGAGCTGTGCCATGGCTGTGTTCAAGCCAATGGGGTT
                      ____________________________________________________________
consensus             GCGAAATATGGGGCGAGCAACCCCGAGCTGTGCCATGGCTGTGTTCAAGCCAATGGGGTT
 
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rJMSF010P03-          TGGTTCTTCGAAAAGCCATTGGATTAGGGACACGAGCTTGGCGTTCAAACTGGGATTCTT
rJMSF011P03-          TGGTTCTTCGAAAAGCCATTGGATTAGGGACACGAGCTTGGCGTTCAAACTGGGATTCTT
rJMSF038H19-          TGGTTCTTCGAAAAGCCATTGGATTAGGGACACGAGCTTGGCGTTCAAACTGGGATTCTT
                      ____________________________________________________________
consensus             TGGTTCTTCGAAAAGCCATTGGATTAGGGACACGAGCTTGGCGTTCAAACTGGGATTCTT
 
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rJMSF010P03-          CCCTCCGAACATAAGTTCCCGCATCAGACCCGGAACCAAGTTGCTCGTAACGGAAATCAC
rJMSF011P03-          CCCTCCGAACATAAGTTCCCGCATCAGACCCGGAACCAAGTTGCTCGTAACGGAAATCAC
rJMSF038H19-          CCCTCCGAACATAAGTTCCCGCATCAGACCCGGAACCAAGTTGCTCGTAACGGAAATCAC
                      ____________________________________________________________
consensus             CCCTCCGAACATAAGTTCCCGCATCAGACCCGGAACCAAGTTGCTCGTAACGGAAATCAC
 
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rJMSF010P03-          GCCTGTTGCGCCGTGATCCCACCTAGAGTCGTGGCATTGATCATCATTTCCGCTCCAAAC
rJMSF011P03-          GCCTGTTGCGCCGTGATCCCACCTAGAGTCGTGGCATTGATCATCATTTCCGCTCCAAAC
rJMSF038H19-          GCCTGTTGCGCCGTGATCCCACCTAGAGTCGTGGCATTGATCATCATTTCCGCTCCAAAC
                      ____________________________________________________________
consensus             GCCTGTTGCGCCGTGATCCCACCTAGAGTCGTGGCATTGATCATCATTTCCGCTCCAAAC
 
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rJMSF010P03-          GACGATACCTTTGCTTGTGTACTGCTCCACTCGGTCATTTCCTACGCATTCTTTGACGCC
rJMSF011P03-          GACGATACCTTTGCTTGTGTACTGCTCCACTCGGTCATTTCCTACGCATTCTTTGACGCC
rJMSF038H19-          GACGATACCTTTGCTTGTGTACTGCTCCACTCGGTCATTTCCTACGCATTCTTTGACGCC
JMSF038H19+                                       ACTCGGTCATTTCCTACGCATTC-TTGACGCC
                      ____________________________________________________________
consensus             GACGATACCTTTGCTTGTGTACTGCTCCACTCGGTCATTTCCTACGCATTCTTTGACGCC
 
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rJMSF010P03-          AGCCAGGTTAGGGCTCGTCGCCACTGTCTCAATCACGGCAGGTGGAATATCTTGACCGGT
rJMSF011P03-          AGCCAGGTTAGGGCTCGTCGCCACTGTCTCAATCACGGCAGGTGGAATATCTTGACCGGT
rJMSF038H19-          AGCCAGGTTAGGGCTCGTCGCCACTGTCTCAATCACGGCAGGTGGAATATCTTGACCGGT
JMSF038H19+           AGCCAGGTTAGGGCTCGTCGCCACTGTCTCAATCACGGCAGGTGGAATATCTTGACCGGT
                      ____________________________________________________________
consensus             AGCCAGGTTAGGGCTCGTCGCCACTGTCTCAATCACGGCAGGTGGAATATCTTGACCGGT
 
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rJMSF010P03-          TCGTGATGGCACGTTATAGATAATCGTGGGTCCCATCGGGAGCACGCTGTTGAAGTGAGA
rJMSF011P03-          TCGTGATGGCACGTTATAGATAATCGTGGGTCCCATCGGGAGCACGCTGTTGAAGTGAGA
rJMSF038H19-          TCGTGATGGCACGTTATAGATAATCGTGGGTCCCATCGGGAGCACGCTGTTGAAGTGAGA
JMSF038H19+           TCGTGATGGCACGTTATAGATAATCGTGGGTCCCATCGGGAGCACGCTGTTGAAGTGAGA
                      ____________________________________________________________
consensus             TCGTGATGGCACGTTATAGATAATCGTGGGTCCCATCGGGAGCACGCTGTTGAAGTGAGA
 
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rJMSF010P03-          AACCATGCCCTCTAAGGAAGTCTTG                                   
rJMSF011P03-          AACCATGCCCTCTAAGGAAGTCTTGCCGTAGTAGGGATGGATGTGAAGAGCTGCGTGCAT
rJMSF038H19-          AACCATGCCCTCTAAGGAAGTCTTGCCGTAGTAGGGATTGATGTGAAGAGCTGCGTGCAT
JMSF038H19+           AACCATGCCCTCTAAGGAAGTCTTGCCGTAGTAGGGATTGATGTGAAGAGCTGCGTGCAT
                      ____________________________________________________________
consensus             AACCATGCCCTCTAAGGAAGTCTTGCCGTAGTAGGGATTGATGTGAAGAGCTGCGTGCAT
 
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rJMSF011P03-          TCCGACCGCAA                                                 
rJMSF038H19-          TCCGACCGCAAAGCCCTGCTCGGTAGCGTGTATTGCTTCCCTCGTCGAGTTGCTTCCCGT
JMSF038H19+           TCCGACCGCAAAGCCCTGCTCGGTAGCGTGTATTGCTTCCCTCGTCGAGTTGCTTCCCGT
                      ____________________________________________________________
consensus             TCCGACCGCAAAGCCCTGCTCGGTAGCGTGTATTGCTTCCCTCGTCGAGTTGCTTCCCGT
 
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rJMSF038H19-          GTTCCCGATAACCTTGATGGACCCACCAAAACAGTTAACCGTGTGGCCAATGAGCATGAT
JMSF038H19+           GTTCCCGATAACCTTGATGGACCCACCAAAACAGTTAACCGTGTGGCCAATGAGCATGAT
                      ____________________________________________________________
consensus             GTTCCCGATAACCTTGATGGACCCACCAAAACAGTTAACCGTGTGGCCAATGAGCATGAT
 
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rJMSF038H19-          ATGTTCATCCCAGCTCATTAATTGACCCTCACCGGTCGTGCCACCAACGATTACGCCTTC
JMSF038H19+           ATGTTCATCCCAGCTCATTAATTGACCCTCACCGGTCGTGCCACCAACGATTACGCCTTC
JMSF011P03+                                                GTGCCACCAACGATTACGCCTTC
JMSF010P03+                                                                      C
                      ____________________________________________________________
consensus             ATGTTCATCCCAGCTCATTAATTGACCCTCACCGGTCGTGCCACCAACGATTACGCCTTC
 
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rJMSF038H19-          GACACCACTTTCAATCTGCATGTTTACTATCGCATCATATG                   
JMSF038H19+           GACACCACTTTCAATCTGCATGTTTACTATCGCATCATATGCCTCGAGATCAAATCTGCC
JMSF011P03+           GACACCACTTTCAATCTGCATGTTTACTATCGCATCATATGCCTCGAGATCAAATCTGCC
JMSF010P03+           GACACCACTTTCAATCTGCATGTTTACTATCGCATCATATGCCTCGAGATCAAATCTGCC
                      ____________________________________________________________
consensus             GACACCACTTTCAATCTGCATGTTTACTATCGCATCATATGCCTCGAGATCAAATCTGCC
 
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JMSF038H19+           ATCCGGTAGATACGGAGTTTTTATTGCAGTAATCAATCTAAGTGCTTTTATATCCTCAGC
JMSF011P03+           ATCCGGTAGATACGGAGTTTTTATTGCAGTAATCAATCTAAGTGCTTTTATATCCTCAGC
JMSF010P03+           ATCCGGTAGATACGGAGTTTTTATTGCAGTAATCAATCTAAGTGCTTTTATATCCTCAGC
                      ____________________________________________________________
consensus             ATCCGGTAGATACGGAGTTTTTATTGCAGTAATCAATCTAAGTGCTTTTATATCCTCAGC
 
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JMSF038H19+           ATATGTCCTATTTTTAACCTCATTACTCCTCATAGGGAGATGAAAATTGGGAATTACTGC
JMSF011P03+           ATATGTCCTATTTTTAACCTCATTACTCCTCATAGGGAGATGAAAATTGGGAATTACTGC
JMSF010P03+           ATATGTCCTATTTTTAACCTCATTACTCCTCATAGGGAGATGAAAATTGGGAATTACTGC
                      ____________________________________________________________
consensus             ATATGTCCTATTTTTAACCTCATTACTCCTCATAGGGAGATGAAAATTGGGAATTACTGC
 
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JMSF038H19+           AGCTCTGGGAGACCTCCATCTTGCAGTTGTCCTGATAAGCGAAGTTTGGTCGCAGGCCTT
JMSF011P03+           AGCTCTGGGAGACCTCCATCTTGCAGTTGTCCTGATAAGCGAAGTTTGGTCGCAGGCCTT
JMSF010P03+           AGCTCTGGGAGACCTCCATCTTGCAGTTGTCCTGATAAGCGAAGTTTGGTCGCAGGCCTT
                      ____________________________________________________________
consensus             AGCTCTGGGAGACCTCCATCTTGCAGTTGTCCTGATAAGCGAAGTTTGGTCGCAGGCCTT
 
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JMSF038H19+           ACCGGAGAAGACAAGATTGGCGGCCATTCTTGAAG                         
JMSF011P03+           ACCGGAGAAGACAAGATTGGCGGCCATTCTTGAAGTGAGAGCTCAAAGGAGGAGTGCGTC
JMSF010P03+           ACCGGAGAAGACAAGATTGGCGGCCATTCTTGAAGTGAGAGCTCAAAGGAGGAGTGCGTC
                      ____________________________________________________________
consensus             ACCGGAGAAGACAAGATTGGCGGCCATTCTTGAAGTGAGAGCTCAAAGGAGGAGTGCGTC