Contig 010609:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF010O17Sequence301010609 (4)ref|XP_008375608.1|2e-51PREDICTED: cell division control protein 2 homolog [Malus domestica]704010609 (4)ref|XP_009788174.1|9e-110PREDICTED: cell division control protein 2 homolog A-like [Nicotiana sylvestris
JMSF022A16Sequence640010609 (4)gb|AAC41680.1|2e-137protein kinase p34cdc2 [Petroselinum crispum]738010609 (4)ref|XP_009788174.1|4e-116PREDICTED: cell division control protein 2 homolog A-like [Nicotiana sylvestris

Alignment

This contig is upended


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rJMSF010O17-                         AGCATATTCTTACAAGAATATTGAACTGAAAATTACAGGAAAAAA
rJMSF022A16-             TGTCTGTGAACAAGCATATTCTTACAAGAATATTGAACTGAAAATTACAGGAAAAAA
                      ____________________________________________________________
consensus                TGTCTGTGAACAAGCATATTCTTACAAGAATATTGAACTGAAAATTACAGGAAAAAA
 
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rJMSF010O17-          AAAATTGTACCAGAACAATCCTTAATCAAGAGAGGGCATGATGACAAGTTGACAACTCGA
rJMSF022A16-          AAAATTGTACCAGAACAATCCTTAATCAAGAGAGGGCATGATGACAAGTTGACAACTCGA
                      ____________________________________________________________
consensus             AAAATTGTACCAGAACAATCCTTAATCAAGAGAGGGCATGATGACAAGTTGACAACTCGA
 
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rJMSF010O17-          TAAACCACTAATATATATTGGCCCACAAAATAAAAAAAGGTACACTGCATTCCGCTTTAC
rJMSF022A16-          TAAACCACTAATATATATTGGCCCACAAAATAAAAAAAGGTACACTGCATTCCGCTTTAC
                      ____________________________________________________________
consensus             TAAACCACTAATATATATTGGCCCACAAAATAAAAAAAGGTACACTGCATTCCGCTTTAC
 
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rJMSF010O17-          ACATGTATTCAGGATAGAACTAAATTTCAAGGGACAAACCCAATATCCTTGAAGTACCCG
rJMSF022A16-          ACATGTATTCAGGATAGAACTAAATTTCAAGGGACAAACCCAATATCCTTGAAGTACCCG
                      ____________________________________________________________
consensus             ACATGTATTCAGGATAGAACTAAATTTCAAGGGACAAACCCAATATCCTTGAAGTACCCG
 
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rJMSF010O17-          TGTTCAAGGGCACTCCTGGCAGTGATTCTTTTGCTGGGGTCCAAGCANAGCATTTTACTG
rJMSF022A16-          TGTTCAAGGGCACTCCTGGCAGTGATTCTTTTGCTGGGGTCCAAGCAGAGCATTTTACTG
                      ____________________________________________________________
consensus             TGTTCAAGGGCACTCCTGGCAGTGATTCTTTTGCTGGGGTCCAAGCAGAGCATTTTACTG
 
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rJMSF010O17-          AGGAGATCAAGGCCGGATGCATCAAGATTTGGTACCACAGTTGCTAGATCCTTAGGGGGC
rJMSF022A16-          AGGAGATCAAGGCCGGATGCATCAAGATTTGGTACCACAGTTGCTAGATCCTTAGGGGGC
                      ____________________________________________________________
consensus             AGGAGATCAAGGCCGGATGCATCAAGATTTGGTACCACAGTTGCTAGATCCTTAGGGGGC
 
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rJMSF010O17-          CATTTAGGAAAGGAACTTTTGTAGTCAGGCAGAGATGTCACGCCAGGCCATATTTCCTCA
rJMSF022A16-          CATTTAGGAAAGGAACTTTTGTAGTCAGGCAGAGATGTCACGCCAGGCCATATTTCCTCA
                      ____________________________________________________________
consensus             CATTTAGGAAAGGAACTTTTGTAGTCAGGCAGAGATGTCACGCCAGGCCATATTTCCTCA
 
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rJMSF010O17-          TTAGGAGTACCCATCACTCTGAAAATCTTGAANAGCTCATCAATTTCTGAGTCCCCGGGG
rJMSF022A16-          TTAGGAGTACCCATCACTCTGAAAATCTTGAAGAGCTCATCAATTTCTGAGTCCCCGGGG
                      ____________________________________________________________
consensus             TTAGGAGTACCCATCACTCTGAAAATCTTGAAGAGCTCATCAATTTCTGAGTCCCCGGGG
 
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rJMSF010O17-          AAAAGTGCCCGTTGGTTCACCATCTCAGCAAATATGCAACCAACTGACCACACATCAACT
rJMSF022A16-          AAAAGTGCCCGTTGGTTCACCATCTCAGCAAATATGCAACCAACTGACCACACATCAACT
JMSF022A16+                               CATCTCAGCAAATATGCAACCAACTGACCACACATCAACT
                      ____________________________________________________________
consensus             AAAAGTGCCCGTTGGTTCACCATCTCAGCAAATATGCAACCAACTGACCACACATCAACT
 
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rJMSF010O17-          GGAGTAGAATAATGTCGTGATCCAAGCAGTATTTCTGGTGCCCTGTACCATAGTGTCACC
rJMSF022A16-          GGAGTAGAATAATGTCGTGATTCAAGCAGTATTTCTGGTGCCCTGTACCATAGTGTCACC
JMSF022A16+           GGAGTAGAATAATGTCGTGATTCAAGCAGTATTTCTGGTGCCCTGTACCATAGTGTCACC
                      ____________________________________________________________
consensus             GGAGTAGAATAATGTCGTGATTCAAGCAGTATTTCTGGTGCCCTGTACCATAGTGTCACC
 
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rJMSF010O17-          ACCTCATGAGTAAAAGTCCTGACAGGAATGCCGAATGCTCTAGCCAAACCAAAGTCTGCA
rJMSF022A16-          ACCTCATGAGTAAAAGTCCTGACAGGAATGCCGAATGCTCTAGCCAAACCAAAGTCTGCA
JMSF022A16+           ACCTCATGAGTAAAAGTCCTGACAGGAATGCCGAATGCTCTAGCCAAACCAAAGTCTGCA
                      ____________________________________________________________
consensus             ACCTCATGAGTAAAAGTCCTGACAGGAATGCCGAATGCTCTAGCCAAACCAAAGTCTGCA
 
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rJMSF010O17-          AGCTTTAATGCATTCGTACGCTGATCTATCAATAAATTTTGAGGCTTGA           
rJMSF022A16-          AGCTTTAATGCATTCGTACGCTGATCTATCAATAANTTTTGAGGCTTGAGATCTCGATGA
JMSF022A16+           AGCTTTAATGCATTCGTACGCTGATCTATCAATAAATTTTGAGGCTTGAGATCTCGATGA
                      ____________________________________________________________
consensus             AGCTTTAATGCATTCGTACGCTGATCTATCAATAAATTTTGAGGCTTGAGATCTCGATGA
 
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rJMSF022A16-          AGGACTCTATGAAAATGACAA                                       
JMSF022A16+           AGGACTCTATGAGAATGACAATAAGCAATTCCACGGAGTATTTGATACAAAAACATTTTT
                      ____________________________________________________________
consensus             AGGACTCTATGAGAATGACAATAAGCAATTCCACGGAGTATTTGATACAAAAACATTTTT
 
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JMSF022A16+           ATCATACGTGGATTCTTGGAGAAGTCTGGGCAAGAATCCATATGCTTCTTCAAATCCAAA
JMSF010O17+                                                                      A
                      ____________________________________________________________
consensus             ATCATACGTGGATTCTTGGAGAAGTCTGGGCAAGAATCCATATGCTTCTTCAAATCCAAA
 
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JMSF022A16+           TCAAGGTATTCAAATACCAGATATAATCGCCTCTCACTGTGCACCACATCCTGCAACCTG
JMSF010O17+           TCAAGGTATTCAAATACCAGATATAATCGCCTCTCACTGTGCACCACATCCTGCAACCTG
                      ____________________________________________________________
consensus             TCAAGGTATTCAAATACCAGATATAATCGCCTCTCACTGTGCACCACATCCTGCAACCTG
 
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JMSF022A16+           ACAATGTTTCCATGTTGCATCTCTTTTAAGAGGGATATTTCTCTGATAGCAGTGCTAGGA
JMSF010O17+           ACAATGTTTCCATGTTGCATCTCTTTTAAGAGGGATATTTCTCTGATAGCAGTGCTAGGA
                      ____________________________________________________________
consensus             ACAATGTTTCCATGTTGCATCTCTTTTAAGAGGGATATTTCTCTGATAGCAGTGCTAGGA
 
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JMSF022A16+           ACTCCTTCATCTTCCTGCTCCAGTCGAATCTTCTTAAGTGCAATAGTTTCATTTGTTACT
JMSF010O17+           ACTCCTTCATCTTCCTGCTCCAGTCGAATCTTCTTAAGTGCAATAGTTTCATTTGTTACT
                      ____________________________________________________________
consensus             ACTCCTTCATCTTCCTGCTCCAGTCGAATCTTCTTAAGTGCAATAGTTTCATTTGTTACT
 
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JMSF022A16+           CGGTCACGAGCCTTGTATACTACACCATATGTCCCTTCGCCAATCTTCTCAACTTTTTCA
JMSF010O17+           CGGTCACGAGCCTTGTATACTACACCATATGTCCCTTCGCCAATCTTCTCAACTTTTTCA
                      ____________________________________________________________
consensus             CGGTCACGAGCCTTGTATACTACACCATATGTCCCTTCGCCAATCTTCTCAACTTTTTCA
 
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JMSF022A16+           TACTGGTCCATATGGGCAGTGACGAATAATATAGCAGAGATCGAACAAAGAGGAGTGACC
JMSF010O17+           TACTGGTCCATATGGGCAGTGACGAATAATATAGCAGAGATCGAACAAAGAGGAGTGACC
                      ____________________________________________________________
consensus             TACTGGTCCATATGGGCAGTGACGAATAATATAGCAGAGATCGAACAAAGAGGAGTGACC