Contig 010606:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF047P20Sequence640010606 (2)ref|XP_009623407.1|280PREDICTED: polyadenylate-binding protein 7-like [Nicotiana tomentosiformis]596008372 (3)ref|XP_007204038.1|7e-41hypothetical protein PRUPE_ppa020841mg [Prunus persica] gb|EMJ05237.1| hypotheti
JMSF010M07Sequence261010606 (2)ref|XP_003554408.1|65.1PREDICTED: polyadenylate-binding protein 7-like [Glycine max]701008372 (3)ref|XP_002264613.1|7e-56PREDICTED: polyadenylate-binding protein 7 [Vitis vinifera] emb|CBI30200.3| unna

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF047P20+                                                          GTAAAATGCGCTC
                      ____________________________________________________________
consensus                                                            GTAAAATGCGCTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF047P20+           ACTCTTTTGATAAACTGGCCTACATACAGCTGCTTTCCCTCAACAAGAGAGCCATTGAGC
                      ____________________________________________________________
consensus             ACTCTTTTGATAAACTGGCCTACATACAGCTGCTTTCCCTCAACAAGAGAGCCATTGAGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF047P20+           TGCTCAATAGAAGCAATAGCAGAGTCCTCAGACTCAAACTGGACAAAGCCATATCCTTTG
                      ____________________________________________________________
consensus             TGCTCAATAGAAGCAATAGCAGAGTCCTCAGACTCAAACTGGACAAAGCCATATCCTTTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF047P20+           CTTTTTCCATCATCAGACATGGCAACTTTACAAGATAAAATATTCCCAAACCTCAGAAAC
                      ____________________________________________________________
consensus             CTTTTTCCATCATCAGACATGGCAACTTTACAAGATAAAATATTCCCAAACCTCAGAAAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF047P20+           ATTTCTTGCAGCTTTGTATTATCGATAACATCACTCAAATTCTTAACGAATACATTCCCT
                      ____________________________________________________________
consensus             ATTTCTTGCAGCTTTGTATTATCGATAACATCACTCAAATTCTTAACGAATACATTCCCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF047P20+           ACTCCACTTCTTCTAATATCAGGATCGCGTCGAGACCAACTAACCCTTATCACTTTTCCA
                      ____________________________________________________________
consensus             ACTCCACTTCTTCTAATATCAGGATCGCGTCGAGACCAACTAACCCTTATCACTTTTCCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF047P20+           TTCAGAGTTGAGTGGTTTTTTAGCTCAATAGCTTGTACAGCATCCTGAGGAGAAATGAAG
                      ____________________________________________________________
consensus             TTCAGAGTTGAGTGGTTTTTTAGCTCAATAGCTTGTACAGCATCCTGAGGAGAAATGAAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF047P20+           TTGACGTAACCGTAGCAGAGTGAGCGACCGGTGGAGGAGTCGCGGCAGACGCGGACGGAG
JMSF010M07+                                                  TCGCGGCAGACGCGGACGGAG
                      ____________________________________________________________
consensus             TTGACGTAACCGTAGCAGAGTGAGCGACCGGTGGAGGAGTCGCGGCAGACGCGGACGGAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF047P20+           TCGAGGCTCTTGAACTCGGAGAAGGCGTCGTAGAGGTGGTCATCGGTGACGTCAGGGTGG
JMSF010M07+           TCGAGGCTCTTGAACTCNGAGAAGGCGTCGTAGAGGTGGTCATCGGTGACGTCAGGGTGG
                      ____________________________________________________________
consensus             TCGAGGCTCTTGAACTCGGAGAAGGCGTCGTAGAGGTGGTCATCGGTGACGTCAGGGTGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF047P20+           AGGTCGCCGACGTATAAGGACGCCGGAGGCGTCGTCACGGGCGTCTGAGGAGCCGCCATT
JMSF010M07+           AGGTCGCCGACGTATAAGGACGCCGGAGGCGTCGTCACGGGCGTCTGAGGAGCCGCCATT
                      ____________________________________________________________
consensus             AGGTCGCCGACGTATAAGGACGCCGGAGGCGTCGTCACGGGCGTCTGAGGAGCCGCCATT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF047P20+           GGTCTCTCCAGCAGAAAACGACGGCG-TGGAGCTCGGAATGCAGCACGTTACTCCAACGG
JMSF010M07+           GGTCTCTCCAGCAGAAAACGACGGCGTTGGAGCTCGGAATGCAGCACGTTACTCCAACGG
                      ____________________________________________________________
consensus             GGTCTCTCCAGCAGAAAACGACGGCGTTGGAGCTCGGAATGCAGCACGTTACTCCAACGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF047P20+           AACACAGATGAGAGAGAGAGAG                                      
JMSF010M07+           AACACAGATGAGAGAGAGAGAGAGAGAGAGGCGTTTGGGTTTGGGAAAAATAAAATAACC
                      ____________________________________________________________
consensus             AACACAGATGAGAGAGAGAGAGAGAGAGAGGCGTTTGGGTTTGGGAAAAATAAAATAACC