| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF008A17 | Sequence | 255 | 010602 (8) | ref|XP_009618059.1| | 1e-05 | PREDICTED: peptide deformylase 1B, chloroplastic [Nicotiana tomentosiformis] | 759 | 010602 (8) | gb|KJB70911.1| | 2e-84 | hypothetical protein B456_011G095500 [Gossypium raimondii] gb|KJB70912.1| hypoth |
| JMSF010G03 | Sequence | 334 | 010602 (8) | ref|XP_009618059.1| | 1e-20 | PREDICTED: peptide deformylase 1B, chloroplastic [Nicotiana tomentosiformis] | 718 | 010602 (8) | ref|XP_006470303.1| | 7e-108 | PREDICTED: peptide deformylase 1B, chloroplastic-like isoform X1 [Citrus sinens |
| JMSF030A04 | Sequence | 672 | 010602 (8) | emb|CDP18330.1| | 6e-104 | unnamed protein product [Coffea canephora] | 734 | 010602 (8) | ref|XP_009618059.1| | 2e-108 | PREDICTED: peptide deformylase 1B, chloroplastic [Nicotiana tomentosiformis] |
| JMSF032A04 | Sequence | 574 | 010602 (8) | ref|XP_009618059.1| | 9e-99 | PREDICTED: peptide deformylase 1B, chloroplastic [Nicotiana tomentosiformis] | 682 | 010602 (8) | ref|XP_006470303.1| | 1e-100 | PREDICTED: peptide deformylase 1B, chloroplastic-like isoform X1 [Citrus sinens |
This contig is upended
. : . : . : . : . : . :
rJMSF008A17- GTATTAAAACTT
____________________________________________________________
consensus GTATTAAAACTT
. : . : . : . : . : . :
rJMSF032A04- A
rJMSF010G03- ACTTGATATATAAAAAGTAAAAGTTTCACATGTTGGTA
rJMSF030A04- ACTTGATATATAAAAAGTAAAAGTTTCACATGTTGGTA
rJMSF008A17- GGTACTTCACCCAATAATGTTAACTTGATATATAAAAAGTAAAAGTTTCACATGTTGGTA
____________________________________________________________
consensus GGTACTTCACCCAATAATGTTAACTTGATATATAAAAAGTAAAAGTTTCACATGTTGGTA
. : . : . : . : . : . :
rJMSF032A04- CAATAAAAAACCGAGGGATTCTANACAAGAAAATNCTCTNATATTCCAAAACTGCAGCAN
rJMSF010G03- CAATAAAAAACCTAGGGATTCTAGACAAGAAAATTCTCTAATATTCCAAAACTGCAGCAA
rJMSF030A04- CAATAAAAAACCTAGGGATTCTAGACAAGAAAATTCTCTAATATTCCAAAACTGCAGCAA
rJMSF008A17- CAATAAAAAACCTAGGGATTCTAGACAAGAAAATTCTCTAATATTCCAAAACTGCAGCAA
____________________________________________________________
consensus CAATAAAAAACCTAGGGATTCTAGACAAGAAAATTCTCTAATATTCCAAAACTGCAGCAA
. : . : . : . : . : . :
rJMSF032A04- CTCACAANTTCCAGNGTTCTTCATGATTTTCCAAATCCAACACCAGCCTGCCTTCTTTTG
rJMSF010G03- CTCACAATTTCCAGTGTTCTTCATGATTTTCCAAATCCAACACCAGCCTGCCTTCTTTTG
rJMSF030A04- CTCACAATTTCCAGTGTTCTTCATGATTTTCCAAATCCAACACCAGCCTGCCTTCTTTTG
rJMSF008A17- CTCACAATTTCCAGTGTTCTTCATGATTTTCCAAATCCAACACCAGCCTGCCTTCTTTTG
____________________________________________________________
consensus CTCACAATTTCCAGTGTTCTTCATGATTTTCCAAATCCAACACCAGCCTGCCTTCTTTTG
. : . : . : . : . : . :
rJMSF032A04- NGGGTATTTATCCGGGTATTTATCCTTTCAGGGCTTGGCAGCCCAGTGCTGTCCTCATAT
rJMSF010G03- CGGGTATTTATCCGGGTATTTATCCTTTCAGGGCTTGGCAGCCCAGTGCTGTCCTCATAT
rJMSF030A04- CGGGTATTTATCCGGGTATTTATCCTTTCAGGGCTTGGCAGCCCAGTGCTGTCCTCATAT
rJMSF008A17- CGGGTATTTATCCGGGTATTTATACTTTCAGGGCTTGGCAGCCCAGTGCTGTCCTCATAT
____________________________________________________________
consensus CGGGTATTTATCCGGGTATTTATCCTTTCAGGGCTTGGCAGCCCAGTGCTGTCCTCATAT
. : . : . : . : . : . :
rJMSF032A04- TTCTTTTCCAAAGCCTCTAAATTTTCCCGCACAGTGTCTAGGACTTCATCAGACATTCGG
rJMSF010G03- TTCTTTTCCAAAGCCTCTAAATTTTCCCGCACAGTGTCTAGGACTTCATCAGACATTCGG
rJMSF030A04- TTCTTTTCCAAAGCCTCTAAATTTTCCCGCACAGTGTCTAGGACTTCATCAGACATTCGG
rJMSF008A17- TTCTTTTCCAAAGCCTCTAAATTTTCCCGCACAGTGTCTAGGACTTCATCAGACATTCGG
____________________________________________________________
consensus TTCTTTTCCAAAGCCTCTAAATTTTCCCGCACAGTGTCTAGGACTTCATCAGACATTCGG
. : . : . : . : . : . :
rJMSF032A04- TCAAAGAAAAGAATTCCCTGCANATGATCATATTCATGCTGGAAGACCCGTGCAGGAAGC
rJMSF010G03- TCAAAGAAAAGAATTCCCTGCAAATGATCATATTCATGCTGGAAGACCCGTGCAGGAAGC
rJMSF030A04- TCAAAGAAAAGAATTCCCTGCAAATGATCATATTCATGCTGGAAGACCCGTGCAGGAAGC
rJMSF008A17- TCAAAGAAAAGAATTCCCTGCAAATGATCATATTCATGCTGGAAGACCCGTGCAGGAAGC
JMSF032A04+ AAATGATCATATTCATGCTGGAAGACCCGTGCAGGAAGC
JMSF030A04+ ATGATCATATTCATGCTGGAAGACCCGTGCAGGAAGC
____________________________________________________________
consensus TCAAAGAAAAGAATTCCCTGCAAATGATCATATTCATGCTGGAAGACCCGTGCAGGAAGC
. : . : . : . : . : . :
rJMSF032A04- CTTGTCNATCCAACTGTAAACCTTGCCCCATTTATATCCTGTGCATCTACGTTCACAGAA
rJMSF010G03- CTTGTCAATCCAACTGTAAACCTTGCCCCATTTATATCCTGTGCATCTACGTTCACAGAA
rJMSF030A04- CTTGTCAATCCAACTGTAAACCTTGCCCCATTTATATCCTGTGCATCTACGTTCACAGAA
rJMSF008A17- CTTGTCAATCCAACTGTAAACCTTGCCCCATT--TATCCTGTGCATCTACGTTCACAGAA
JMSF032A04+ CTTGTCAATCCAACTGTAAACCTTGCCCCATTTATATCCTGTGCATCTACGTTCACAGAA
JMSF030A04+ CTTGTCAATCCAACTGTAAACCTTGCCCCATTTATATCCTGTGCATCTACGTTCACAGAA
____________________________________________________________
consensus CTTGTCAATCCAACTGTAAACCTTGCCCCATTTATATCCTGTGCATCTACGTTCACAGAA
. : . : . : . : . : . :
rJMSF032A04- TCTGGTCTCTCTACATCAGCATAAATCCCAGGANAAGATAAGCAACCTTCATTATATGGC
rJMSF010G03- TCTGGTCTCTCTACATCAGCATAAATCCCAGGAAAAGATAAGCAACCTTCATTATATGGC
rJMSF030A04- TCTGGTCTCTCTACATCAGCATAAATCCCAGGAAAAGATAAGCAACCTTCATTATATGGC
rJMSF008A17- TCTGGTCTCTCTACATCAGCATAAATCCCAGGAAAAGATAAGCAACCTTCATTATATGGC
JMSF032A04+ TCTGGTCTCTCTACATCAGCATAAATCCCAGGAAAAGATAAGCAACCTTCATTATATGGC
JMSF030A04+ TCTGGTCTCTCTACATCAGCATAAATCCCAGGAAAAGATAAGCAACCTTCATTATATGGC
____________________________________________________________
consensus TCTGGTCTCTCTACATCAGCATAAATCCCAGGAAAAGATAAGCAACCTTCATTATATGGC
. : . : . : . : . : . :
rJMSF032A04- AGCACCTTTCTGGAATATCTGGTGACCCGTGGATTTACAAGAACAATTTCCTCTCCTTCA
rJMSF010G03- AGCACCTTTCTGGAATATCTGGTGACCCGTGGATTTACAAGAACAATTTCCTCTCCTTCA
rJMSF030A04- AGCACCTTTCTGGAATATCTGGTGACCCGTGGATTTACAAGAACAATTTCCTCTCCTTCA
rJMSF008A17- AGCACCTTTCTGGAATATCTGGTGACCCGTGGATTTACAAGAACAATTTCCTCTCCTTCA
JMSF032A04+ AGCACCTTTCTGGAATATCTGGTGACCCGTGGATTTACAAGAACAATTTCCTCTCCTTCA
JMSF030A04+ AGCACCTTTCTGGAATATCTGGTGACCCGTGGATTTACAAGAACAATTTCCTCTCCTTCA
____________________________________________________________
consensus AGCACCTTTCTGGAATATCTGGTGACCCGTGGATTTACAAGAACAATTTCCTCTCCTTCA
. : . : . : . : . : . :
rJMSF032A04- CCCCGCTCACCAACCGGATTAAATACCATAAGCTGAACATTAATTCCAACCTGCGGTGCT
rJMSF010G03- CCCCGCTCACCAACCGGATTAAATACCATAAGCTGAACATTAATTCCAACCTGCGGTGCT
rJMSF030A04- CCCCGCTCACCAACCGGATTAAATACCATAAGCTGAACATTAATTCCAACCTGCGGTGCT
rJMSF008A17- CCCCGCTCACCAACCGGATTAAATACCATAAGCTGAACATTAATTCCAACCTGCGGTGCT
JMSF032A04+ CCCCGCTCACCAACCGGATTAAATACCATAAGCTGAACATTAATTCCAACCTGCGGTGCT
JMSF030A04+ CCCCGCTCACCAACCGGATTAAATACCATAAGCTGAACATTAATTCCAACCTGCGGTGCT
____________________________________________________________
consensus CCCCGCTCACCAACCGGATTAAATACCATAAGCTGAACATTAATTCCAACCTGCGGTGCT
. : . : . : . : . : . :
rJMSF032A04- GACAGCCCAATGCCATCAGTTCTATACATTACATCGAACATTTCATCTACTAGCTTCTTC
rJMSF010G03- GACAGCCCAATGCCATCAGTTCTATACATTACATCGAACATTTCATCTACTAGCTTCTTC
rJMSF030A04- GACAGCCCAATGCCATCAGTTCTATACATTACATCGAACATTTCATCTACTAGCTTCTTC
rJMSF008A17- GACAGCCCAATGCCATCAGTTCTATACATTACATCGAACATTTCATCTACTAGCTTCTTC
JMSF032A04+ GACAGCCCAATGCCATCAGTTCTATACATTACATCGAACATTTCATCTACTAGCTTNTTC
JMSF030A04+ GACAGCCCAATGCCATCAGTTCTATACATTACATCGAACATTTCATCTACTAGCTTCTTC
____________________________________________________________
consensus GACAGCCCAATGCCATCAGTTCTATACATTACATCGAACATTTCATCTACTAGCTTCTTC
. : . : . : . : . : . :
rJMSF032A04- AAATTATCATCAAACGTTNCAATTCTTNTGNTCTTTGCTCTAAGTATAGGATCCGGATAT
rJMSF010G03- AAATTATCATCAAACGTTCCAATTCTTTTGTTCTTTGCTCTAAGTATAGGATCCGGATAT
rJMSF030A04- AAATTATCATCAAACGTTCCAATTCTTTTGTTCTTTGCTCTANGTATAGGATCCGGATAT
rJMSF008A17- AAATTATCATCAAACGTTCCAATTCTTTTGTTCTTTGCTCTAAGTATAGGATCCGGATAT
JMSF032A04+ AAATTATCATCAAACGTTCCAATTCTTTTGTTCTTTGCTCTAAGTATAGGATCCGGATAT
JMSF030A04+ AAATTATCATCAAACGTTCCAATTCTTTTGTTCTTTGCTCTAAGTATAGGATCCGGATAT
JMSF010G03+ TTTGTTCTTTGCTCTAAGTATAGGATCCGGATAT
____________________________________________________________
consensus AAATTATCATCAAACGTTCCAATTCTTTTGTTCTTTGCTCTAAGTATAGGATCCGGATAT
. : . : . : . : . : . :
rJMSF032A04- TCT
rJMSF010G03- TCTACAATTTTCAGAG
rJMSF030A04- TCTACAATTTTCAGANGCCCCTCAAAACA
rJMSF008A17- TCTACAATTTTCAGAGGCCCCTCAAAACA
JMSF032A04+ TCTACAATTTTCAGAGGCCCCTCAAAACACAAATCGGCCAGAGATGCAAGTTCATCCTTG
JMSF030A04+ TCTACAATTTTCAGAGGCCCCTCAAAACACAAATCGGCCAGAGATGCAAGTTCATCCTTG
JMSF008A17+ CTCAAAACACAANTCGGCCAGAGATGCAAGTTCATCCTTG
JMSF010G03+ TCTACAATTTTCAGAGGCCCCTCAAAACACAAATCGGCCAGAGATGCAAGTTCATCCTTG
____________________________________________________________
consensus TCTACAATTTTCAGAGGCCCCTCAAAACACAAATCGGCCAGAGATGCAAGTTCATCCTTG
. : . : . : . : . : . :
JMSF032A04+ ATGACTTTATTNGAAGATAAGNTTNGCCTAGCTTGCGCTCGAACGGCGAGCGGTGAAGGT
JMSF030A04+ ATGACTTTATTCGAAGATAAGCTTCGCCTAGCCTGCGCTCGAACGGCGAGCGGTGAAGGT
JMSF008A17+ ATGACTTTATTCGAAGATAAGCTTCGCCTAGCCTGCGCTCGAACGGCGAGCGGTGAAGGT
JMSF010G03+ ATGACTTTATTCGAAGATAAGCTTCGCCTAGCCTGCGCTCGAACGGCGAGCGGTGAAGGT
____________________________________________________________
consensus ATGACTTTATTCGAAGATAAGCTTCGCCTAGCCTGCGCTCGAACGGCGAGCGGTGAAGGT
. : . : . : . : . : . :
JMSF032A04+ TTATTACGGCTTATGGATTGGAAGGGACGGCCAGTTGACATGAGCCGGCGGGAAT
JMSF030A04+ TTATTACGGCTTATGGAATGGAAGGGACGGCCAGTTGACATGAGCCGGCGGGAATGGAAA
JMSF008A17+ TTATTACGGCTTATGGAATGGAAGGGACGGCCAGTTGACATGAGCCGGCGGGAATAGAAA
JMSF010G03+ TTATTACGGCTTATGGAATGGAAGGGACGGCCAGTTGACATGAGCCGGCGGGAATGGAAA
____________________________________________________________
consensus TTATTACGGCTTATGGAATGGAAGGGACGGCCAGTTGACATGAGCCGGCGGGAATGGAAA
. : . : . : . : . : . :
JMSF030A04+ CAGCTATCGAAGAGCAGAGAATACCGACGAGCCAGCGAGGGAAGAAGAGATTGAAACGAT
JMSF008A17+ CAGCTATCGAAGAGCAGAGAATACCGACGAGCCAGCGAGGGAAGAAGAGATTGAAACGAT
JMSF010G03+ CAGCTATCGAAGAGCAGAGAATACCGACGAGCCAGCGAGGGAAGAAGAGATTGAAACGAT
____________________________________________________________
consensus CAGCTATCGAAGAGCAGAGAATACCGACGAGCCAGCGAGGGAAGAAGAGATTGAAACGAT
. : . : . : . : . : . :
JMSF030A04+ GAGTGGAGCATAGTCGCACCCGCCATCGCCACAT
JMSF008A17+ GAGTGGAGCATAGTCGCACCCGCCATCGCCACAT
JMSF010G03+ GAGTGGAGCATAGTCGCACCCGCCATCGCCACATGAAAGAGGGAAACGGAGCAATAATCT
____________________________________________________________
consensus GAGTGGAGCATAGTCGCACCCGCCATCGCCACATGAAAGAGGGAAACGGAGCAATAATCT