Contig 010593:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF008L19Sequence312010593 (3)ref|XP_009597420.1|5e-26PREDICTED: psbQ-like protein 2, chloroplastic [Nicotiana tomentosiformis]659010593 (3)ref|XP_009597420.1|4e-90PREDICTED: psbQ-like protein 2, chloroplastic [Nicotiana tomentosiformis]
JMSF020D10Sequence681010593 (3)ref|XP_009597420.1|5e-98PREDICTED: psbQ-like protein 2, chloroplastic [Nicotiana tomentosiformis]769001253 (3)ref|NP_001274907.1|9e-107epoxide hydrolase [Solanum tuberosum] gb|AAA81891.1| epoxide hydrolase [Solanum

Alignment

This contig is upended


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rJMSF008L19-                                                 ATTACTTCATAGATTTGACTT
                      ____________________________________________________________
consensus                                                    ATTACTTCATAGATTTGACTT
 
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rJMSF008L19-          CAAAACTAGTGTTGAGGATCTTAGGCCATTTACTCATCACTTCCTGGAGAAGAACTAGAG
JMSF020D10+                              CTTAGGCCATTTACTCATCACTTCCTGGAGAAGAACTAGAG
                      ____________________________________________________________
consensus             CAAAACTAGTGTTGAGGATCTTAGGCCATTTACTCATCACTTCCTGGAGAAGAACTAGAG
 
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rJMSF008L19-          TGCCTTCGTATCGCGATTCCGTTAGAGACAGGTTCCTCTTCTTCACAGCATCCTCAAGCT
JMSF020D10+           TGCCTTCGTATCGCGATTCCGTTAGAGACAGGTTCCTCTTCTTCACAGCATCCTCAAGCT
                      ____________________________________________________________
consensus             TGCCTTCGTATCGCGATTCCGTTAGAGACAGGTTCCTCTTCTTCACAGCATCCTCAAGCT
 
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rJMSF008L19-          CTTCAATGTTGTCAAATAATCTGTTGGCGAGGTCTGTGAGGGGCTGCTTTTCATTTGCTT
JMSF020D10+           CTTCAATGTTGTCAAATAATCTGTTGGCGAGGTCTGTGAGGGGCTGCTTTTCATTTGCTT
                      ____________________________________________________________
consensus             CTTCAATGTTGTCAAATAATCTGTTGGCGAGGTCTGTGAGGGGCTGCTTTTCATTTGCTT
 
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rJMSF008L19-          CAGCGGTGGAGATTACCTTGTCGAAATCGAAGTACATGAAGGTAGCCTTGATGCGCAGAT
JMSF020D10+           CAGCGGTGGAGATTACCTTGTCGAAATCGAAGTACATGAAGGTAGCCTTGATGCGCAGAT
                      ____________________________________________________________
consensus             CAGCGGTGGAGATTACCTTGTCGAAATCGAAGTACATGAAGGTAGCCTTGATGCGCAGAT
 
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rJMSF008L19-          ATCTGAGAACATAGCTCCAAGCATCAGAGCCAATTAGATCCCCCAAAGCCATAAGATCAA
JMSF020D10+           ATCTGAGAACATAGCTCCAAGCATCAGAGCCAATTAGATCCCCCAAAGCCATAAGATCAA
                      ____________________________________________________________
consensus             ATCTGAGAACATAGCTCCAAGCATCAGAGCCAATTAGATCCCCCAAAGCCATAAGATCAA
 
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rJMSF008L19-          AGGCGCACTTGTTTAGCCTGTACATGCTCCCTTTCGTTCCAATATTCGCAATGTACATCT
JMSF020D10+           AGGCGCACTTGTTTAGCCTGTACATGCTCCCTTTCGTTCCAATATTCGCAATGTACATCT
                      ____________________________________________________________
consensus             AGGCGCACTTGTTTAGCCTGTACATGCTCCCTTTCGTTCCAATATTCGCAATGTACATCT
 
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rJMSF008L19-          GATTCTTAACAAACGACCGAGTCCCAGTCTCTTTATTCCTGATATCGCTTGTGACGGTAG
JMSF020D10+           GATTCTTAACAAACGACCGAGTCCCAGTCTCTTTATTCCTGATATCGCTTGTGACGGTAG
JMSF008L19+                                                           TTGTGACGGTAG
                      ____________________________________________________________
consensus             GATTCTTAACAAACGACCGAGTCCCAGTCTCTTTATTCCTGATATCGCTTGTGACGGTAG
 
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rJMSF008L19-          GGATTGGTAAAGGGCCGGTGAGCCAAAAGCCATTATCCTCGGCAAGAGACTTCCCTATGC
JMSF020D10+           GGATTGGTAAAGGGCCGGTGAGCCAAAAGCCATTATCCTCGGCAAGAGACTTCCCTATGC
JMSF008L19+           GGATTGGTAAAGGGCCGGTGAGCCAAAAGCCATTATCCTCGGCAAGAGACTTCCCTATGC
                      ____________________________________________________________
consensus             GGATTGGTAAAGGGCCGGTGAGCCAAAAGCCATTATCCTCGGCAAGAGACTTCCCTATGC
 
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rJMSF008L19-          CGGAGCTTCCGAAAACTGCGATTGAAGCAAGGCCTACTGCTAATCTTCTTTTGGTGACTT
JMSF020D10+           CGGAGCTTCCGAAAACTGCGATTGAAGCAAGGCCTACTGCTAATCTTCTTTTGGTGACTT
JMSF008L19+           CGGAGCTTCCGAAAACTGCGATTGAAGCAAGGCCTACTGCTAATCTTCTTTTGGTGACTT
                      ____________________________________________________________
consensus             CGGAGCTTCCGAAAACTGCGATTGAAGCAAGGCCTACTGCTAATCTTCTTTTGGTGACTT
 
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rJMSF008L19-          CTGGTAGTGGTTGGTTTTCTTGAATCTCCGGCGCCTTCTTATCGGCAAAGTGGATCGCCG
JMSF020D10+           CTGGTAGTGGTTGGTTTTCTTGAATCTCCGGCGCCTTCTTATCGGCAAAGTGGATCGCCG
JMSF008L19+           CTGGTAGTGGTTGGTTTTCTTGAATCTCCGGCGCCTTCTTATCGGCAAAGTGGATCGCCG
                      ____________________________________________________________
consensus             CTGGTAGTGGTTGGTTTTCTTGAATCTCCGGCGCCTTCTTATCGGCAAAGTGGATCGCCG
 
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rJMSF008L19-          CCGCCCTCTTCCGCCTTGCCGTGCCGCCGTGAAGCTTG                      
JMSF020D10+           CCGCCCTCTTCCGCCTTGCCGTGCCGCCGTGAAGCTTGGGATTGAGGGATAGAGCCTCGA
JMSF008L19+           CCGCCCTCTTCCGCCTTGCCGTGCCGCCGTGAAGCTTGGGATTGAGGGATAGAGCCTCGA
                      ____________________________________________________________
consensus             CCGCCCTCTTCCGCCTTGCCGTGCCGCCGTGAAGCTTGGGATTGAGGGATAGAGCCTCGA
 
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JMSF020D10+           GTATGAGGTTGAGATTTGGTATGGCAGCCATGGCTAGCTG                    
JMSF008L19+           GTATGAGGTTGAGATTTGGTATGGCAGCCATGGCTAGCTGGTTTTCAAACTCTGTATGCC
                      ____________________________________________________________
consensus             GTATGAGGTTGAGATTTGGTATGGCAGCCATGGCTAGCTGGTTTTCAAACTCTGTATGCC