Contig 010592:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF008K24Sequence374010592 (2)gb|KDP22490.1|2e-19hypothetical protein JCGZ_26321 [Jatropha curcas]782010592 (2)ref|XP_006358197.1|1e-115PREDICTED: U6 snRNA phosphodiesterase-like [Solanum tuberosum]

Alignment

This contig is upended


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rJMSF008K24-                                                         GCACCATACTTAA
                      ____________________________________________________________
consensus                                                            GCACCATACTTAA
 
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rJMSF008K24-          TCATCATATAATACAATCAAAATGCTAATGTTGTTTGGGGGAAGAATGCTAATGCTGTTA
                      ____________________________________________________________
consensus             TCATCATATAATACAATCAAAATGCTAATGTTGTTTGGGGGAAGAATGCTAATGCTGTTA
 
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rJMSF008K24-          GCTGTAACACAATTACTCTCCATGAAATTTGCATATCTCATAACTTTTATTGCCAATCTT
                      ____________________________________________________________
consensus             GCTGTAACACAATTACTCTCCATGAAATTTGCATATCTCATAACTTTTATTGCCAATCTT
 
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rJMSF008K24-          ACACAAAATGCTACTAAATTTGGTTGTAAAAATGGGCTTCTGTTGTGAACTCCCAACAAG
                      ____________________________________________________________
consensus             ACACAAAATGCTACTAAATTTGGTTGTAAAAATGGGCTTCTGTTGTGAACTCCCAACAAG
 
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rJMSF008K24-          ATATCTCTTCATCTCTTCTTCTACCATCCTCTTCAATGTATCACTGATGTCACCTAATGC
                      ____________________________________________________________
consensus             ATATCTCTTCATCTCTTCTTCTACCATCCTCTTCAATGTATCACTGATGTCACCTAATGC
 
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rJMSF008K24-          CCAAGCTATGGATATATGGGGGCGTGGATCCTTGTAAAATTCAGGAAGATTATGAAGCCT
                      ____________________________________________________________
consensus             CCAAGCTATGGATATATGGGGGCGTGGATCCTTGTAAAATTCAGGAAGATTATGAAGCCT
 
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rJMSF008K24-          ATACACCTCATTAACAGCTTGAATCTGTTTTGTTATCTCAAATAAGCCTCCTTTGACAAC
                      ____________________________________________________________
consensus             ATACACCTCATTAACAGCTTGAATCTGTTTTGTTATCTCAAATAAGCCTCCTTTGACAAC
 
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rJMSF008K24-          TTCCAACGACATAAAAGTGCGAGTGCAATCATCATTCACAAAAATCTCCCATTTGTCGAA
                      ____________________________________________________________
consensus             TTCCAACGACATAAAAGTGCGAGTGCAATCATCATTCACAAAAATCTCCCATTTGTCGAA
 
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rJMSF008K24-          ATTTATCCAATACCTCTTCTGAGATTGCAGCCTCTGACGAAGCATTGAGACTATTGAGTT
                      ____________________________________________________________
consensus             ATTTATCCAATACCTCTTCTGAGATTGCAGCCTCTGACGAAGCATTGAGACTATTGAGTT
 
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rJMSF008K24-          GATCTGGTGTACACGAACGGGAACAGTCCTTCCCAAACTTATATGAAATTCCCTACCTAA
                      ____________________________________________________________
consensus             GATCTGGTGTACACGAACGGGAACAGTCCTTCCCAAACTTATATGAAATTCCCTACCTAA
 
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rJMSF008K24-          GGCAACTTGCTCAAGCTTACTGTTGTCTCTCACCAAACTACTTAAAGGTACATCAACATC
                      ____________________________________________________________
consensus             GGCAACTTGCTCAAGCTTACTGTTGTCTCTCACCAAACTACTTAAAGGTACATCAACATC
 
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rJMSF008K24-          AACAACATTAAGACTGGGAACAAGAGCCGTGACCCTTTCCAAAAACTGAGCCAACTCCTT
JMSF008K24+                                                         TGAGCCAACTCCTT
                      ____________________________________________________________
consensus             AACAACATTAAGACTGGGAACAAGAGCCGTGACCCTTTCCAAAAACTGAGCCAACTCCTT
 
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rJMSF008K24-          CCTCGATGCAGATTGTATATGAACTGGAATGTAAACATGAAGAGCGTAATTGCCTTCTAC
JMSF008K24+           CCTCGATGCAGATNGTATATGAACTGGAATGTAAACATGAAGAGCGTAATTGCCTTCTAC
                      ____________________________________________________________
consensus             CCTCGATGCAGATTGTATATGAACTGGAATGTAAACATGAAGAGCGTAATTGCCTTCTAC
 
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rJMSF008K24-          ATGAGGGAAGCTTCTAACTCGATNGACTTGACTGCTTNGCAAGTAATCA           
JMSF008K24+           ATGAGGGAAGCTTCTAACTCGATTGACTTGACTGCTTTGCAAGTAATCAAACGAACCCAA
                      ____________________________________________________________
consensus             ATGAGGGAAGCTTCTAACTCGATTGACTTGACTGCTTTGCAAGTAATCAAACGAACCCAA
 
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JMSF008K24+           TGAACTGGGCGTGTCAAGTAGAGAGACCGGAGGCGGCGGCAGAGGCGTGAATGTCTCGGC
                      ____________________________________________________________
consensus             TGAACTGGGCGTGTCAAGTAGAGAGACCGGAGGCGGCGGCAGAGGCGTGAATGTCTCGGC
 
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JMSF008K24+           GGCGATGGAAGTGGAGGTGGAGGGCGGAGGAAGAGTGGGATCGGATTCTGAGTCGGAATC
                      ____________________________________________________________
consensus             GGCGATGGAAGTGGAGGTGGAGGGCGGAGGAAGAGTGGGATCGGATTCTGAGTCGGAATC
 
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JMSF008K24+           AGAAGAAACGTCGCCGTATGAGGCTTTCAAGGCATCCATCTTCTCACTTTTCTCATTCCT
                      ____________________________________________________________
consensus             AGAAGAAACGTCGCCGTATGAGGCTTTCAAGGCATCCATCTTCTCACTTTTCTCATTCCT
 
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JMSF008K24+           TAATCGTCACTGATCATCCATTCTAGCTAGAAGCTGAGCAGCTCCCCTGCATTTCCGACC
                      ____________________________________________________________
consensus             TAATCGTCACTGATCATCCATTCTAGCTAGAAGCTGAGCAGCTCCCCTGCATTTCCGACC