| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFN005D03 | Sequence | 526 | 010588 (7) | gb|AIC33041.1| | 9e-33 | 30S ribosomal protein S20, partial [Panax ginseng] | |||||
| JMSF008G12 | Sequence | 302 | 010588 (7) | 711 | 010588 (7) | ref|XP_009776691.1| | 5e-55 | PREDICTED: 30S ribosomal protein S20, chloroplastic isoform X2 [Nicotiana sylve | |||
| JMSF011D14 | Sequence | 364 | 010588 (7) | 781 | 010588 (7) | ref|XP_009789256.1| | 2e-48 | PREDICTED: 30S ribosomal protein S20, chloroplastic-like [Nicotiana sylvestris] | |||
| JMSF016K15 | Sequence | 411 | 010588 (7) | ref|XP_009776691.1| | 1e-11 | PREDICTED: 30S ribosomal protein S20, chloroplastic isoform X2 [Nicotiana sylve | 766 | 010588 (7) | ref|XP_009789256.1| | 2e-48 | PREDICTED: 30S ribosomal protein S20, chloroplastic-like [Nicotiana sylvestris] |
This contig is upended
. : . : . : . : . : . :
JMFN005D03+ TTCTAAACTTGCAAACATGGTGAGCTTTTATAG
____________________________________________________________
consensus TTCTAAACTTGCAAACATGGTGAGCTTTTATAG
. : . : . : . : . : . :
JMFN005D03+ GAAGCATCAGACAACCATTTTATTTAACAAATACAGGAAATGTATGTCATACTGATAGAT
rJMSF008G12- GTATGTCATACTGATAGAT
rJMSF016K15- GTATGTCATACTGATAGAT
rJMSF011D14- GTATGTCATACTGATAGAT
____________________________________________________________
consensus GAAGCATCAGACAACCATTTTATTTAACAAATACAGGAAATGTATGTCATACTGATAGAT
. : . : . : . : . : . :
JMFN005D03+ GAAAGTTTTGGGAAAGGAGAAGCTTGTAAATAGGAGGGACAAACAAGAATAGTGTGTCAT
rJMSF008G12- GAAAGTTTTGGGAAAGGAGAAGCTTGTAAATAGGAGGGACAAACAAGAATAGTGTGTCAT
rJMSF016K15- GAAAGTTTTGGGAAAGGAGAAGCTTGTAAATAGGAGGGACAAACAAGAATAGTGTGTCAT
rJMSF011D14- GAAAGTTTTGGGAAAGGAGAAGCTTGTAAATAGGAGGGACAAACAAGAATAGTGTGTCAT
____________________________________________________________
consensus GAAAGTTTTGGGAAAGGAGAAGCTTGTAAATAGGAGGGACAAACAAGAATAGTGTGTCAT
. : . : . : . : . : . :
JMFN005D03+ TGTGACATGGTTAAAGGGGAAGGAACTCACTCAGGTTTTGAAATAATCCCTCTACACTAG
rJMSF008G12- TGTGACATGGTTAAAGGGGAAGGAACTCACTCAGGTTTTGAAATAATCCCTCTACACTAG
rJMSF016K15- TGTGACATGGTTAAAGGGGAAGGAACTCACTCAGGTTTTGAAATAATCCCTCTACACTAG
rJMSF011D14- TGTGACATGGTTAAAGGGGAAGGAACTCACTCAGGTTTTGAAATAATCCCTCTACACTAG
____________________________________________________________
consensus TGTGACATGGTTAAAGGGGAAGGAACTCACTCAGGTTTTGAAATAATCCCTCTACACTAG
. : . : . : . : . : . :
JMFN005D03+ ACTAGACTAGACTAGACGGTAGCGAGGGGGATAGGTGTGGCATCGGGAGCAGGGGCAGGA
rJMSF008G12- ACTAGACTAGACTAGACGGTAGCGAGGGGGATAGGTGTGGCATCGGGAGCAGGGGCAGGA
rJMSF016K15- ACTAGACTAGACTAGACGGTAGCGAGGGGGATAGGTGTGGCATCGGGAGCAGGGGCAGGA
rJMSF011D14- ACTAGACTAGACTAGACGGTAGCGAGGGGGATAGGTGTGGCATCGGGAGCAGGGGCAGGA
____________________________________________________________
consensus ACTAGACTAGACTAGACGGTAGCGAGGGGGATAGGTGTGGCATCGGGAGCAGGGGCAGGA
. : . : . : . : . : . :
JMFN005D03+ ACATACCAACCGTGGTGAATCTCGACTGCTTTCTTTCTCCTTGCAAGGCGAGATTTCCTC
rJMSF008G12- ACATACCAACCGTGGTGAATCTCGACTGCTTTCTTTCTCCTTGCAAGGCGAGATTTCCTC
rJMSF016K15- ACATACCAACCGTGGTGAATCTCGACTGCTTTCTTTCTCCTTGCAAGGCGAGATTTCCTC
rJMSF011D14- ACATACCAACCGTGGTGAATCTCGACTGCTTTCTTTCTCCTTGCAAGGCGAGATTTCCTC
____________________________________________________________
consensus ACATACCAACCGTGGTGAATCTCGACTGCTTTCTTTCTCCTTGCAAGGCGAGATTTCCTC
. : . : . : . : . : . :
JMFN005D03+ CGTGCTCCTGTGTTCCTGTGAACTGCCCCTGTCTTGATTGCTTTGTCAATGGCTGAATAC
rJMSF008G12- CGTGCTCCTGTGTTCCTGTGAACTGCCCCTGTCTTGATTGCTTTGTCAATGGCTGAATAC
rJMSF016K15- CGTGCTCTTGTGTTCCTGTGAACTGCCCCTGTCTTGATTGCTTTGTCAATGGCTGAATAC
rJMSF011D14- CGTGCTCTTGTGTTCCTGTGAACTGCCCCTGTCTTGATTGCTTTGTCAATGGCTGAATAC
____________________________________________________________
consensus CGTGCTCCTGTGTTCCTGTGAACTGCCCCTGTCTTGATTGCTTTGTCAATGGCTGAATAC
. : . : . : . : . : . :
JMFN005D03+ GCTTCTGCAATTAGTTTCTCAATTTCAACAACTTCGTCTTGCTGTGCATCACGTTTCTTC
rJMSF008G12- GCTTCTGCAATTAGTTTCTCAATTTCAACAACTTCGTCTCGCTGTGCATCACGTTTCTTC
rJMSF016K15- GCTTCTGCAATTAGTTTCTCAATTTCAACAACTTCGTCTTGCTGTGCATCACGTTTCTTC
rJMSF011D14- GCTTCTGCAATTAGTTTCTCAATTTCAACAACTTCGTCTTGCTGTGCATCACGTTTCTTC
____________________________________________________________
consensus GCTTCTGCAATTAGTTTCTCAATTTCAACAACTTCGTCTTGCTGTGCATCACGTTTCTTC
. : . : . : . : . : . :
JMFN005D03+ CTCAGTGCATCTAATGATTCCAAAACCTTCCTCATACGAGTTCTGATCTCAGATTTCTTA
rJMSF008G12- CTCAGTGCATCTAATGATTCCAAAACCTTCCTCATACGAGTTCTGATCTCAGATTTCTTA
rJMSF016K15- CTCAGTGCATCTAATGATTCCAAAACCTTCCTCATACGAGTTCTGATCTCAGATTTCTTA
rJMSF011D14- CTCAGTGCATCTAATGATTCCAAAACCTTCCTCATACGAGTTCTGATCTCAGATTTCTTA
____________________________________________________________
consensus CTCAGTGCATCTAATGATTCCAAAACCTTCCTCATACGAGTTCTGATCTCAGATTTCTTA
. : . : . : . : . : . :
JMFN005D03+ GACTTATTGAAAA
rJMSF008G12- GACTTATTGAAAATACGCCTCTTCTCAGCTTGTCGTGCCCTTTTCGCAGCCGAATCCGCC
rJMSF016K15- GACTTATTGAAAATACGCCTCTTCTCAGCTTGTCGTGCCCTTTTCGCAGCCGAATCCGCC
rJMSF011D14- GACTTATTGAAAATACGCCTCTTCTCAGCTTGTCGTGCCCTTTTCGCAGCCGAATCCGCC
____________________________________________________________
consensus GACTTATTGAAAATACGCCTCTTCTCAGCTTGTCGTGCCCTTTTCGCAGCCGAATCCGCC
. : . : . : . : . : . :
rJMSF008G12- TTCTTCGGCGGGGCAGCTTCGCACACGATAGACCGGCGAAGCGGCCTCTTCTGCATAGGG
rJMSF016K15- TTCTTCGGCGGGGCAGCTTCGCACACGATAGACCGGCGAAGCGGCCTCTTCTGCATAGGG
rJMSF011D14- TTCTTCGGCGGGGCAGCTTCGCACACGATAGACCGGCGAAGCGGCCTCTTCTGCATAGGG
JMSF016K15+ TCTTCGGCGGGGCAGCTTCGCACACGATAGACCGGCGAAGCGGCCTCTTCTGCATAGGG
JMSF011D14+ TGCATAGGG
____________________________________________________________
consensus TTCTTCGGCGGGGCAGCTTCGCACACGATAGACCGGCGAAGCGGCCTCTTCTGCATAGGG
. : . : . : . : . : . :
rJMSF008G12- CTCAGCGAGACAGCCCCGTGGGAGAAGAGATTGAGATTGAGCGAAACGTTGGCCGAGAAG
rJMSF016K15- CTCAGCGAGACAGCCCCGTGGGAGAAGAGATTGAGATTGAGCGAAACGTTGGCCGAGAAG
rJMSF011D14- CTCAGCGAGACAGCCCCGTGGGAGAAGAGATTGAGATTGAGCGAAACGTTGGCCGAGAAG
JMSF016K15+ CTCAGCGAGACAGCCCCGTGGGAGAAGAGATTGAGATTGAGCGAAACGTTGGCCGAGAAG
JMSF011D14+ NTCAGCGAGACAGCCCCGTGGGAGAAGAGATTGAGATTGAGCGAAACGTTGGCCGAGAAG
JMSF008G12+ AG
____________________________________________________________
consensus CTCAGCGAGACAGCCCCGTGGGAGAAGAGATTGAGATTGAGCGAAACGTTGGCCGAGAAG
. : . : . : . : . : . :
rJMSF008G12- CTGAGAGGTCTGAAGAAAGCAGTGGTCCTGCGGTGGGCGGTGTTGAGTGAGAGACTCTGG
rJMSF016K15- CTGAGAGGTCTGAAGAAAGCAGTGGTCCTGCGGTGGGCGGTGTTGAGTGAGAGACTCTGG
rJMSF011D14- CTGAGAGGTCTGAAGAAAGCAGTGGTCCTGCGGTGGGCGGTGTTGAGTGAGAGACTCTGG
JMSF016K15+ CTGAGAGGTCTGAAGAAAGCAGTGGTCCTGCGGTGGGCGGTGTTGAGTGAGAGACTCTGG
JMSF011D14+ CTGAGAGGTCTGAAGAAAGCAGTGGTCCTGCGGTGGGCGGTGTTGAGTGAGAGACTCTGG
JMSF008G12+ CTGAGAGGTCTGAAGAAAGCAGTGGTCCTGCGGTGGGCGGTGTTGAGTGAGAGACTCTGG
____________________________________________________________
consensus CTGAGAGGTCTGAAGAAAGCAGTGGTCCTGCGGTGGGCGGTGTTGAGTGAGAGACTCTGG
. : . : . : . : . : . :
rJMSF008G12- AATTT
rJMSF016K15- AATTT-----TGAGATTCCAACAAGAAGATGAAGGCATACAAGCTGCGGCCATTGCTTAT
rJMSF011D14- AATTT-----TGAGATTCCAACAAGAAGATGAAGGCATACAAGCTGCGGCCATTGCTTAT
JMSF016K15+ AATTT-----TGAGATTCCAACAAGAAGATGAAGGCATACAAGCTGCGGCCATTGCTTAT
JMSF011D14+ AATTT-----TGAGATTCCAACAAGAAGATGAAGGCATACAAGCTGCGGCCATTGCTTAT
JMSF008G12+ AATTTGGCTGTGAGATTCCAACAAGAAGATGAAGGCATACAAGCTGCGGCCATTGCTTAT
____________________________________________________________
consensus AATTT-----TGAGATTCCAACAAGAAGATGAAGGCATACAAGCTGCGGCCATTGCTTAT
. : . : . : . : . : . :
rJMSF016K15- CAGTTGTGTGTTTAGTGTANCTGACTGGCT
rJMSF011D14- CAGTTGTGTGTTTAGTGTANCTGACTGGCTGAAGTGAGGTCCGCT
JMSF016K15+ CAGTTGTGTGTTTAGTGTAGCTGACTGGCTGAGGTGAGGTCCGCTGAGTCGATGAAGTGA
JMSF011D14+ CAGTTGTGTGTTTAGTGTAGCTGACTGGCTGAGGTGAGGTCCGCTGAGTCGATGAAGTGA
JMSF008G12+ CAGTTGTGTGTTTAGTGTAGCTGACTGGCTGAGGTGAGGTCCGCTGAGTCGATGAAGTGA
____________________________________________________________
consensus CAGTTGTGTGTTTAGTGTAGCTGACTGGCTGAGGTGAGGTCCGCTGAGTCGATGAAGTGA
. : . : . : . : . : . :
JMSF016K15+ GGTCTCTGAGCGAGGCGTGAAAGAGTGACCGCCTGGCGGAGAGCGTGAGGGGCAGAGGCG
JMSF011D14+ GGTCTCTGAGCGAGGCGTGAAAGAGTGACCGCCTGGCGGAGAGCGTGAGGGGCAGAGGCG
JMSF008G12+ GGTCTCTGAGCGAGGCGTGAAAGAGTGACCGCCTGGCGGAGAGCGTGAGGGGCAGAGGCG
____________________________________________________________
consensus GGTCTCTGAGCGAGGCGTGAAAGAGTGACCGCCTGGCGGAGAGCGTGAGGGGCAGAGGCG
. : . : . : . : . : . :
JMSF016K15+ GTGAGAGACGAGGGAGAAATGGTGAACCGTGGTGTAGAGGGGGAGAAGCAGAAGCC
JMSF011D14+ GTGAGAGACGAGGGAGAAATGGTGAACCGTGGTGTAGAGGGGGAGAAGCAGAAGCC
JMSF008G12+ GTGAGAGACGAGGGAGAAATGGTGAACCGTGGTGTAGAGGGGGAGAAGCAGAAGCCCTCC
____________________________________________________________
consensus GTGAGAGACGAGGGAGAAATGGTGAACCGTGGTGTAGAGGGGGAGAAGCAGAAGCCCTCC