Contig 010584:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF033M19Sequence149010584 (7)719013831 (6)gb|KHN47122.1|1e-107UPF0051 protein ABCI8, chloroplastic [Glycine soja]
JMFF038P23Sequence510010584 (7)ref|XP_004234480.1|1e-53PREDICTED: UPF0051 protein ABCI8, chloroplastic-like [Solanum lycopersicum]
JMFF043J22Sequence648010584 (7)ref|XP_004234480.1|4e-88PREDICTED: UPF0051 protein ABCI8, chloroplastic-like [Solanum lycopersicum]442013831 (6)ref|XP_004153521.1|3e-35PREDICTED: UPF0051 protein ABCI8, chloroplastic-like, partial [Cucumis sativus]
JMFF046M17Sequence631010584 (7)ref|XP_004234480.1|1e-79PREDICTED: UPF0051 protein ABCI8, chloroplastic-like [Solanum lycopersicum]573013831 (6)gb|KHN47122.1|2e-64UPF0051 protein ABCI8, chloroplastic [Glycine soja]
JMFF049C09Sequence475010584 (7)ref|XP_004234480.1|9e-49PREDICTED: UPF0051 protein ABCI8, chloroplastic-like [Solanum lycopersicum]377013831 (6)ref|XP_004153521.1|6e-33PREDICTED: UPF0051 protein ABCI8, chloroplastic-like, partial [Cucumis sativus]
JMSF007K22Sequence329010584 (7)728013831 (6)gb|KHN47122.1|3e-109UPF0051 protein ABCI8, chloroplastic [Glycine soja]
JMSF034K12Sequence648010584 (7)ref|XP_004234480.1|1e-85PREDICTED: UPF0051 protein ABCI8, chloroplastic-like [Solanum lycopersicum]187013831 (6)ref|XP_004153521.1|2e-10PREDICTED: UPF0051 protein ABCI8, chloroplastic-like, partial [Cucumis sativus]

Alignment

This contig is upended


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JMFF046M17+                                                                     AA
                      ____________________________________________________________
consensus                                                                       AA
 
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JMFF046M17+           CCTATTCCTTTCATTCAAAGGCACACCTAGCTTCTCAAAGTA-TTAATCAGCTCAGGGTC
JMFF043J22+                        TTCAAAGGCACACCTAGCTTCTCAAAGTACTTAATCAGCTCAGGGTC
JMSF034K12+                        TTCAAAGGCACACCTAGCTTCTCAAAGTACTTAATCAGCTCAGGGTC
                      ____________________________________________________________
consensus             CCTATTCCTTTCATTCAAAGGCACACCTAGCTTCTCAAAGTACTTAATCAGCTCAGGGTC
 
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JMFF046M17+           AGCCTCATCTAAACTATTCAAAGTTGGTTTCTTTTTGGGCTCAGAGTAATAGCAGATATC
JMFF043J22+           AGCCTCATCTAAACTATTCAAAGTTGGTTTCTTTTTGGGCTCAGAGTAATAGCAGATATC
JMSF034K12+           AGCCTCATCTAAACTATTCAAAGTTGGTTTCTTTTTGGGCTCAGAGTAATAGCAGATATC
                      ____________________________________________________________
consensus             AGCCTCATCTAAACTATTCAAAGTTGGTTTCTTTTTGGGCTCAGAGTAATAGCAGATATC
 
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JMFF046M17+           CTGAAAATTAATCTCTGGGTACCGATTATCGGACCATTTCGGCTCTTTCATATTCATAAA
JMFF043J22+           CTGAAAATTAATCTCTGGGTACCGATTATCGGACCATTTCGGCTCTTTCATATTCATAAA
JMFF049C09+                                                      TCTTTCATATTCATAAA
JMFF038P23+                                     TATCGGACCATTTCGGCTCTTTCATATTCATAAA
JMSF034K12+           CTGAAAATTAATCTCTGGGTACCGATTATCGGACCATTTCGGCTCTTTCATATTCATAAA
                      ____________________________________________________________
consensus             CTGAAAATTAATCTCTGGGTACCGATTATCGGACCATTTCGGCTCTTTCATATTCATAAA
 
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JMFF046M17+           CCTTTCATATGACTTCAATCTGAACTCAAGCATCCAATCAGGCTCATTCTTCCTGGAAGA
JMFF043J22+           CCTTTCATATGACTTCAATCTGAACTCAAGCATCCAATCAGGCTCATTCTTCCTGGAAGA
JMFF049C09+           CCTTTCATATGACTTCAATCTGAACTCAAGCATCCAATCAGGCTCATTCTTCCTGGAAGA
JMFF038P23+           CCTTTCATATGACTTCAATCTGAACTCAAGCATCCAATCAGGCTCATTCTTCCTGGAAGA
JMSF034K12+           CCTTTCATATGACTTCAATCTGAACTCAAGCATCCAATCAGGCTCATTCTTCCTGGAAGA
                      ____________________________________________________________
consensus             CCTTTCATATGACTTCAATCTGAACTCAAGCATCCAATCAGGCTCATTCTTCCTGGAAGA
 
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JMFF046M17+           AATCAGCCTTATGGTTTCCTCAGATAGCCCCTTTGGCAGCGTAAAGGAGTCTATCTCTTG
JMFF043J22+           AATCAGCCTTATGGTTTCCTCAGATAGCCCCTTTGGCAGCGTAAAGGAGTCTATCTCTTG
JMFF049C09+           AATCAGCCTTATGGTTTCCTCAGATAGCCCCTTTGGCAGCGTAAAGGAGTCTATCTCTTG
JMFF038P23+           AATCAGCCTTATGGTTTCCTCAGATAGCCCCTTTGGCAGCGTAAAGGAGTCTATCTCTTG
JMSF034K12+           AATCAGCCTTATGGTTTCCTCAGATAGCCCCTTTGGCAGCGTAAAGGAGTCTATCTCTTG
                      ____________________________________________________________
consensus             AATCAGCCTTATGGTTTCCTCAGATAGCCCCTTTGGCAGCGTAAAGGAGTCTATCTCTTG
 
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JMFF046M17+           ATTGAAACCCCACTTATAGTCCCTTTTGAGGAATTTCTGAAGCGGGTCGTCTTCGTTAGA
JMFF043J22+           ATTGAAACCCCACTTATAGTCCCTTTTGAGGAATTTCTGAAGCGGGTCGTCTTCGTTAGA
JMFF049C09+           ATTGAAACCCCACTTATAGTCCCTTTTGAGGAATTTCTGAAGCGGGTCGTCTTCGTTAGA
JMFF038P23+           ATTGAAACCCCACTTATAGTCCCTTTTGAGGAATTTCTGAAGCGGGTCGTCTTCGTTAGA
JMSF034K12+           ATTGAAACCCCACTTATAGTCCCTTTTGAGGAATTTCTGATGCGGGTCGTCTTCGTTAGA
                      ____________________________________________________________
consensus             ATTGAAACCCCACTTATAGTCCCTTTTGAGGAATTTCTGAAGCGGGTCGTCTTCGTTAGA
 
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JMFF046M17+           AGTGGAAGGCGAGGGTTGTTTACCTGGGGCGTCAATCGTGACCTTGGCTTCAGCTCTGAC
JMFF043J22+           AGTGGAAGGCGAGGGTTGTTTACCTGGGGCGTCAATCGTGACCTTGGCTTCAGCTCTGAC
JMFF049C09+           AGTGGAAGGCGAGGGTTGTTTACCTGGGGCGTCAATCGTGACCTTGGCTTCAGCTCTGAC
JMFF038P23+           AGTGGAAGGCGAGGGTTGTTTACCTGGGGCGTCAATCGTGACCTTGGCTTCAGCTCTGAC
JMSF034K12+           AGTGGAAGGCGAGGGTTGTTTACCTGGGGCGTCAATCGTGACCTTGGCTTCAGCTCTGAC
                      ____________________________________________________________
consensus             AGTGGAAGGCGAGGGTTGTTTACCTGGGGCGTCAATCGTGACCTTGGCTTCAGCTCTGAC
 
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JMFF046M17+           CTTGAAATTCCTCGGATTCTGGGTTCTGAGATTCGAGGGTTTCGGTAGAACCTGCGAGGC
JMFF043J22+           CTTGAAATTCCTCGGATTCTGGGTTCTGAGATTCGAGGGTTTCGGTAGAACCTGCGAGGC
JMFF049C09+           CTTGAAATTCCTCGGATTCTGGGTTCTGAGATTCGAGGGTTTCGGTAGAACCTGCGAGGC
JMFF038P23+           CTTGAAATTCCTCGGATTCTGGGTTCTGAGATTCGAGGGTTTCGGTAGAACCTGCGAGGC
JMSF034K12+           CTTGAAATTCCTCGGATTCTGGGTTCTGAGATTCGAGGGTTTCGGTAGAACCTGCGAGGC
                      ____________________________________________________________
consensus             CTTGAAATTCCTCGGATTCTGGGTTCTGAGATTCGAGGGTTTCGGTAGAACCTGCGAGGC
 
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JMFF046M17+           TTTTAGCGATTTGGGTGGCTCGCAGACCGGCTGGACTGAGAAGAGTGATATCCCTTTGGT
JMFF043J22+           TTTTAGCGATTTGGGTGGCTCGCAGACCGGCTGGACTGAGAAGAGTGATATCCCTTTGGT
JMFF049C09+           TTTTAGCGATTTGGGTGGCTCGCAGACCGGCTGGACTGAGAAGAGTGATATCCCTTTGGT
JMFF033M19+                                      CGGCTGGACTGAGAAGAGTGATATCCCTTTGGT
JMFF038P23+           TTTTAGCGATTTGGGTGGCTCGCAGACCGGCTGGACTGAGAAGAGTGATATCCCTTTGGT
JMSF034K12+           TTTTAGCGATTTGGGTGGCTCGCAGACCGGCTGGACTGAGAAGAGTGATATCCCTTTGGT
JMSF007K22+                                          TGGACTGAGAAGAGTGATATCCCTTTGGT
                      ____________________________________________________________
consensus             TTTTAGCGATTTGGGTGGCTCGCAGACCGGCTGGACTGAGAAGAGTGATATCCCTTTGGT
 
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JMFF046M17+           GAGGAGAGCCGTCATGGCTGATTAGTGGCGGCGCCGCCGTGCTGCGGTGGTGGGGAAACA
JMFF043J22+           GAGGAGAGCCGTCATGGCTGATTAGTGGCGGCGCCGCCGTGCTGCGGTGGTGGGGAAACA
JMFF049C09+           GAGGAGAGCCGTCATGGCTGATTAGTGGCGGCGCCGCCGTGCTGCGGTGGTGGGGAAACA
JMFF033M19+           GAGGAGAGCCGTCATGGCTGATTAGTGGCGGCGCCGCCGTGCTGCGGTGGTGGGGAAACA
JMFF038P23+           GAGGAGAGCCGTCATGGCTGATTAGTGGCGGCGCCGCCGTGCTGCGGTGGTGGGGAAACA
JMSF034K12+           GAGGAGAGCCGTCATGGCTGATTAGTGGCGGCGCCGCCGTGCTGCGGTGGTGGGGAAACA
JMSF007K22+           GAGGAGAGCCGTCATGGCTGATTAGTGGCGGCGCCGCCGTGCTGCGGTGGTGGGGAAACA
                      ____________________________________________________________
consensus             GAGGAGAGCCGTCATGGCTGATTAGTGGCGGCGCCGCCGTGCTGCGGTGGTGGGGAAACA
 
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JMFF046M17+           AGCGAGAGCGCGGTGGAAATAGGAGGAAGT                              
JMFF043J22+           AGCGAGAGCGCGGTGGAAATAGGAGGAAGTAGGAGGACGAAGATGAAATGTTTAAT    
JMFF049C09+           AGCGAGAGCGCGGTGGAAATAGGAGGAAGTAGGAGGAC                      
JMFF033M19+           AGCGAGAGCGCGGTGGAAATAGGAGGAAGTAGGAGGACGAAGATGAAATGTTTAAT    
JMFF038P23+           AGCGAGAGCGCGGTGGAAATAGGAGGAAGTAGGAGGACGAAGATGAAATGTTTAAT    
JMSF034K12+           AGCGAGAGCGCGGTGGAAATAGGAGGAAGTAGGAGGACGAAGATGAAATGTTTAAT    
JMSF007K22+           AGCGAGAGCGCGGTGGAAATAGGAGGAAGTAGGAGGACGAAGATGAAATGTTTAATGCTT
                      ____________________________________________________________
consensus             AGCGAGAGCGCGGTGGAAATAGGAGGAAGTAGGAGGACGAAGATGAAATGTTTAATGCTT
 
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JMSF007K22+           ATATGTGAACTGAATATTTCTGTTTTTATGGTTTTGGATATTTTGTGACGGTCTTATGCT
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consensus             ATATGTGAACTGAATATTTCTGTTTTTATGGTTTTGGATATTTTGTGACGGTCTTATGCT
 
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JMSF007K22+           GACCACGTGCCCCCCCTATATTATCCGACTTTGCGTATTCCCCCCTTGATTTCTGGATAT
                      ____________________________________________________________
consensus             GACCACGTGCCCCCCCTATATTATCCGACTTTGCGTATTCCCCCCTTGATTTCTGGATAT
 
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JMSF007K22+           TTGAAAATTGAGCCTGCTTAAAATAGGAGTTCGCGACTCACCTAGAGGACGAATTTCACC
                      ____________________________________________________________
consensus             TTGAAAATTGAGCCTGCTTAAAATAGGAGTTCGCGACTCACCTAGAGGACGAATTTCACC