Contig 010572:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF006B14Sequence288010572 (2)ref|XP_004247592.1|4e-30PREDICTED: E3 ubiquitin-protein ligase CHIP [Solanum lycopersicum]239011247 (2)
JMSF006G10Sequence431010572 (2)ref|XP_009773831.1|2e-59PREDICTED: RNA polymerase II-associated protein 3 isoform X2 [Nicotiana sylvest

Alignment

This contig is upended


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JMSF006G10+                                                            GTGGATTGTGC
                      ____________________________________________________________
consensus                                                              GTGGATTGTGC
 
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JMSF006G10+           TTCAATGCAATCTGGAAAGCATCCAGTGCCTCATCATATCGTTCCATTGCCTCCAGTATA
                      ____________________________________________________________
consensus             TTCAATGCAATCTGGAAAGCATCCAGTGCCTCATCATATCGTTCCATTGCCTCCAGTATA
 
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JMSF006G10+           CATCCTTTCCTAAAATAACCCTTTTCCCAGTCTGGCTTCAAACTGATTGTCATCTCTGCA
                      ____________________________________________________________
consensus             CATCCTTTCCTAAAATAACCCTTTTCCCAGTCTGGCTTCAAACTGATTGTCATCTCTGCA
 
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JMSF006B14+             GGCAAGTGCTTTGTTGAGTTTAACCAGGTGTAGAAATGCTGCAGCACGATTGCTGTAA
JMSF006G10+           TCGGCAAGTGCTTTGTTGAGTTTAACCAGGTGTAGAAATGCTGCAGCACGATTGCTGTAA
                      ____________________________________________________________
consensus             TCGGCAAGTGCTTTGTTGAGTTTAACCAGGTGTAGAAATGCTGCAGCACGATTGCTGTAA
 
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JMSF006B14+           AGAGTCGGGTTTGACGGGTCTTTCTTGATGGCCTGAGTGTAGAGAGCAGCGGCTTTGAGA
JMSF006G10+           AGAGTCGGGTTTGACGGGTCTTTCTTGATGGCCTGAGTGTAGAGAGCAGCGGCTTTGAGA
                      ____________________________________________________________
consensus             AGAGTCGGGTTTGACGGGTCTTTCTTGATGGCCTGAGTGTAGAGAGCAGCGGCTTTGAGA
 
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JMSF006B14+           TAGTTCCCAGCTTTGAAGAATTCATTGCCTTGATCTTTCAATGAAACTTCCCGTTTGGCA
JMSF006G10+           TAGTTCCCAGCTTTGAAGAATTCATTGCCTTGATCTTTCAATGAAACTTCCCGTTTGGCA
                      ____________________________________________________________
consensus             TAGTTCCCAGCTTTGAAGAATTCATTGCCTTGATCTTTCAATGAAACTTCCCGTTTGGCA
 
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JMSF006B14+           TCTGAATCTCCCATTGTCGTCTTCCCTTTCAGAAAATTTGCAGAAATTTGGGTTAGGGTT
JMSF006G10+           TCTGAATCTCCCATTGTCGTCTTCCCTTTCAGAAAATTTGCAGAAATTTGGGTTAGGGTT
                      ____________________________________________________________
consensus             TCTGAATCTCCCATTGTCGTCTTCCCTTTCAGAAAATTTGCAGAAATTTGGGTTAGGGTT
 
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JMSF006B14+           TAAGGACTGTTCTTACTTCTTAGGGTTTCTGAGAGCTAAGCTTTCTCCC           
JMSF006G10+           TAAGGACTGTTCTTACTTCTTAGGGTTTCTGAGAGCTAAGCTTTCTCCCGGTTCTAGACC
                      ____________________________________________________________
consensus             TAAGGACTGTTCTTACTTCTTAGGGTTTCTGAGAGCTAAGCTTTCTCCCGGTTCTAGACC