| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF009G17 | Sequence | 590 | 010571 (4) | ref|XP_002285452.1| | 2e-80 | PREDICTED: pre-mRNA-processing factor 19 [Vitis vinifera] emb|CBI23714.3| unname | 751 | 009778 (4) | ref|XP_011091239.1| | 5e-91 | PREDICTED: pre-mRNA-processing factor 19-like [Sesamum indicum] |
| JMFF042O05 | Sequence | 635 | 010571 (4) | ref|XP_002285452.1| | 1e-89 | PREDICTED: pre-mRNA-processing factor 19 [Vitis vinifera] emb|CBI23714.3| unname | 611 | 009778 (4) | emb|CAN74845.1| | 2e-53 | hypothetical protein VITISV_037044 [Vitis vinifera] |
| JMSF006C22 | Sequence | 336 | 010571 (4) | ref|XP_009605789.1| | 2e-42 | PREDICTED: pre-mRNA-processing factor 19 homolog 1-like [Nicotiana tomentosifor | |||||
| JMSF045O21 | Sequence | 684 | 010571 (4) | ref|XP_002285452.1| | 1e-100 | PREDICTED: pre-mRNA-processing factor 19 [Vitis vinifera] emb|CBI23714.3| unname | 652 | 009778 (4) | ref|XP_011091239.1| | 2e-52 | PREDICTED: pre-mRNA-processing factor 19-like [Sesamum indicum] |
This contig is upended
. : . : . : . : . : . :
JMSF045O21+ GTGAAAGGTTAGTATTGCAATCTG
____________________________________________________________
consensus GTGAAAGGTTAGTATTGCAATCTG
. : . : . : . : . : . :
JMSF045O21+ TAAGTTCTGTAATAATAGCTGATGAAATCCCTGGGCGACTTTTCTTGCCTTCAGGACCCA
____________________________________________________________
consensus TAAGTTCTGTAATAATAGCTGATGAAATCCCTGGGCGACTTTTCTTGCCTTCAGGACCCA
. : . : . : . : . : . :
JMSF045O21+ TCTCCTCATCCTCAGCAGCTCTTTTCCCGTTGCTCAATGTGGGAGTATTAGCTGCAGTTG
____________________________________________________________
consensus TCTCCTCATCCTCAGCAGCTCTTTTCCCGTTGCTCAATGTGGGAGTATTAGCTGCAGTTG
. : . : . : . : . : . :
JMFF009G17+ AATTCCCTTGCCTCAT
JMFF042O05+ AATTCCCTTGCCTCAT
JMSF045O21+ CAGTAGCTGCTGTCATGGGTATCTCTCTTTCAGCGTGAGCCAATAATTCCCTTGCCTCAT
____________________________________________________________
consensus CAGTAGCTGCTGTCATGGGTATCTCTCTTTCAGCGTGAGCCAATAATTCCCTTGCCTCAT
. : . : . : . : . : . :
JMFF009G17+ CCCTTTCCTTTTTCAATCTTGCAATTACACGGCATGCGGCATCATGCTGATACAGAGCAT
JMFF042O05+ CCCTTTCCTTTTTCAATCTTGCAATTACACGGCATGCGGCATCATGCTGATACAGAGCAT
JMSF045O21+ CCCTTTCCTTTTTCAATCTTGCAATTACACGGCATGCGGCATCATGCTGATACAGAGCAT
____________________________________________________________
consensus CCCTTTCCTTTTTCAATCTTGCAATTACACGGCATGCGGCATCATGCTGATACAGAGCAT
. : . : . : . : . : . :
JMFF009G17+ GGCTTAACTCCTGCCTTGCAGTATGTAATTGTTGCTCCAATGCAAAGTTTGATAGCATCA
JMFF042O05+ GGCTTAACTCCTGCCTTGCAGTATGTAATTGTTGCTCCAATGCAAAGTTTGATAGCATCA
JMSF045O21+ GGCTTAACTCCTGCCTTGCAGTATGTAATTGTTGCTCCAATGCAAAGTTTGATAGCATCA
____________________________________________________________
consensus GGCTTAACTCCTGCCTTGCAGTATGTAATTGTTGCTCCAATGCAAAGTTTGATAGCATCA
. : . : . : . : . : . :
JMFF009G17+ GACCATCCCATCCAATCTGAAACATTCCCAACATCCCAGGTATACTTGCAGCCTGGACAG
JMFF042O05+ GACCATCCCATCCAATCTGAAACATTCCCAACATCCCAGGTATACTTGCAGCCTGGACAG
JMSF045O21+ GACCATCCCATTCAATCTGAAACATTCCCAACATCCCAGGTATACTTGCAGCCTGGACAG
JMSF006C22+ TTCCCAACATCCCAGGTATACTTGCAGCCTGGACAG
____________________________________________________________
consensus GACCATCCCATCCAATCTGAAACATTCCCAACATCCCAGGTATACTTGCAGCCTGGACAG
. : . : . : . : . : . :
JMFF009G17+ GTCGGGGCTTCACTATCTTTCCAGTTTTAATTGGTACAATGTCATCCATTGTCAGAGGCT
JMFF042O05+ GTCGGGGCTTCACTATCTTTCCAGTTTTAATTGGTACAATGTCATCCATTGTCAGAGGCT
JMSF045O21+ GTCGGGGCTTCACTATCTTTCCAGTTTTAATTGGTACAATGTCATCCATTGTCAGAGGCT
JMSF006C22+ GTCGGGGCTTCACTATCTTTCCAGTTTTAATTGGTACAATGTCATCCATTGTCAGAGGCT
____________________________________________________________
consensus GTCGGGGCTTCACTATCTTTCCAGTTTTAATTGGTACAATGTCATCCATTGTCAGAGGCT
. : . : . : . : . : . :
JMFF009G17+ CTCCAGTTACTGGACATTTTCCATAGTCAGAGATGTGACGTTCGATTAAACGCTTCTCGA
JMFF042O05+ CTCCAGTTACTGGACATTTTCCATAGTCAGAGATGTGACGTTCGATTAAACGCTTCTCGA
JMSF045O21+ CTCCAGTTACTGGACATTTTCCATAGTCAGAGATGTGACGTTCGATTAAACGCTTCTCGA
JMSF006C22+ CTCCAGTTACTGGACATTTTCCATAGTCAGAGATGTGACGTTCGATTAAACGCTTCTCGA
____________________________________________________________
consensus CTCCAGTTACTGGACATTTTCCATAGTCAGAGATGTGACGTTCGATTAAACGCTTCTCGA
. : . : . : . : . : . :
JMFF009G17+ ACAGAAGTCCGGAATTCTTTGAGACTACCGGATCCTCCGGGACATCACCGGAAATTGAGC
JMFF042O05+ ACAGAAGTCCGGAATTCTTTGAGACTACCGGATCCTCCGGGACATCACCGGAAATTGAGC
JMSF045O21+ ACAGAAGTCCGGAATTCTTTGAGACTACCGGATCCTCCGGGACATCACCGGAAATTGAGC
JMSF006C22+ ACAGAAGTCCGGAATTCTTTGAGACTACCGGATCCTCCGGGACATCACCGGAAATTGAGC
____________________________________________________________
consensus ACAGAAGTCCGGAATTCTTTGAGACTACCGGATCCTCCGGGACATCACCGGAAATTGAGC
. : . : . : . : . : . :
JMFF009G17+ AGTTCATTGCAGGCCGAGAAACGGAAAGACAAAACACAGAAGGCTCTCTCCGGCTTCGAC
JMFF042O05+ AGTTCATTGCAGGCCGAGAAACGGAAAGACAAAACACAGAAGGCTCTCTCCGGCTTCGAC
JMSF045O21+ AGTTCATTGCAGGCCGAGAAACGGAAAGACAAAACACAGAAGGCTCTCTCCGGCTTCGAC
JMSF006C22+ AGTTCATTGCAGGCCGAGAAACGGAAAGACAAAACACAGAAGGCTCTCTCCGGCTTCGAC
____________________________________________________________
consensus AGTTCATTGCAGGCCGAGAAACGGAAAGACAAAACACAGAAGGCTCTCTCCGGCTTCGAC
. : . : . : . : . : . :
JMFF009G17+ CTGGTCGAGAGTAAGGAGCGGGAAGGAGAGGTGTAGAAAGGGAGGAAGAAGAAAAAATC
JMFF042O05+ CTGGTCGAGAGTAAGGAGCGGGAAGGAGAGGTGTAGAAAGGGAGGAAGAAG
JMSF045O21+ CTGGTCGAGAGTAAGGAGCGGGAAGGAGAGGTGTAGAAAGGGAGGAAGAAGAAAAAATC
JMSF006C22+ CTGGTCGAGAGTAAGGAGCGGGAAGGAGAGGTGTAGAAAGGGAGGAAGAAGAAAAAATCC
____________________________________________________________
consensus CTGGTCGAGAGTAAGGAGCGGGAAGGAGAGGTGTAGAAAGGGAGGAAGAAGAAAAAATCC