Contig 010556:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN019I04Sequence444010556 (4)ref|XP_010253042.1|9e-09PREDICTED: ubiquinol-cytochrome c reductase complex 6.7 kDa protein [Nelumbo nu
JMSF003F06Sequence408010556 (4)ref|XP_010253042.1|7e-09PREDICTED: ubiquinol-cytochrome c reductase complex 6.7 kDa protein [Nelumbo nu
JMSF003G06Sequence417010556 (4)ref|XP_010253042.1|8e-09PREDICTED: ubiquinol-cytochrome c reductase complex 6.7 kDa protein [Nelumbo nu419010556 (4)ref|XP_010253042.1|8e-09PREDICTED: ubiquinol-cytochrome c reductase complex 6.7 kDa protein [Nelumbo nu

Alignment

This contig is upended


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JMFN019I04+                                    AAAAAGAAGAATGAAATCCAATTATTTGAAGAATC
                      ____________________________________________________________
consensus                                      AAAAAGAAGAATGAAATCCAATTATTTGAAGAATC
 
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JMFN019I04+           AATATCCCAAAGTTAACTGAGGTATCAACAAAAACTTATCATT-GTACTAACAATAACAA
rJMSF003G06-                     GTTAACTGAGGTATCAACAAAAACTTATCATTGGTACTAACAATAACAA
rJMSF003F06-                     GTTAACTGAGGTATCAACAAAAACTTATCATT-GTACTAACAATAACAA
JMSF003G06+                      GTTAACTGAGGTATCAACAAAAACTTATCATT-GTACTAACAATAACAA
                      ____________________________________________________________
consensus             AATATCCCAAAGTTAACTGAGGTATCAACAAAAACTTATCATT-GTACTAACAATAACAA
 
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JMFN019I04+           AATGAAAATGTTCAGAGTATTATTCAACTCGCTCAGAGCTTGCCGCCGCAGCAGCAGCAA
rJMSF003G06-          AATGAAAATGTTCAGAGTATTATTCAACTCGCTCAGAGCTTGCCGCCGCAGCAGCAGCAA
rJMSF003F06-          AATGAAAATGTTCAGAGTATTATTCAACTCGCTCAGAGCTTGCCGCCGCAGCAGCAGCAA
JMSF003G06+           AATGAAAATGTTCAGAGTATTATTCAACTCGCTCAGAGCTTGCCGCCGCAGCAGCAGCAA
                      ____________________________________________________________
consensus             AATGAAAATGTTCAGAGTATTATTCAACTCGCTCAGAGCTTGCCGCCGCAGCAGCAGCAA
 
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JMFN019I04+           CACCAAATAGCTCACATAATATCGATCACTTTTCTTCTTGCTCTTTCTCAAAAAATGTCT
rJMSF003G06-          CACCAAATAGCTCACATAATATCGATCACTTTTCTTCTTGCTCTTTCTCAAAAAATGTCT
rJMSF003F06-          CACCAAATAGCTCACATAATATCGATCACTTTTCTTCTTGCTCTTTCTCAAAAAATGTCT
JMSF003G06+           CACCAAATAGCTCACATAATATCGATCACTTTTCTTCTTGCTCTTTCTCAAAAAATGTCT
                      ____________________________________________________________
consensus             CACCAAATAGCTCACATAATATCGATCACTTTTCTTCTTGCTCTTTCTCAAAAAATGTCT
 
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JMFN019I04+           TCCTGATCCAGTCAAATGGCTGGACAAGCCAGATGGCGGTGGCGCCGGCGGCGACGCCCC
rJMSF003G06-          TCCTGATCCAGTCAAATGGCTGGACAAGCCAGATGGCGGTGGCGCCGGCGGCGACGCCCC
rJMSF003F06-          TCCTGATCCAGTCAAATGGCTGGACAAGCCAGATGGCGGTGGCGCCGGCGGCGACGCCCC
JMSF003G06+           TCCTGATCCAGTCAAATGGCTGGACAAGCCAGATGGCGGTGGCGCCGGCGGCGACGCCCC
                      ____________________________________________________________
consensus             TCCTGATCCAGTCAAATGGCTGGACAAGCCAGATGGCGGTGGCGCCGGCGGCGACGCCCC
 
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JMFN019I04+           ACGTGGCGGCGGCCTGGATATCTGTGGATTGCGGACGGAGGGCAGGGCGGATGAACTTGA
rJMSF003G06-          ACGTGGCGGCGGCCTGGATATCTGTGGATTGCGGACGGAGGGCAGGGCGGATGAACTTGA
rJMSF003F06-          ACGTGGCGGCGGCCTGGATATCTGTGGATTGCGGACGGAGGGCAGGGCGGATGAACTTGA
JMSF003G06+           ACGTGGCGGCGGCCTGGATATCTGTGGATTGCGGACGGAGGGCAGGGCGGATGAACTTGA
                      ____________________________________________________________
consensus             ACGTGGCGGCGGCCTGGATATCTGTGGATTGCGGACGGAGGGCAGGGCGGATGAACTTGA
 
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JMFN019I04+           AGAGTCCGGTTGTCATCTTCTTCGTCGTCGTTCAACAAACACGGTCAACTATACAACCCT
rJMSF003G06-          AGAGTCCGGTTGTCATCTTCTTCGTCGTCGTTCAACAAACACGGTCAACTATACAACCCT
rJMSF003F06-          AGAGTCCGGTTGTCATCTTCTTCGTCGTCGTTCAACAAACACGGTCAACTATACAACCCT
JMSF003G06+           AGAGTCCGGTTGTCATCTTCTTCGTCGTCGTTCAACAAACACGGTCAACTATACAACCCT
                      ____________________________________________________________
consensus             AGAGTCCGGTTGTCATCTTCTTCGTCGTCGTTCAACAAACACGGTCAACTATACAACCCT
 
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JMFN019I04+           AGCTTTTGAATTTCTTCCTTTTCTGCGCAGCCTGAAACCAAATCACTGAA          
rJMSF003G06-          AGCTTTTGAATTTCTTCCTTTTCTGCGCAGCCTGAAACCAAATCACTGAAAATGGAGTCC
rJMSF003F06-          AGCTTTTGAATTTCTTCCTTTTCTGCGCAGCCTGAAACCAAATCACTGAAAATGGAGTCC
JMSF003G06+           AGCTTTTGAATTTCTTCCTTTTCTGCGCAGCCTGAAACCAAATCACTGAAAATGGAGTCC
                      ____________________________________________________________
consensus             AGCTTTTGAATTTCTTCCTTTTCTGCGCAGCCTGAAACCAAATCACTGAAAATGGAGTCC